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Sequences
The following sequences are available for this feature:
mRNA from alignment at ch4:6050663..6052298+ Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >KJC3_006562-T1 ID=KJC3_006562-T1|Name=KJC3_006562-T1|organism=Aspergillus niger KJC3|type=mRNA|length=1636bp|location=Sequence derived from alignment at ch4:6050663..6052298+ (Aspergillus niger KJC3)
CGCTGCAGAGGAACATGGCCTTCCCGATCTCTCCAATGACAAGGAATCTA
TCACTCCTGCCCCTAATGATCCTCAGGTATATCCATGATCTCCTTCTCCG
CCATCCTGAACCCACTCGGTATGCTTGCTAACCTCTCAGAACTGGTCCAC
TGCTGCCAAACTCACCACCTACCTGACCATCTGTTTCTATACCTTCCTCG
CCAATGTCAACAGCAGCAACTTCACCGTCGCCACCAAGGCTATCATCGCC
GAATTCCACGTCTCCCAAACCCAGGCCGGCGAACTCGTCTGCTTCAATGT
CTTCCTCTTCGGCGTCGGCAACATCTTCTGGGTTCCACTGATGCGCGTCA
TCGGCAAACGCCCCGTCTATCTCATCTCCATGCTCTTCCTCTCCATGATG
AATGTCTGGTCGTCCCGCGCCACCAGCTACGGCGAGCTGCTCGCTTCACG
CATCCTCTCCGGGTTCGCCGCAGCCGCAGCCGATGCCACTGTCCCTGCCG
TGGTCAGCGACATGGTGGCTCCCCACGAACGCGGCCACTACCTCATGATC
TTCCATCTTGCCCTGACCGGTGGGCTTTTCCTCGGTCCTCTCATCAACGC
ATACCTGGTACAGGACGAGAACTGGCGTTGGATGTGCTACTTCCTCGCTA
TAGCGGTCGGATCGGTCTTTGTGGTCGCCATCTTCACCGTTCGCGAAACC
ACCTACCTCGCGCGACATGCCTCTTCCCAGAAGACGAGGTATTGGAGTTG
GCTTTCCATCACACGAGGATACAACCCGGACGCCTCGTTCCTCCAGACGG
TATGGGATATCCTCCGTAACGCGATGTACCCTCAACTCCTATGGTCAGCC
TTTACCATCGGGATCTCCGTAGGATGGTAAGCCATATTCTTATTCTTCCC
CTTTCTTTCTTTGCAAAGCCCCAAGCTAATAGAAGAAACAGGAACATCGT
CGTCCAACTCACTGCGTCCCGCACCTTCACAGCCCCGCCCTACAACTGGC
CCGCTGGCAGTATCGGCCTCCTCTCCCTCTCCGGCTTCATCGGCGCCCTG
CTAGCCTTCTACCTGGGTGGACGCCTCATCGACATCCTCTCCACATATTA
TACCCGGCGGCGCGGGGGCCAACGACTGCCCGAGTACCGACTCCCCGCCA
TGATCATCCCCGGCACGATCGGACCCGCGGGGATACTCATCTTCGGACTG
TGCGTGGCGAATCAAACGCACTGGGCTGGTGCGGCAGTGGGATATGCCAT
GCAGGCATTTGGGGTCGCGGCTATTTCTAATGTGGCGGTCACGTATTCGT
TGGATTGTTATAAGCCGGTGAGTTTTACCCCTTGCATGGTGGCGTTGTAT
AGCGTGGTTGGCGGGAGCACATGAACATGAACATGCTAATGTTGGCGTTG
TCTTTAGATCACGGGCGAAGCACTGGTCATTATTTTCGTGATCCGGAATA
CGATCGGTATGTTGTTGTCGCTATATGCGGCGGATTGGATCGCGAAACAG
GGCGCCGCGAAGGTGTTTGGAGAGATGACGGCGATTCAGGGGGCAAGTGT
ATTGCTGGCGGTGCCATTGTTTCTTTGGGGCGCTGGTCTACGCGAGTTGA
CGGGGCGGTATGGGCCCATGAAACGATTTGTGGGAG back to topCoding sequence (CDS) from alignment at ch4:6050663..6052298+ >KJC3_006562-T1 ID=KJC3_006562-T1|Name=KJC3_006562-T1|organism=Aspergillus niger KJC3|type=CDS|length=1938bp|location=Sequence derived from alignment at ch4:6050663..6052298+ (Aspergillus niger KJC3)
ATGCGCGTCATCGGCAAACGCCCCGTCTATCTCATCTCCATGCTCTTCCT
CTCCATGATGAATGTCTGGTCGTCCCGCGCCACCAGCTACGGCGAGCTGC
TCGCTTCACGCATCCTCTCCGGGTTCGCCGCAGCCGCAGCCGATGCCACT
GTCCCTGCCGTGGTCAGCGACATGGTGGCTCCCCACGAACGCGGCCACTA
CCTCATGATCTTCCATCTTGCCCTGACCGGTGGGCTTTTCCTCGGTCCTC
TCATCAACGCATACCTGGTACAGGACGAGAACTGGCGTTGGATGTGCTAC
TTCCTCGCTATAGCGGTCGGATCGGTCTTTGTGGTCGCCATCTTCACCGT
TCGCGAAACCACCTACCTCGCGCGACATGCCTCTTCCCAGAAGACGAGGT
ATTGGAGTTGGCTTTCCATCACACGAGGATACAACCCGGACGCCTCGTTC
CTCCAGACGGTATGGGATATCCTCCGTAACGCGATGTACCCTCAACTCCT
ATGGTCAGCCTTTACCATCGGGATCTCCGTAGGATGGAACATCGTCGTCC
AACTCACTGCGTCCCGCACCTTCACAGCCCCGCCCTACAACTGGCCCGCT
GGCAGTATCGGCCTCCTCTCCCTCTCCGGCTTCATCGGCGCCCTGCTAGC
CTTCTACCTGGGTGGACGCCTCATCGACATCCTCTCCACATATTATACCC
GGCGGCGCGGGGGCCAACGACTGCCCGAGTACCGACTCCCCGCCATGATC
ATCCCCGGCACGATCGGACCCGCGGGGATACTCATCTTCGGACTGTGCGT
GGCGAATCAAACGCACTGGGCTGGTGCGGCAGTGGGATATGCCATGCAGG
CATTTGGGGTCGCGGCTATTTCTAATGTGGCGGTCACGTATTCGTTGGAT
TGTTATAAGCCGGTGAGTTTTACCCCTTGCATGGTGGCGTTGTATAGCGT
GGTTGGCGGGAGCACATGAATGCGCGTCATCGGCAAACGCCCCGTCTATC
TCATCTCCATGCTCTTCCTCTCCATGATGAATGTCTGGTCGTCCCGCGCC
ACCAGCTACGGCGAGCTGCTCGCTTCACGCATCCTCTCCGGGTTCGCCGC
AGCCGCAGCCGATGCCACTGTCCCTGCCGTGGTCAGCGACATGGTGGCTC
CCCACGAACGCGGCCACTACCTCATGATCTTCCATCTTGCCCTGACCGGT
GGGCTTTTCCTCGGTCCTCTCATCAACGCATACCTGGTACAGGACGAGAA
CTGGCGTTGGATGTGCTACTTCCTCGCTATAGCGGTCGGATCGGTCTTTG
TGGTCGCCATCTTCACCGTTCGCGAAACCACCTACCTCGCGCGACATGCC
TCTTCCCAGAAGACGAGGTATTGGAGTTGGCTTTCCATCACACGAGGATA
CAACCCGGACGCCTCGTTCCTCCAGACGGTATGGGATATCCTCCGTAACG
CGATGTACCCTCAACTCCTATGGTCAGCCTTTACCATCGGGATCTCCGTA
GGATGGAACATCGTCGTCCAACTCACTGCGTCCCGCACCTTCACAGCCCC
GCCCTACAACTGGCCCGCTGGCAGTATCGGCCTCCTCTCCCTCTCCGGCT
TCATCGGCGCCCTGCTAGCCTTCTACCTGGGTGGACGCCTCATCGACATC
CTCTCCACATATTATACCCGGCGGCGCGGGGGCCAACGACTGCCCGAGTA
CCGACTCCCCGCCATGATCATCCCCGGCACGATCGGACCCGCGGGGATAC
TCATCTTCGGACTGTGCGTGGCGAATCAAACGCACTGGGCTGGTGCGGCA
GTGGGATATGCCATGCAGGCATTTGGGGTCGCGGCTATTTCTAATGTGGC
GGTCACGTATTCGTTGGATTGTTATAAGCCGGTGAGTTTTACCCCTTGCA
TGGTGGCGTTGTATAGCGTGGTTGGCGGGAGCACATGA back to top
Annotated Terms
The following terms have been associated with this mRNA:
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0022857 | transmembrane transporter activity |
Vocabulary: Biological Process
| Term | Definition |
|---|
| GO:0055085 | transmembrane transport |
Relationships
This mRNA is a part of the following gene feature(s):
The following five_prime_UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type |
|---|
| KJC3_006562-T1.utr5p1 | KJC3_006562-T1.utr5p1 | Aspergillus niger KJC3 | five_prime_UTR |
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following three_prime_UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type |
|---|
| KJC3_006562-T1.utr3p1 | KJC3_006562-T1.utr3p1 | Aspergillus niger KJC3 | three_prime_UTR |
The following polypeptide feature(s) derives from this mRNA:
Properties
| Property Name | Value |
|---|
| Note | antiSMASH:Cluster_4.12 |
| Note | SECRETED:SignalP(1-27) |
| Note | SMCOG1169:sugar transport protein |
| DBxref | InterPro:IPR036259 |
| DBxref | InterPro:IPR020846 |
| DBxref | InterPro:IPR011701 |
| DBxref | PFAM:PF07690 |
| Product | hypothetical protein |
Analyses
This mRNA is derived from or has results from the following analyses
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| ch4 | supercontig | ch4:6050663..6052298 + |
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