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Sequences
The following sequences are available for this feature:
mRNA from alignment at ch5:2384416..2386341- Legend: CDSpolypeptideexon Hold the cursor over a type above to highlight its positions in the sequence below. >KJC3_007409-T1 ID=KJC3_007409-T1|Name=KJC3_007409-T1|organism=Aspergillus niger KJC3|type=mRNA|length=1926bp|location=Sequence derived from alignment at ch5:2384416..2386341- (Aspergillus niger KJC3)
ATGCACCCGGCTCCCGCGACGACGGACCGGCGACGCAGCTGTCGCTTTTG
CCGCAGTCGCAAGCTCCGCTGCTCAGGCGCCAGCGTCTGCAGCGCCTGCA
AGGACCGCCAGATCGAATGTGTCTATGATCAGGGCGGCCCCAAAGGTCGT
CCCCGGGTCTCTGGCGCGCGCACCACCGGCCGTCTGGTTGCTGGCCAGCC
GGCGCCCGAGCCCGACATGAAACAGGCTCCCTGGACATCCCCCTCGAGTC
CGTCGTCCTCCGCGGCCGGCCAGCTCTTTTCGCCGCGTCTTAAGAGTGTT
GCCGATGCTCTATCCGAGGTGACGGCCGAGATTCAGGAGAAGCTACAGGG
TCCAAGGGTCGATGGGATGCCATGGAGCCAGGCCGGTTCTCCTCGCCAGC
GGCCGGCTAAACTGGGCTGTCGCGAGCTTATCCTGGTGCTGACCCAGGAT
ATCATCGACGCCACAGTGGCCCGTTTCAGCGGACTCGATTGCCTTGCTTT
CTTCGCTAATCAAAGTCAATTCTTCCGAGCCAGCCTGGCGTCCAGCAGTC
CTCCCGAACCGTCCCCCGCCCTCGAGCCGGCGCCGCTGGCGGCATACAAC
GGCTACCGCATCACCCAGCTCTTAGATGTGTGGTTTGGTGCGCACCCGTT
GTCCATGGCCCTTTCAAAGACGCTGCTGCTACGTGACGTCCGCAGCAACT
CCTACGACCCCCTGCTCCTGGCTGTCGTGCTAGGGGGCGGTCTGCTGGAA
CTGGGGGATACGGACACCCAGGTGGAATCCGAGCAGCTCCTGCACTGGGC
GTCGTCACGCCTACAGTATATTTCCACGGCGGCAGCCGACCTGTCAACTG
CACAGGCGCTCAGCTTGCTGGCCTGGCATGAGACATGTCAGGGAAACATT
ATCAAAGCAATGACCTACAGCATCTACGCGAATCGTACCGTAACCCGCCT
CATCATGGACACCTTGACCCGGTCCTCACGCGATGTCCGACAGATCAACG
GGGTCGACCTAGTGCAGATTGAGTTGGAGATGATGCACATCCTGGGTTGG
ATGACTCTCGCGCTGATGGTCTGGTATTTTACACACTTGGGGATTGTGGA
TGACAGTCTGCCAGCGCTCGCGATGATGTATGAGCACCCGCCCATGAACA
AGGATGCCTCCTTGGTGCTACGGCTCGACAAGGCGGCCGATAACTTGTCC
ACGCTCCCACACCAGTGGGCATGGATCCAGGAAATTTGGACCATCAGCCA
CATCACCTCCGCGGCTGTTCACCTCAACTCGATCTACCCTCGTCAGGCCA
GCGGGCCCACATCTCCCATAGCCCATCCTCACCACTCCTGGCAGAGTCAG
CTGCACGAGCAATTGCGCAACATCCAACTCTACAAGGTCGACATTGGCAA
CCTGTGTAGCGAGGCCCGCGCTGTCTTGTCGCGCAACGTGCAGATCATCG
AAGCCAACATGGAAGACCAGGTTGCCCAGACGTGGATTCTCACCGCGTAC
CGCACCTTGCTCATCCATCTCCTGTTCCCGCGCATGGAGACCATCGCCAT
CACAGCCGATCTCGTCCAGAACCTAGCCGACTGTCTTGCCTTCTTTGCGC
GCAGCTTCACCGTCCTCGTCCACATCTCTACTACTCATGCGCTCCCCCAG
TCGAGCATTCAGTCGTGCATCCGCTCCTACATGGCTGGTCTGGCCGCCTG
CGGTAGCGCCATTGACGCAATCTTCCTCATATCACCCAAACAACTTCAAT
GCTGGGAGCCGGAAATCCTACAGGGGCTAGCCCGACTACTCGAGCAAGCG
ACGAAGCTAGACACGCTCTTCACGGACGACACACTACTGACGGACTGGCG
GTGGCGAAATGTACAAAACCGCTTCCACCGGTTATCCAAATACAAAACGG
AGCTGCAAAGTGTGCCAGCCGGGTGA back to topCoding sequence (CDS) from alignment at ch5:2384416..2386341- >KJC3_007409-T1 ID=KJC3_007409-T1|Name=KJC3_007409-T1|organism=Aspergillus niger KJC3|type=CDS|length=1926bp|location=Sequence derived from alignment at ch5:2384416..2386341- (Aspergillus niger KJC3)
ATGCACCCGGCTCCCGCGACGACGGACCGGCGACGCAGCTGTCGCTTTTG
CCGCAGTCGCAAGCTCCGCTGCTCAGGCGCCAGCGTCTGCAGCGCCTGCA
AGGACCGCCAGATCGAATGTGTCTATGATCAGGGCGGCCCCAAAGGTCGT
CCCCGGGTCTCTGGCGCGCGCACCACCGGCCGTCTGGTTGCTGGCCAGCC
GGCGCCCGAGCCCGACATGAAACAGGCTCCCTGGACATCCCCCTCGAGTC
CGTCGTCCTCCGCGGCCGGCCAGCTCTTTTCGCCGCGTCTTAAGAGTGTT
GCCGATGCTCTATCCGAGGTGACGGCCGAGATTCAGGAGAAGCTACAGGG
TCCAAGGGTCGATGGGATGCCATGGAGCCAGGCCGGTTCTCCTCGCCAGC
GGCCGGCTAAACTGGGCTGTCGCGAGCTTATCCTGGTGCTGACCCAGGAT
ATCATCGACGCCACAGTGGCCCGTTTCAGCGGACTCGATTGCCTTGCTTT
CTTCGCTAATCAAAGTCAATTCTTCCGAGCCAGCCTGGCGTCCAGCAGTC
CTCCCGAACCGTCCCCCGCCCTCGAGCCGGCGCCGCTGGCGGCATACAAC
GGCTACCGCATCACCCAGCTCTTAGATGTGTGGTTTGGTGCGCACCCGTT
GTCCATGGCCCTTTCAAAGACGCTGCTGCTACGTGACGTCCGCAGCAACT
CCTACGACCCCCTGCTCCTGGCTGTCGTGCTAGGGGGCGGTCTGCTGGAA
CTGGGGGATACGGACACCCAGGTGGAATCCGAGCAGCTCCTGCACTGGGC
GTCGTCACGCCTACAGTATATTTCCACGGCGGCAGCCGACCTGTCAACTG
CACAGGCGCTCAGCTTGCTGGCCTGGCATGAGACATGTCAGGGAAACATT
ATCAAAGCAATGACCTACAGCATCTACGCGAATCGTACCGTAACCCGCCT
CATCATGGACACCTTGACCCGGTCCTCACGCGATGTCCGACAGATCAACG
GGGTCGACCTAGTGCAGATTGAGTTGGAGATGATGCACATCCTGGGTTGG
ATGACTCTCGCGCTGATGGTCTGGTATTTTACACACTTGGGGATTGTGGA
TGACAGTCTGCCAGCGCTCGCGATGATGTATGAGCACCCGCCCATGAACA
AGGATGCCTCCTTGGTGCTACGGCTCGACAAGGCGGCCGATAACTTGTCC
ACGCTCCCACACCAGTGGGCATGGATCCAGGAAATTTGGACCATCAGCCA
CATCACCTCCGCGGCTGTTCACCTCAACTCGATCTACCCTCGTCAGGCCA
GCGGGCCCACATCTCCCATAGCCCATCCTCACCACTCCTGGCAGAGTCAG
CTGCACGAGCAATTGCGCAACATCCAACTCTACAAGGTCGACATTGGCAA
CCTGTGTAGCGAGGCCCGCGCTGTCTTGTCGCGCAACGTGCAGATCATCG
AAGCCAACATGGAAGACCAGGTTGCCCAGACGTGGATTCTCACCGCGTAC
CGCACCTTGCTCATCCATCTCCTGTTCCCGCGCATGGAGACCATCGCCAT
CACAGCCGATCTCGTCCAGAACCTAGCCGACTGTCTTGCCTTCTTTGCGC
GCAGCTTCACCGTCCTCGTCCACATCTCTACTACTCATGCGCTCCCCCAG
TCGAGCATTCAGTCGTGCATCCGCTCCTACATGGCTGGTCTGGCCGCCTG
CGGTAGCGCCATTGACGCAATCTTCCTCATATCACCCAAACAACTTCAAT
GCTGGGAGCCGGAAATCCTACAGGGGCTAGCCCGACTACTCGAGCAAGCG
ACGAAGCTAGACACGCTCTTCACGGACGACACACTACTGACGGACTGGCG
GTGGCGAAATGTACAAAACCGCTTCCACCGGTTATCCAAATACAAAACGG
AGCTGCAAAGTGTGCCAGCCGGGTGA back to top
Annotated Terms
The following terms have been associated with this mRNA:
Vocabulary: Cellular Component
| Term | Definition |
|---|
| GO:0042025 | host cell nucleus |
Vocabulary: Biological Process
| Term | Definition |
|---|
| GO:0006355 | regulation of transcription, DNA-templated |
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0008270 | zinc ion binding |
| GO:0000981 | DNA-binding transcription factor activity, RNA polymerase II-specific |
Relationships
This mRNA is a part of the following gene feature(s):
The following CDS feature(s) are a part of this mRNA:
The following exon feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Properties
| Property Name | Value |
|---|
| DBxref | InterPro:IPR036864 |
| DBxref | InterPro:IPR001138 |
| DBxref | PFAM:PF00172 |
| Product | hypothetical protein |
Analyses
This mRNA is derived from or has results from the following analyses
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| ch5 | supercontig | ch5:2384416..2386341 - |
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