You are here

Home

KJC3_006439-T1, KJC3_006439-T1 (mRNA) Aspergillus niger KJC3

Overview
NameKJC3_006439-T1
Unique NameKJC3_006439-T1
TypemRNA
OrganismAspergillus niger KJC3
Sequences
The following sequences are available for this feature:

mRNA from alignment at ch4:5703063..5704510-

Legend: polypeptideCDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
>KJC3_006439-T1 ID=KJC3_006439-T1|Name=KJC3_006439-T1|organism=Aspergillus niger KJC3|type=mRNA|length=1448bp|location=Sequence derived from alignment at ch4:5703063..5704510- (Aspergillus niger KJC3)
ATGGCCAATATGACATACGCGACATCTTCTCCGGCTGCCACTACTGGTGG
GCAAGGCAATAATCCTGTAAGTTTCTGAGACGATCTTATCATTGGAAGGC
GATGGTTCTTATCGAGCTACGCTGGTTTTGTTGCTTTTTTTCTCTTCTTG
CCTGGGGTGAAATCTCTGGTGTTCATGGTGACCCTTAATTTCCTGGGTTT
CTTTTTCTGTGCCAATCTGCTGTTATCAGCAGCCGCTGGGGGCTTGGCGC
CGCACCACCTGCTCCTTATCGCGCCAGCCCATCAAATCTCTCCCGATCTT
ATCAACCCAGCGCTCTTCCTCCTCCATCCACTATCAGTCCGCTTCCCCAT
CTTCTGTCTCTCCCTCCCCTCTTCCTCGCGTGATCCTACTGTTCCAAAAA
CCATGGCGACCACGTTGGCTGATCACAAACGTCCTCAATTACAGCCCGTA
TGCCAGAATTGCGGCACTTCTACGACACCTCTCTGGCGCAGGGACGAACT
CGGCTCCGTCCTTTGCAACGCCTGTGGCTTGTTCCTCAAACTACATGGCA
GGCCCCGTCCGATAAGCTTAAAGACCGATGTCATCAAAAGTCGCAACCGG
GTCAAGACTGCTGGTCAGGGCCCCAAGCGTAAGGTGAGTCTGTCGTCTAG
AAAATTTTTCCCTGGCTGTCCTATGTCTTTGTACACCTGAGATAACGATC
GCTAACATTCCTATCAATGTCTTATCAGTCCGGCGGTGCTATCGATACGA
ATGGCTTGTCTACCTCGAGGTCCGAAGCTGGGACGCCCCCCATGGGGTCC
CAAGGATACCGTCGCGCGTCGCGGAAGGCATCACCGGGCCATTCCGACCG
ATCCAACTCACCCGTCTCCCGTACCGAAACGCCTGGTATCCCTTCCATGC
AGCAACCACACCCTCAGTCGCAACACAATGCCAACATTGCGCCTCAGCAC
ATGTTCGATAGCGTCACAATCGGCGACCATGGGCTCAATCAGCCGAATGC
GCTGCCCTCGGTGCAGCCACGCCAGCCGTCGCCCACGGCGACCTCGGCGG
CTGTCGACCGCCATCTCGAGTCACCACAGACATACGATGGACTGCTCGCA
GCCAATACCTCGTTGAAGACTCGCGTGAGCGAATTGGAGTTTATCAATGA
ACTGTTCCGGGGCCGGGTGACGGAACTGGAGCAGAGCGGCGCGACTGCGC
GCCGATCGGAGATGATCGTCCGGGACTCGGAGGTACGGCTCCGGCGGTCT
CTGGAGGAGGCCCAACGGCGCGAAGACGATCTGAAACGGAGGATATCTGA
GCTGGAGCGACAGCTTACCGACCAAACCTCCTCTGCCAACCCGGCGGGCA
ATGACAGTCCCGGCGAGCCGCTGGCCAAGCGGATGCGGCTGTCCGACGTC
GTGGAGCAACCTGCGGAGTCGCCAACAAAATCCCCCAAGAGTGTCTAA
back to top

Coding sequence (CDS) from alignment at ch4:5703063..5704510-

>KJC3_006439-T1 ID=KJC3_006439-T1|Name=KJC3_006439-T1|organism=Aspergillus niger KJC3|type=CDS|length=2925bp|location=Sequence derived from alignment at ch4:5703063..5704510- (Aspergillus niger KJC3)
TCCGGCGGTGCTATCGATACGAATGGCTTGTCTACCTCGAGGTCCGAAGC
TGGGACGCCCCCCATGGGGTCCCAAGGATACCGTCGCGCGTCGCGGAAGG
CATCACCGGGCCATTCCGACCGATCCAACTCACCCGTCTCCCGTACCGAA
ACGCCTGGTATCCCTTCCATGCAGCAACCACACCCTCAGTCGCAACACAA
TGCCAACATTGCGCCTCAGCACATGTTCGATAGCGTCACAATCGGCGACC
ATGGGCTCAATCAGCCGAATGCGCTGCCCTCGGTGCAGCCACGCCAGCCG
TCGCCCACGGCGACCTCGGCGGCTGTCGACCGCCATCTCGAGTCACCACA
GACATACGATGGACTGCTCGCAGCCAATACCTCGTTGAAGACTCGCGTGA
GCGAATTGGAGTTTATCAATGAACTGTTCCGGGGCCGGGTGACGGAACTG
GAGCAGAGCGGCGCGACTGCGCGCCGATCGGAGATGATCGTCCGGGACTC
GGAGGTACGGCTCCGGCGGTCTCTGGAGGAGGCCCAACGGCGCGAAGACG
ATCTGAAACGGAGGATATCTGAGCTGGAGCGACAGCTTACCGACCAAACC
TCCTCTGCCAACCCGGCGGGCAATGACAGTCCCGGCGAGCCGCTGGCCAA
GCGGATGCGGCTGTCCGACGTCGTGGAGCAACCTGCGGAGTCGCCAACAA
AATCCCCCAAGAGTGTCTAACCCGTATGCCAGAATTGCGGCACTTCTACG
ACACCTCTCTGGCGCAGGGACGAACTCGGCTCCGTCCTTTGCAACGCCTG
TGGCTTGTTCCTCAAACTACATGGCAGGCCCCGTCCGATAAGCTTAAAGA
CCGATGTCATCAAAAGTCGCAACCGGGTCAAGACTGCTGGTCAGGGCCCC
AAGCGTAAGATGGCCAATATGACATACGCGACATCTTCTCCGGCTGCCAC
TACTGGTGGGCAAGGCAATAATCCTTCCGGCGGTGCTATCGATACGAATG
GCTTGTCTACCTCGAGGTCCGAAGCTGGGACGCCCCCCATGGGGTCCCAA
GGATACCGTCGCGCGTCGCGGAAGGCATCACCGGGCCATTCCGACCGATC
CAACTCACCCGTCTCCCGTACCGAAACGCCTGGTATCCCTTCCATGCAGC
AACCACACCCTCAGTCGCAACACAATGCCAACATTGCGCCTCAGCACATG
TTCGATAGCGTCACAATCGGCGACCATGGGCTCAATCAGCCGAATGCGCT
GCCCTCGGTGCAGCCACGCCAGCCGTCGCCCACGGCGACCTCGGCGGCTG
TCGACCGCCATCTCGAGTCACCACAGACATACGATGGACTGCTCGCAGCC
AATACCTCGTTGAAGACTCGCGTGAGCGAATTGGAGTTTATCAATGAACT
GTTCCGGGGCCGGGTGACGGAACTGGAGCAGAGCGGCGCGACTGCGCGCC
GATCGGAGATGATCGTCCGGGACTCGGAGGTACGGCTCCGGCGGTCTCTG
GAGGAGGCCCAACGGCGCGAAGACGATCTGAAACGGAGGATATCTGAGCT
GGAGCGACAGCTTACCGACCAAACCTCCTCTGCCAACCCGGCGGGCAATG
ACAGTCCCGGCGAGCCGCTGGCCAAGCGGATGCGGCTGTCCGACGTCGTG
GAGCAACCTGCGGAGTCGCCAACAAAATCCCCCAAGAGTGTCTAACCCGT
ATGCCAGAATTGCGGCACTTCTACGACACCTCTCTGGCGCAGGGACGAAC
TCGGCTCCGTCCTTTGCAACGCCTGTGGCTTGTTCCTCAAACTACATGGC
AGGCCCCGTCCGATAAGCTTAAAGACCGATGTCATCAAAAGTCGCAACCG
GGTCAAGACTGCTGGTCAGGGCCCCAAGCGTAAGATGGCCAATATGACAT
ACGCGACATCTTCTCCGGCTGCCACTACTGGTGGGCAAGGCAATAATCCT
TCCGGCGGTGCTATCGATACGAATGGCTTGTCTACCTCGAGGTCCGAAGC
TGGGACGCCCCCCATGGGGTCCCAAGGATACCGTCGCGCGTCGCGGAAGG
CATCACCGGGCCATTCCGACCGATCCAACTCACCCGTCTCCCGTACCGAA
ACGCCTGGTATCCCTTCCATGCAGCAACCACACCCTCAGTCGCAACACAA
TGCCAACATTGCGCCTCAGCACATGTTCGATAGCGTCACAATCGGCGACC
ATGGGCTCAATCAGCCGAATGCGCTGCCCTCGGTGCAGCCACGCCAGCCG
TCGCCCACGGCGACCTCGGCGGCTGTCGACCGCCATCTCGAGTCACCACA
GACATACGATGGACTGCTCGCAGCCAATACCTCGTTGAAGACTCGCGTGA
GCGAATTGGAGTTTATCAATGAACTGTTCCGGGGCCGGGTGACGGAACTG
GAGCAGAGCGGCGCGACTGCGCGCCGATCGGAGATGATCGTCCGGGACTC
GGAGGTACGGCTCCGGCGGTCTCTGGAGGAGGCCCAACGGCGCGAAGACG
ATCTGAAACGGAGGATATCTGAGCTGGAGCGACAGCTTACCGACCAAACC
TCCTCTGCCAACCCGGCGGGCAATGACAGTCCCGGCGAGCCGCTGGCCAA
GCGGATGCGGCTGTCCGACGTCGTGGAGCAACCTGCGGAGTCGCCAACAA
AATCCCCCAAGAGTGTCTAACCCGTATGCCAGAATTGCGGCACTTCTACG
ACACCTCTCTGGCGCAGGGACGAACTCGGCTCCGTCCTTTGCAACGCCTG
TGGCTTGTTCCTCAAACTACATGGCAGGCCCCGTCCGATAAGCTTAAAGA
CCGATGTCATCAAAAGTCGCAACCGGGTCAAGACTGCTGGTCAGGGCCCC
AAGCGTAAGATGGCCAATATGACATACGCGACATCTTCTCCGGCTGCCAC
TACTGGTGGGCAAGGCAATAATCCT
back to top
Annotated Terms
The following terms have been associated with this mRNA:
Vocabulary: Biological Process
TermDefinition
GO:0006355regulation of transcription, DNA-templated
Vocabulary: Molecular Function
TermDefinition
GO:0043565sequence-specific DNA binding
GO:0008270zinc ion binding
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
KJC3_006439KJC3_006439Aspergillus niger KJC3gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
KJC3_006439-T1KJC3_006439-T1-proteinAspergillus niger KJC3polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
KJC3_006439-T1.cdsKJC3_006439-T1.cdsAspergillus niger KJC3CDS


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
KJC3_006439-T1.exon3KJC3_006439-T1.exon3Aspergillus niger KJC3exon
KJC3_006439-T1.exon2KJC3_006439-T1.exon2Aspergillus niger KJC3exon
KJC3_006439-T1.exon1KJC3_006439-T1.exon1Aspergillus niger KJC3exon


Properties
Property NameValue
DBxrefInterPro:IPR013088
DBxrefInterPro:IPR000679
DBxrefPFAM:PF00320
Producthypothetical protein
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Whole Genome Assembly and Annotation of Aspergillus Aspergillus niger KJC32021-10-31
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ch4supercontigch4:5703063..5704510 -
Powered by Drupal