You are here

Home

KJC3_006175-T1, KJC3_006175-T1 (mRNA) Aspergillus niger KJC3

Overview
NameKJC3_006175-T1
Unique NameKJC3_006175-T1
TypemRNA
OrganismAspergillus niger KJC3
Sequences
The following sequences are available for this feature:

mRNA from alignment at ch4:4928951..4932198-

Legend: polypeptideCDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
>KJC3_006175-T1 ID=KJC3_006175-T1|Name=KJC3_006175-T1|organism=Aspergillus niger KJC3|type=mRNA|length=3248bp|location=Sequence derived from alignment at ch4:4928951..4932198- (Aspergillus niger KJC3)
ATGCAAACGTGGAAGGAGAGGGCCAGACCTACCGTGAGGTTATGGCTCTA
CGTGAGCTTGAGAAAGAAGAAGAGCGTGTTCAGAAGCTGATCGCAGAGAA
GCAGGCTCGTGGAGAGGACGATGTTCAGGAGCATGAGGCCACCTTGAAGT
CGGAGGACAAAGAAAACGCCGAAGCTGGCTCGACCGTTTCGGTCGCCACC
GGTCGCAAGCGTAAACAACGGTGGGATGTGTCATCTGAGCCTACTGAGTC
GGCTGAAGCTGAGGCCCCGCAGCCCGCAGACACCAAGGCCAAGAGATCCC
GCTGGGATCAAACGCCTGCACCTGCCGTCCCTGGCGCCGCCGCCGAGGAA
GCCCCTAAGCGTCGTTCTCGATGGGATCAAGCGCCGGCCATTGCGGCATC
CACCCCCGTGGGTAACCAAGGGCTTGCTACCCCGATGCATCCTTCTCAAG
TAGGTGTGCCTATGATGCCCACCAGCTTTGGAACTGATATCTCTGCACGC
AATGCTCCTCTGTCGGATGAAGAACTTGATATGATGCTGCCCTCGGAGGG
CTACAAGATCCTCGAGCCTCCTCCGGGCTACGCCCCAATCCGGAACCCCG
CGAGAAAGCTTATGGCGACACCGGCACCAATGGCCAGTGCGACAGGAGTT
GGAGGTTTTATGATGCAGGAGCCAGAGAGCGCCCGTGCGATGGGCAAGCA
GCTACCGACCGAAATTCCCGGTGTTGGTGACTTGCAGTTCTTCAAGCCGG
AAGATATGGCCTACTTTGGAAAACTTATGGAAGGTGGGGATGAGAGTGCG
ATGTCCGTGGAGGAGCTGAAGGAAAGGAAGATTATGAGACTGTTGCTGAA
AGTGAAGAACGGCACTCCGCCTATGAGAAAGACTGCACTGCGTCAGCTTA
CAGACAACGCGCGGCAGTTCGGTGCCGGCCCTCTCTTCAATCAGATTCTC
CCACTTCTTATGGAAAAGTCCCTTGAAGACCAAGAGCGCCACTTGTTGGT
CAAGGTTATTGACCGTGTCCTGTACAAGCTGGATGATCTCGTTCGTCCCT
ATGTTCACAAGATCCTGGTCGTCATCGAGCCCTTGCTCATTGACCAAGAC
TACTATGCTCGTGTCGAGGGTCGTGAAATTATCTCCAACTTGGCCAAGGC
GGCCGGTCTTGCCACGATGATTAGTACGATGCGTCCCGATATTGACCATG
TCGATGAGTACGTCCGTAACACGACTGCTCGAGCATTTGCTGTCGTTGCT
TCTGCGCTTGGTATCCCTGCACTTCTACCCTTCCTTCGTGCTGTGTGTCG
GAGTAAGAAGTCGTGGCAGGCCAGGCACACTGGTGTCAAGATTGTTCAGC
AAATTCCTATCCTTATGGGCTGTGCCATTCTTCCCCATCTGAAGGGGCTG
GTCGACTGTATCGCCGACAACCTGAGCGACGAGCAAGCTAAAGTCAGAAC
CGTCACTGCTTTGGCCGTGGCTGCTTTGGCCGAAGCTGCCAACCCGTACG
GTATCGAGAGTTTCGATGAGATCCTCAACCCCTTGTGGACTGGAGCTCGG
AAGCAGCGTGGTAAGGGTCTGGCAGCGTTCTTGAAGGCAGTCGGTTACAT
CATCCCTCTCATGGACGAGGAATACGCGAACTACTACACTAGTCAGATCA
TGGAGATCCTTCTTCGTGAATTCTCCTCTCCCGACGAGGAGATGAAGAAG
GTCGTCTTGAAGGTAGTGTCGCAGTGTGCTAGCACTGATGGTGTGACAGC
CAGCTATCTGAAGGAGCACGTGTTGACCGACTTCTTTAAGAGCTTCTGGG
TGCGACGTATGGCGCTGGACCGGAGGAACTATCGCCAGGTTGTTGATACG
ACCGTGGATCTTGGCCAGAAGGTCGGTGTGGGTGAGATCTTGGAGCGCGT
CGTGAACAACCTCAAGGATGAAAGCGAGCCCTACCGGAAGATGACTGTGG
AGACCGTGGAGAAGCTTATTGCAGCCCTTGGAGCTGCCGATATCTCCGAG
AGGCTGGAGGAACGACTCATTGATGGTGTTCTCTATGCCTTCCAGGAACA
GAGCATCGAGGATATTGTGATTCTGAACGGTTTCGGAACGGTGGTCAACG
CCCTGGGCACTCGCTGCAAGCCTTACCTCCCTCAGATTGTCAGTACCATC
CTCTGGCGGTTGAACAACAAATCCGCCACGGTCCGTCAGCAGGCTGCGGA
TCTGATCTCGCGCATTGCAATGGTCATGAAGCAGTGTGGAGAAGACGCTC
TGATGGGCAAGCTTGGTATTGTGCTCTACGAATACTTGGGTGAAGAATAC
CCCGAGGTGCTTGGTTCCATCCTTGGTGCTCTTCGTTCGATCGTCACTGT
CGTTGGTATCAACCAGATGCAGCCTCCTATCAGAGATCTGCTGCCTCGAC
TCACTCCTATCCTGCGTAACCGTCACGAGAAGGTGCAAGAGAACACGATC
GACCTGGTCGGTCGTATTGCCGACCGTGGCCCCGAATCGGTCAACGCCCG
CGAGTGGATGCGTATCTGCTTCGAGCTGCTGGACATGCTGAAGGCTCACA
AGAAGGGTATCCGTCGTGCTGCCAACAACACATTCGGTTTCATCGCCAAG
GCCATCGGTCCCCAGGATGTGTTGGCGACGCTGTTGAACAACCTCCGTGT
CCAAGAACGTCAATCCCGTGTCTGTACCGCCGTCGCCATCGGTATTGTGG
CTGAGACTTGTGCACCTTTCACCGTCCTGCCGGCCCTGATGAACGAATAC
CGTGTGCCCGAACTGAACGTCCAGAACGGTGTGCTCAAGGCCATGTCCTT
CTTGTTCGAGTACATTGGCGAGATGGCCAAGGATTACGTCTACGCAGTCA
CGCCTCTTCTGGAGGATGCTCTCATCGATCGCGACCAGGTGCACCGGCAG
ACCGCAGCCAGCGTTGTCAAGCACATCGCGCTGGGCGTGGTTGGTCTGGG
ATGTGAAGACGCAATGGTGCATCTGCTTAACCTGGTGTTCCCCAACATCT
TCGAGACCAGCCCCCACGTCATCGACCGTGTCATTGAAGCCATTGATGCG
ATCCGGATGGCAGTCGGCACCGGTGTGGTCATGAACTACGTGTGGGCAGG
CTTGTTCCACCCGGCGCGCAAGGTGCGCACGCCGTATTGGCGACTGTACA
ACGATGCGTACGTGCAGAGTGCGGACGCGATGATTCCCTACTACCCCGGC
CTGGAAGACGATGGTCTGGACCGGACTGAGTTGTCTATCATAGTTTGA
back to top

Coding sequence (CDS) from alignment at ch4:4928951..4932198-

>KJC3_006175-T1 ID=KJC3_006175-T1|Name=KJC3_006175-T1|organism=Aspergillus niger KJC3|type=CDS|length=6396bp|location=Sequence derived from alignment at ch4:4928951..4932198- (Aspergillus niger KJC3)
CAGGCTCGTGGAGAGGACGATGTTCAGGAGCATGAGGCCACCTTGAAGTC
GGAGGACAAAGAAAACGCCGAAGCTGGCTCGACCGTTTCGGTCGCCACCG
GTCGCAAGCGTAAACAACGGTGGGATGTGTCATCTGAGCCTACTGAGTCG
GCTGAAGCTGAGGCCCCGCAGCCCGCAGACACCAAGGCCAAGAGATCCCG
CTGGGATCAAACGCCTGCACCTGCCGTCCCTGGCGCCGCCGCCGAGGAAG
CCCCTAAGCGTCGTTCTCGATGGGATCAAGCGCCGGCCATTGCGGCATCC
ACCCCCGTGGGTAACCAAGGGCTTGCTACCCCGATGCATCCTTCTCAAGT
AGGTGTGCCTATGATGCCCACCAGCTTTGGAACTGATATCTCTGCACGCA
ATGCTCCTCTGTCGGATGAAGAACTTGATATGATGCTGCCCTCGGAGGGC
TACAAGATCCTCGAGCCTCCTCCGGGCTACGCCCCAATCCGGAACCCCGC
GAGAAAGCTTATGGCGACACCGGCACCAATGGCCAGTGCGACAGGAGTTG
GAGGTTTTATGATGCAGGAGCCAGAGAGCGCCCGTGCGATGGGCAAGCAG
CTACCGACCGAAATTCCCGGTGTTGGTGACTTGCAGTTCTTCAAGCCGGA
AGATATGGCCTACTTTGGAAAACTTATGGAAGGTGGGGATGAGAGTGCGA
TGTCCGTGGAGGAGCTGAAGGAAAGGAAGATTATGAGACTGTTGCTGAAA
GTGAAGAACGGCACTCCGCCTATGAGAAAGACTGCACTGCGTCAGCTTAC
AGACAACGCGCGGCAGTTCGGTGCCGGCCCTCTCTTCAATCAGATTCTCC
CACTTCTTATGGAAAAGTCCCTTGAAGACCAAGAGCGCCACTTGTTGGTC
AAGGTTATTGACCGTGTCCTGTACAAGCTGGATGATCTCGTTCGTCCCTA
TGTTCACAAGATCCTGGTCGTCATCGAGCCCTTGCTCATTGACCAAGACT
ACTATGCTCGTGTCGAGGGTCGTGAAATTATCTCCAACTTGGCCAAGGCG
GCCGGTCTTGCCACGATGATTAGTACGATGCGTCCCGATATTGACCATGT
CGATGAGTACGTCCGTAACACGACTGCTCGAGCATTTGCTGTCGTTGCTT
CTGCGCTTGGTATCCCTGCACTTCTACCCTTCCTTCGTGCTGTGTGTCGG
AGTAAGAAGTCGTGGCAGGCCAGGCACACTGGTGTCAAGATTGTTCAGCA
AATTCCTATCCTTATGGGCTGTGCCATTCTTCCCCATCTGAAGGGGCTGG
TCGACTGTATCGCCGACAACCTGAGCGACGAGCAAGCTAAAGTCAGAACC
GTCACTGCTTTGGCCGTGGCTGCTTTGGCCGAAGCTGCCAACCCGTACGG
TATCGAGAGTTTCGATGAGATCCTCAACCCCTTGTGGACTGGAGCTCGGA
AGCAGCGTGGTAAGGGTCTGGCAGCGTTCTTGAAGGCAGTCGGTTACATC
ATCCCTCTCATGGACGAGGAATACGCGAACTACTACACTAGTCAGATCAT
GGAGATCCTTCTTCGTGAATTCTCCTCTCCCGACGAGGAGATGAAGAAGG
TCGTCTTGAAGGTAGTGTCGCAGTGTGCTAGCACTGATGGTGTGACAGCC
AGCTATCTGAAGGAGCACGTGTTGACCGACTTCTTTAAGAGCTTCTGGGT
GCGACGTATGGCGCTGGACCGGAGGAACTATCGCCAGGTTGTTGATACGA
CCGTGGATCTTGGCCAGAAGGTCGGTGTGGGTGAGATCTTGGAGCGCGTC
GTGAACAACCTCAAGGATGAAAGCGAGCCCTACCGGAAGATGACTGTGGA
GACCGTGGAGAAGCTTATTGCAGCCCTTGGAGCTGCCGATATCTCCGAGA
GGCTGGAGGAACGACTCATTGATGGTGTTCTCTATGCCTTCCAGGAACAG
AGCATCGAGGATATTGTGATTCTGAACGGTTTCGGAACGGTGGTCAACGC
CCTGGGCACTCGCTGCAAGCCTTACCTCCCTCAGATTGTCAGTACCATCC
TCTGGCGGTTGAACAACAAATCCGCCACGGTCCGTCAGCAGGCTGCGGAT
CTGATCTCGCGCATTGCAATGGTCATGAAGCAGTGTGGAGAAGACGCTCT
GATGGGCAAGCTTGGTATTGTGCTCTACGAATACTTGGGTGAAGAATACC
CCGAGGTGCTTGGTTCCATCCTTGGTGCTCTTCGTTCGATCGTCACTGTC
GTTGGTATCAACCAGATGCAGCCTCCTATCAGAGATCTGCTGCCTCGACT
CACTCCTATCCTGCGTAACCGTCACGAGAAGGTGCAAGAGAACACGATCG
ACCTGGTCGGTCGTATTGCCGACCGTGGCCCCGAATCGGTCAACGCCCGC
GAGTGGATGCGTATCTGCTTCGAGCTGCTGGACATGCTGAAGGCTCACAA
GAAGGGTATCCGTCGTGCTGCCAACAACACATTCGGTTTCATCGCCAAGG
CCATCGGTCCCCAGGATGTGTTGGCGACGCTGTTGAACAACCTCCGTGTC
CAAGAACGTCAATCCCGTGTCTGTACCGCCGTCGCCATCGGTATTGTGGC
TGAGACTTGTGCACCTTTCACCGTCCTGCCGGCCCTGATGAACGAATACC
GTGTGCCCGAACTGAACGTCCAGAACGGTGTGCTCAAGGCCATGTCCTTC
TTGTTCGAGTACATTGGCGAGATGGCCAAGGATTACGTCTACGCAGTCAC
GCCTCTTCTGGAGGATGCTCTCATCGATCGCGACCAGGTGCACCGGCAGA
CCGCAGCCAGCGTTGTCAAGCACATCGCGCTGGGCGTGGTTGGTCTGGGA
TGTGAAGACGCAATGGTGCATCTGCTTAACCTGGTGTTCCCCAACATCTT
CGAGACCAGCCCCCACGTCATCGACCGTGTCATTGAAGCCATTGATGCGA
TCCGGATGGCAGTCGGCACCGGTGTGGTCATGAACTACGTGTGGGCAGGC
TTGTTCCACCCGGCGCGCAAGGTGCGCACGCCGTATTGGCGACTGTACAA
CGATGCGTACGTGCAGAGTGCGGACGCGATGATTCCCTACTACCCCGGCC
TGGAAGACGATGGTCTGGACCGGACTGAGTTGTCTATCATAGTTTGAATG
CAAACGTGGAAGGAGAGGGCCAGACCTACCGTGAGGTTATGGCTCTACCA
GGCTCGTGGAGAGGACGATGTTCAGGAGCATGAGGCCACCTTGAAGTCGG
AGGACAAAGAAAACGCCGAAGCTGGCTCGACCGTTTCGGTCGCCACCGGT
CGCAAGCGTAAACAACGGTGGGATGTGTCATCTGAGCCTACTGAGTCGGC
TGAAGCTGAGGCCCCGCAGCCCGCAGACACCAAGGCCAAGAGATCCCGCT
GGGATCAAACGCCTGCACCTGCCGTCCCTGGCGCCGCCGCCGAGGAAGCC
CCTAAGCGTCGTTCTCGATGGGATCAAGCGCCGGCCATTGCGGCATCCAC
CCCCGTGGGTAACCAAGGGCTTGCTACCCCGATGCATCCTTCTCAAGTAG
GTGTGCCTATGATGCCCACCAGCTTTGGAACTGATATCTCTGCACGCAAT
GCTCCTCTGTCGGATGAAGAACTTGATATGATGCTGCCCTCGGAGGGCTA
CAAGATCCTCGAGCCTCCTCCGGGCTACGCCCCAATCCGGAACCCCGCGA
GAAAGCTTATGGCGACACCGGCACCAATGGCCAGTGCGACAGGAGTTGGA
GGTTTTATGATGCAGGAGCCAGAGAGCGCCCGTGCGATGGGCAAGCAGCT
ACCGACCGAAATTCCCGGTGTTGGTGACTTGCAGTTCTTCAAGCCGGAAG
ATATGGCCTACTTTGGAAAACTTATGGAAGGTGGGGATGAGAGTGCGATG
TCCGTGGAGGAGCTGAAGGAAAGGAAGATTATGAGACTGTTGCTGAAAGT
GAAGAACGGCACTCCGCCTATGAGAAAGACTGCACTGCGTCAGCTTACAG
ACAACGCGCGGCAGTTCGGTGCCGGCCCTCTCTTCAATCAGATTCTCCCA
CTTCTTATGGAAAAGTCCCTTGAAGACCAAGAGCGCCACTTGTTGGTCAA
GGTTATTGACCGTGTCCTGTACAAGCTGGATGATCTCGTTCGTCCCTATG
TTCACAAGATCCTGGTCGTCATCGAGCCCTTGCTCATTGACCAAGACTAC
TATGCTCGTGTCGAGGGTCGTGAAATTATCTCCAACTTGGCCAAGGCGGC
CGGTCTTGCCACGATGATTAGTACGATGCGTCCCGATATTGACCATGTCG
ATGAGTACGTCCGTAACACGACTGCTCGAGCATTTGCTGTCGTTGCTTCT
GCGCTTGGTATCCCTGCACTTCTACCCTTCCTTCGTGCTGTGTGTCGGAG
TAAGAAGTCGTGGCAGGCCAGGCACACTGGTGTCAAGATTGTTCAGCAAA
TTCCTATCCTTATGGGCTGTGCCATTCTTCCCCATCTGAAGGGGCTGGTC
GACTGTATCGCCGACAACCTGAGCGACGAGCAAGCTAAAGTCAGAACCGT
CACTGCTTTGGCCGTGGCTGCTTTGGCCGAAGCTGCCAACCCGTACGGTA
TCGAGAGTTTCGATGAGATCCTCAACCCCTTGTGGACTGGAGCTCGGAAG
CAGCGTGGTAAGGGTCTGGCAGCGTTCTTGAAGGCAGTCGGTTACATCAT
CCCTCTCATGGACGAGGAATACGCGAACTACTACACTAGTCAGATCATGG
AGATCCTTCTTCGTGAATTCTCCTCTCCCGACGAGGAGATGAAGAAGGTC
GTCTTGAAGGTAGTGTCGCAGTGTGCTAGCACTGATGGTGTGACAGCCAG
CTATCTGAAGGAGCACGTGTTGACCGACTTCTTTAAGAGCTTCTGGGTGC
GACGTATGGCGCTGGACCGGAGGAACTATCGCCAGGTTGTTGATACGACC
GTGGATCTTGGCCAGAAGGTCGGTGTGGGTGAGATCTTGGAGCGCGTCGT
GAACAACCTCAAGGATGAAAGCGAGCCCTACCGGAAGATGACTGTGGAGA
CCGTGGAGAAGCTTATTGCAGCCCTTGGAGCTGCCGATATCTCCGAGAGG
CTGGAGGAACGACTCATTGATGGTGTTCTCTATGCCTTCCAGGAACAGAG
CATCGAGGATATTGTGATTCTGAACGGTTTCGGAACGGTGGTCAACGCCC
TGGGCACTCGCTGCAAGCCTTACCTCCCTCAGATTGTCAGTACCATCCTC
TGGCGGTTGAACAACAAATCCGCCACGGTCCGTCAGCAGGCTGCGGATCT
GATCTCGCGCATTGCAATGGTCATGAAGCAGTGTGGAGAAGACGCTCTGA
TGGGCAAGCTTGGTATTGTGCTCTACGAATACTTGGGTGAAGAATACCCC
GAGGTGCTTGGTTCCATCCTTGGTGCTCTTCGTTCGATCGTCACTGTCGT
TGGTATCAACCAGATGCAGCCTCCTATCAGAGATCTGCTGCCTCGACTCA
CTCCTATCCTGCGTAACCGTCACGAGAAGGTGCAAGAGAACACGATCGAC
CTGGTCGGTCGTATTGCCGACCGTGGCCCCGAATCGGTCAACGCCCGCGA
GTGGATGCGTATCTGCTTCGAGCTGCTGGACATGCTGAAGGCTCACAAGA
AGGGTATCCGTCGTGCTGCCAACAACACATTCGGTTTCATCGCCAAGGCC
ATCGGTCCCCAGGATGTGTTGGCGACGCTGTTGAACAACCTCCGTGTCCA
AGAACGTCAATCCCGTGTCTGTACCGCCGTCGCCATCGGTATTGTGGCTG
AGACTTGTGCACCTTTCACCGTCCTGCCGGCCCTGATGAACGAATACCGT
GTGCCCGAACTGAACGTCCAGAACGGTGTGCTCAAGGCCATGTCCTTCTT
GTTCGAGTACATTGGCGAGATGGCCAAGGATTACGTCTACGCAGTCACGC
CTCTTCTGGAGGATGCTCTCATCGATCGCGACCAGGTGCACCGGCAGACC
GCAGCCAGCGTTGTCAAGCACATCGCGCTGGGCGTGGTTGGTCTGGGATG
TGAAGACGCAATGGTGCATCTGCTTAACCTGGTGTTCCCCAACATCTTCG
AGACCAGCCCCCACGTCATCGACCGTGTCATTGAAGCCATTGATGCGATC
CGGATGGCAGTCGGCACCGGTGTGGTCATGAACTACGTGTGGGCAGGCTT
GTTCCACCCGGCGCGCAAGGTGCGCACGCCGTATTGGCGACTGTACAACG
ATGCGTACGTGCAGAGTGCGGACGCGATGATTCCCTACTACCCCGGCCTG
GAAGACGATGGTCTGGACCGGACTGAGTTGTCTATCATAGTTTGAATGCA
AACGTGGAAGGAGAGGGCCAGACCTACCGTGAGGTTATGGCTCTAC
back to top
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
SF3B1KJC3_006175Aspergillus niger KJC3gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
KJC3_006175-T1KJC3_006175-T1-proteinAspergillus niger KJC3polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
KJC3_006175-T1.cdsKJC3_006175-T1.cdsAspergillus niger KJC3CDS


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
KJC3_006175-T1.exon2KJC3_006175-T1.exon2Aspergillus niger KJC3exon
KJC3_006175-T1.exon1KJC3_006175-T1.exon1Aspergillus niger KJC3exon


Properties
Property NameValue
NoteBUSCO:EOG092608T8
DBxrefInterPro:IPR016024
DBxrefInterPro:IPR021133
DBxrefInterPro:IPR015016
DBxrefInterPro:IPR011989
DBxrefPFAM:PF08920
ProductSplicing factor 3B subunit 1
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Whole Genome Assembly and Annotation of Aspergillus Aspergillus niger KJC32021-10-31
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ch4supercontigch4:4928951..4932198 -
Powered by Drupal