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Sequences
The following sequences are available for this feature:
mRNA from alignment at ch4:4409161..4410775+ Legend: five_prime_UTRexonpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >KJC3_006017-T1 ID=KJC3_006017-T1|Name=KJC3_006017-T1|organism=Aspergillus niger KJC3|type=mRNA|length=1615bp|location=Sequence derived from alignment at ch4:4409161..4410775+ (Aspergillus niger KJC3)
CTTCTATCAAGCAGCTATCAACTCCCGCCGAGTCGGGGATTCGAGCAATC
GGCGATGGACGGGCGTATCAACCAATCGCGGATCACGATACGCTGCATGC
ACTACATGCAGTACTAGTATACTGATAACTGAGATGTACAAGAGCTAAAG
ACCCCCCTCATTCGCTTGTCTTTGACAGTTCACACCGACCTCAACCACCA
TCAACATGGACATGAACATAGAAGATTGGATTTTCTATATCCAAAACAAC
CCCATTGTCGTAGTTTTCCTTGTCCTTGCACTGTGGTTATTCGGATTGTG
GAATCGAGTAAGTCTACTTCTGTCTACCAGTGCACGCAATCGACTAACAA
TATGCGCAGCAATCATCTCCAGTCATTCCTAAAGATGAAGAAGATACCTA
CCCCCCAGTCATTCCCCTCCCATCCTTCAACTGGGAGACCACGGAACCTA
TCAAATACCGTCCCTTTAAGCCAAAATACCACCTCAGCATGGGTAGGCAT
CCTATACCCCTTCCTATCGAAGCCACCCAGACAGACAACATCAACTAACA
AAAGCAAAATCCAGCCCTAACAACAACCGACATATCCCATCTCATCCCCA
TGGACAAAACCTACAAAGACCGTCTCTCCCTCCGCCAGTCCCTCCTCGCC
CAATACCCCACCATCGTGGTAGGCGTCACTCCAGCAGGCCAGAAACCAGA
TAGTCCCGTCTATGCCGCCGTCACCGAACTCTACGACTTCATTGTAGGCG
TATACCTTCCCACCCGCTACCCAAGCATGTTTACACTTGAGACGATCCAT
TCCCAAGATCACAACACCACCAACAACGAGGAGAAAAATACCAAAACCCT
ATTGAACAAAGTAACCAACACCCGCATCCCCCTCCCCCACACTGGCTCCG
GACGAGATATCCTCTCTACCCTGGGGACATTCGTCGACGAGGACTTTCTC
ATTTTACTTCCTGATTCATCCCCTCAACCCAAGGAAAACCAAGAAGAAGA
GAAGAAATATACACTAGAAGCATACACAACCTTCTACCCCGCCGGCTTCG
ACACGCGCGAAAAGCTCGGCAAGCGGCTGTCGACGATCCACGACCCCGTG
CCGCGGTACAAAGAGCGGCTGGAGAAAAGCATGGATCGGTTCTTTGCGAG
ACTTGAGGTCGGGAAGGTCGTGCAGCGCGTGAACTGGAGTATTAATACCC
AGGGAACGGGGCTGTTTGCTGCGTTTGGGGGATTGCATGGGCATGAGGGG
GAGAGGGAGAAAGTTTTGGGGGTGAAGGAAGTGGATGGGGATGTGGTATG
TCATACTTGTATTCCCCTTTTTTTTTTGTCTCTCCTTTTTCTGTCTTCTT
TTCGGGGTCTGGAACGTATACTGACTATGTGTAGACACTCCTTCGGTGTG
AGCGTCAGACCTTGCATCGGTTACCGAAGACCAAGGCGCTGGTGTTCACT
TTTCACACGTATACGTACCCGATTCGGGAGATCAAGGAGGAAGGGCTGGG
CGAGGAATTGGCGTTAGCGATTGATGGGTTGAAGGAGGGGAATGTGCCTG
AGATTCATCGCTATAAGAGGGGTCCTGTGTGGGGGGAGGCGGTTAAGGCG
TATTTGAGAGCGTAG back to topCoding sequence (CDS) from alignment at ch4:4409161..4410775+ >KJC3_006017-T1 ID=KJC3_006017-T1|Name=KJC3_006017-T1|organism=Aspergillus niger KJC3|type=CDS|length=4788bp|location=Sequence derived from alignment at ch4:4409161..4410775+ (Aspergillus niger KJC3)
ATGGACATGAACATAGAAGATTGGATTTTCTATATCCAAAACAACCCCAT
TGTCGTAGTTTTCCTTGTCCTTGCACTGTGGTTATTCGGATTGTGGAATC
GACAATCATCTCCAGTCATTCCTAAAGATGAAGAAGATACCTACCCCCCA
GTCATTCCCCTCCCATCCTTCAACTGGGAGACCACGGAACCTATCAAATA
CCGTCCCTTTAAGCCAAAATACCACCTCAGCATGGCCCTAACAACAACCG
ACATATCCCATCTCATCCCCATGGACAAAACCTACAAAGACCGTCTCTCC
CTCCGCCAGTCCCTCCTCGCCCAATACCCCACCATCGTGGTAGGCGTCAC
TCCAGCAGGCCAGAAACCAGATAGTCCCGTCTATGCCGCCGTCACCGAAC
TCTACGACTTCATTGTAGGCGTATACCTTCCCACCCGCTACCCAAGCATG
TTTACACTTGAGACGATCCATTCCCAAGATCACAACACCACCAACAACGA
GGAGAAAAATACCAAAACCCTATTGAACAAAGTAACCAACACCCGCATCC
CCCTCCCCCACACTGGCTCCGGACGAGATATCCTCTCTACCCTGGGGACA
TTCGTCGACGAGGACTTTCTCATTTTACTTCCTGATTCATCCCCTCAACC
CAAGGAAAACCAAGAAGAAGAGAAGAAATATACACTAGAAGCATACACAA
CCTTCTACCCCGCCGGCTTCGACACGCGCGAAAAGCTCGGCAAGCGGCTG
TCGACGATCCACGACCCCGTGCCGCGGTACAAAGAGCGGCTGGAGAAAAG
CATGGATCGGTTCTTTGCGAGACTTGAGGTCGGGAAGGTCGTGCAGCGCG
TGAACTGGAGTATTAATACCCAGGGAACGGGGCTGTTTGCTGCGTTTGGG
GGATTGCATGGGCATGAGGGGGAGAGGGAGAAAGTTTTGGGGGTGAAGGA
AGTGGATGGGGATGTGACACTCCTTCGGTGTGAGCGTCAGACCTTGCATC
GGTTACCGAAGACCAAGGCGCTGGTGTTCACTTTTCACACGTATACGTAC
CCGATTCGGGAGATCAAGGAGGAAGGGCTGGGCGAGGAATTGGCGTTAGC
GATTGATGGGTTGAAGGAGGGGAATGTGCCTGAGATTCATCGCTATAAGA
GGGGTCCTGTGTGGGGGGAGGCGGTTAAGGCGTATTTGAGAGCGTAGATG
GACATGAACATAGAAGATTGGATTTTCTATATCCAAAACAACCCCATTGT
CGTAGTTTTCCTTGTCCTTGCACTGTGGTTATTCGGATTGTGGAATCGAC
AATCATCTCCAGTCATTCCTAAAGATGAAGAAGATACCTACCCCCCAGTC
ATTCCCCTCCCATCCTTCAACTGGGAGACCACGGAACCTATCAAATACCG
TCCCTTTAAGCCAAAATACCACCTCAGCATGGCCCTAACAACAACCGACA
TATCCCATCTCATCCCCATGGACAAAACCTACAAAGACCGTCTCTCCCTC
CGCCAGTCCCTCCTCGCCCAATACCCCACCATCGTGGTAGGCGTCACTCC
AGCAGGCCAGAAACCAGATAGTCCCGTCTATGCCGCCGTCACCGAACTCT
ACGACTTCATTGTAGGCGTATACCTTCCCACCCGCTACCCAAGCATGTTT
ACACTTGAGACGATCCATTCCCAAGATCACAACACCACCAACAACGAGGA
GAAAAATACCAAAACCCTATTGAACAAAGTAACCAACACCCGCATCCCCC
TCCCCCACACTGGCTCCGGACGAGATATCCTCTCTACCCTGGGGACATTC
GTCGACGAGGACTTTCTCATTTTACTTCCTGATTCATCCCCTCAACCCAA
GGAAAACCAAGAAGAAGAGAAGAAATATACACTAGAAGCATACACAACCT
TCTACCCCGCCGGCTTCGACACGCGCGAAAAGCTCGGCAAGCGGCTGTCG
ACGATCCACGACCCCGTGCCGCGGTACAAAGAGCGGCTGGAGAAAAGCAT
GGATCGGTTCTTTGCGAGACTTGAGGTCGGGAAGGTCGTGCAGCGCGTGA
ACTGGAGTATTAATACCCAGGGAACGGGGCTGTTTGCTGCGTTTGGGGGA
TTGCATGGGCATGAGGGGGAGAGGGAGAAAGTTTTGGGGGTGAAGGAAGT
GGATGGGGATGTGACACTCCTTCGGTGTGAGCGTCAGACCTTGCATCGGT
TACCGAAGACCAAGGCGCTGGTGTTCACTTTTCACACGTATACGTACCCG
ATTCGGGAGATCAAGGAGGAAGGGCTGGGCGAGGAATTGGCGTTAGCGAT
TGATGGGTTGAAGGAGGGGAATGTGCCTGAGATTCATCGCTATAAGAGGG
GTCCTGTGTGGGGGGAGGCGGTTAAGGCGTATTTGAGAGCGTAGATGGAC
ATGAACATAGAAGATTGGATTTTCTATATCCAAAACAACCCCATTGTCGT
AGTTTTCCTTGTCCTTGCACTGTGGTTATTCGGATTGTGGAATCGACAAT
CATCTCCAGTCATTCCTAAAGATGAAGAAGATACCTACCCCCCAGTCATT
CCCCTCCCATCCTTCAACTGGGAGACCACGGAACCTATCAAATACCGTCC
CTTTAAGCCAAAATACCACCTCAGCATGGCCCTAACAACAACCGACATAT
CCCATCTCATCCCCATGGACAAAACCTACAAAGACCGTCTCTCCCTCCGC
CAGTCCCTCCTCGCCCAATACCCCACCATCGTGGTAGGCGTCACTCCAGC
AGGCCAGAAACCAGATAGTCCCGTCTATGCCGCCGTCACCGAACTCTACG
ACTTCATTGTAGGCGTATACCTTCCCACCCGCTACCCAAGCATGTTTACA
CTTGAGACGATCCATTCCCAAGATCACAACACCACCAACAACGAGGAGAA
AAATACCAAAACCCTATTGAACAAAGTAACCAACACCCGCATCCCCCTCC
CCCACACTGGCTCCGGACGAGATATCCTCTCTACCCTGGGGACATTCGTC
GACGAGGACTTTCTCATTTTACTTCCTGATTCATCCCCTCAACCCAAGGA
AAACCAAGAAGAAGAGAAGAAATATACACTAGAAGCATACACAACCTTCT
ACCCCGCCGGCTTCGACACGCGCGAAAAGCTCGGCAAGCGGCTGTCGACG
ATCCACGACCCCGTGCCGCGGTACAAAGAGCGGCTGGAGAAAAGCATGGA
TCGGTTCTTTGCGAGACTTGAGGTCGGGAAGGTCGTGCAGCGCGTGAACT
GGAGTATTAATACCCAGGGAACGGGGCTGTTTGCTGCGTTTGGGGGATTG
CATGGGCATGAGGGGGAGAGGGAGAAAGTTTTGGGGGTGAAGGAAGTGGA
TGGGGATGTGACACTCCTTCGGTGTGAGCGTCAGACCTTGCATCGGTTAC
CGAAGACCAAGGCGCTGGTGTTCACTTTTCACACGTATACGTACCCGATT
CGGGAGATCAAGGAGGAAGGGCTGGGCGAGGAATTGGCGTTAGCGATTGA
TGGGTTGAAGGAGGGGAATGTGCCTGAGATTCATCGCTATAAGAGGGGTC
CTGTGTGGGGGGAGGCGGTTAAGGCGTATTTGAGAGCGTAGATGGACATG
AACATAGAAGATTGGATTTTCTATATCCAAAACAACCCCATTGTCGTAGT
TTTCCTTGTCCTTGCACTGTGGTTATTCGGATTGTGGAATCGACAATCAT
CTCCAGTCATTCCTAAAGATGAAGAAGATACCTACCCCCCAGTCATTCCC
CTCCCATCCTTCAACTGGGAGACCACGGAACCTATCAAATACCGTCCCTT
TAAGCCAAAATACCACCTCAGCATGGCCCTAACAACAACCGACATATCCC
ATCTCATCCCCATGGACAAAACCTACAAAGACCGTCTCTCCCTCCGCCAG
TCCCTCCTCGCCCAATACCCCACCATCGTGGTAGGCGTCACTCCAGCAGG
CCAGAAACCAGATAGTCCCGTCTATGCCGCCGTCACCGAACTCTACGACT
TCATTGTAGGCGTATACCTTCCCACCCGCTACCCAAGCATGTTTACACTT
GAGACGATCCATTCCCAAGATCACAACACCACCAACAACGAGGAGAAAAA
TACCAAAACCCTATTGAACAAAGTAACCAACACCCGCATCCCCCTCCCCC
ACACTGGCTCCGGACGAGATATCCTCTCTACCCTGGGGACATTCGTCGAC
GAGGACTTTCTCATTTTACTTCCTGATTCATCCCCTCAACCCAAGGAAAA
CCAAGAAGAAGAGAAGAAATATACACTAGAAGCATACACAACCTTCTACC
CCGCCGGCTTCGACACGCGCGAAAAGCTCGGCAAGCGGCTGTCGACGATC
CACGACCCCGTGCCGCGGTACAAAGAGCGGCTGGAGAAAAGCATGGATCG
GTTCTTTGCGAGACTTGAGGTCGGGAAGGTCGTGCAGCGCGTGAACTGGA
GTATTAATACCCAGGGAACGGGGCTGTTTGCTGCGTTTGGGGGATTGCAT
GGGCATGAGGGGGAGAGGGAGAAAGTTTTGGGGGTGAAGGAAGTGGATGG
GGATGTGACACTCCTTCGGTGTGAGCGTCAGACCTTGCATCGGTTACCGA
AGACCAAGGCGCTGGTGTTCACTTTTCACACGTATACGTACCCGATTCGG
GAGATCAAGGAGGAAGGGCTGGGCGAGGAATTGGCGTTAGCGATTGATGG
GTTGAAGGAGGGGAATGTGCCTGAGATTCATCGCTATAAGAGGGGTCCTG
TGTGGGGGGAGGCGGTTAAGGCGTATTTGAGAGCGTAG back to top
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following five_prime_UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type |
|---|
| KJC3_006017-T1.utr5p1 | KJC3_006017-T1.utr5p1 | Aspergillus niger KJC3 | five_prime_UTR |
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Properties
| Property Name | Value |
|---|
| DBxref | InterPro:IPR021848 |
| DBxref | PFAM:PF11927 |
| Product | hypothetical protein |
Analyses
This mRNA is derived from or has results from the following analyses
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| ch4 | supercontig | ch4:4409161..4410775 + |
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