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KJC3_008510-T2, KJC3_008510-T2 (mRNA) Aspergillus niger KJC3

Overview
NameKJC3_008510-T2
Unique NameKJC3_008510-T2
TypemRNA
OrganismAspergillus niger KJC3
Sequences
The following sequences are available for this feature:

mRNA from alignment at ch6:2260622..2261541-

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>KJC3_008510-T2 ID=KJC3_008510-T2|Name=KJC3_008510-T2|organism=Aspergillus niger KJC3|type=mRNA|length=920bp|location=Sequence derived from alignment at ch6:2260622..2261541- (Aspergillus niger KJC3)
ATTACCAAAAATCTTTCGGAGAAACATTGTTACTGGTTGAATTTCTTCCG
CGCCGAACTGAGCCAGACTGCGGCGGATGATAGAAGAATAGCGCAGCACA
TAGGCAGTTTAGGCCATATCACATTTCCTGGAGAACTGAACAAGCCAATC
CGTAAAGATGGTATGTGTTAATGTTATTTCGATCTGAGAATACCCTCAAT
GGGCGGCTAACAAGCAATCAGGTTTTCATTTTGGGCGTGAACTTCCCCGA
GCGAAACCTCGTCAAGGCAAGCAACTCCGAACTTCCATTTTACCTTCAAC
GCCTGGTCTGACTGAAATCAGAAATCGCTCGAGTCCTTCTTCGGCATCGG
TAACTTGACCTCGACCCGTCTCCTTGCCCGCTTCCATATCCACCCAACAT
GCAAGGTTGGCGACTTGGCGAACAAGCAGGTCCTCGACATCACGGCCGCC
TTGTCCGACATGAAAATTGAGAACGATCTCCGCAGACAGTACCTCGATAA
CATCAAGCGTTTGAAGGAGACGGGAACCTACCGTGGTCGGCGTCATGCGC
TCGGCTTGCCCGTTCGGGGACAGCGGACGAGGAGCCAGGTTGGTTTATTC
TTACATCCAGTTTCCCCCAATATGATACTAGGGAATGTTGAAGCACTTCG
CTGGTGGACGTGGTCGTGGGGTATTGCACAAAAGAAGATTTATACTAACG
TAATCACTAGATCAAAACTGCTGTCAAGCTCAATCGTATGGAGAGAAGAC
TGTGAGGTTAACATGATTGATTCTATTATTGACCCCAGTGGTCCTGCGGC
TTCGTTTCAATTGGGGCATGGAATGGCGTTATAAATTCGCTTTTGTAAAT
TAGTGTTCTGGCTTGACCTTCTCCATCCTGGGGATGTATTTTATGTAGAC
AATGAAATATTGAAATCAAG
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Coding sequence (CDS) from alignment at ch6:2260622..2261541-

>KJC3_008510-T2 ID=KJC3_008510-T2|Name=KJC3_008510-T2|organism=Aspergillus niger KJC3|type=CDS|length=1683bp|location=Sequence derived from alignment at ch6:2260622..2261541- (Aspergillus niger KJC3)
AAATCGCTCGAGTCCTTCTTCGGCATCGGTAACTTGACCTCGACCCGTCT
CCTTGCCCGCTTCCATATCCACCCAACATGCAAGGTTGGCGACTTGGCGA
ACAAGCAGGTCCTCGACATCACGGCCGCCTTGTCCGACATGAAAATTGAG
AACGATCTCCGCAGACAGTACCTCGATAACATCAAGCGTTTGAAGGAGAC
GGGAACCTACCGTGGTCGGCGTCATGCGCTCGGCTTGCCCGTTCGGGGAC
AGCGGACGAGGAGCCAGGTTGGTTTATTCTTACATCCAGTTTCCCCCAAT
ATGATACTAGGGAATGTTGAAGCACTTCGCTGGTGGACGTGGTCGTGGGG
TATTGCACAAAAGAAGATTTATACTAACGTAATCACTAGATCAAAACTGC
TGTCAAGCTCAATCGTATGGAGAGAAGACTGTGAGGTTAACATGATTGAT
TCTATTATTGACCCCAGTGGTCCTGCGGCTTCGTTTCAATTGGGGCATGG
AATGGCGTTATAAGTTTTCATTTTGGGCGTGAACTTCCCCGAGCGAAACC
TCGTCAAGATGAAATCGCTCGAGTCCTTCTTCGGCATCGGTAACTTGACC
TCGACCCGTCTCCTTGCCCGCTTCCATATCCACCCAACATGCAAGGTTGG
CGACTTGGCGAACAAGCAGGTCCTCGACATCACGGCCGCCTTGTCCGACA
TGAAAATTGAGAACGATCTCCGCAGACAGTACCTCGATAACATCAAGCGT
TTGAAGGAGACGGGAACCTACCGTGGTCGGCGTCATGCGCTCGGCTTGCC
CGTTCGGGGACAGCGGACGAGGAGCCAGGTTGGTTTATTCTTACATCCAG
TTTCCCCCAATATGATACTAGGGAATGTTGAAGCACTTCGCTGGTGGACG
TGGTCGTGGGGTATTGCACAAAAGAAGATTTATACTAACGTAATCACTAG
ATCAAAACTGCTGTCAAGCTCAATCGTATGGAGAGAAGACTGTGAGGTTA
ACATGATTGATTCTATTATTGACCCCAGTGGTCCTGCGGCTTCGTTTCAA
TTGGGGCATGGAATGGCGTTATAAGTTTTCATTTTGGGCGTGAACTTCCC
CGAGCGAAACCTCGTCAAGATGAAATCGCTCGAGTCCTTCTTCGGCATCG
GTAACTTGACCTCGACCCGTCTCCTTGCCCGCTTCCATATCCACCCAACA
TGCAAGGTTGGCGACTTGGCGAACAAGCAGGTCCTCGACATCACGGCCGC
CTTGTCCGACATGAAAATTGAGAACGATCTCCGCAGACAGTACCTCGATA
ACATCAAGCGTTTGAAGGAGACGGGAACCTACCGTGGTCGGCGTCATGCG
CTCGGCTTGCCCGTTCGGGGACAGCGGACGAGGAGCCAGGTTGGTTTATT
CTTACATCCAGTTTCCCCCAATATGATACTAGGGAATGTTGAAGCACTTC
GCTGGTGGACGTGGTCGTGGGGTATTGCACAAAAGAAGATTTATACTAAC
GTAATCACTAGATCAAAACTGCTGTCAAGCTCAATCGTATGGAGAGAAGA
CTGTGAGGTTAACATGATTGATTCTATTATTGACCCCAGTGGTCCTGCGG
CTTCGTTTCAATTGGGGCATGGAATGGCGTTATAAGTTTTCATTTTGGGC
GTGAACTTCCCCGAGCGAAACCTCGTCAAGATG
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Annotated Terms
The following terms have been associated with this mRNA:
Vocabulary: Cellular Component
TermDefinition
GO:0005840ribosome
Vocabulary: Molecular Function
TermDefinition
GO:0003676nucleic acid binding
GO:0003735structural constituent of ribosome
GO:0003723RNA binding
Vocabulary: Biological Process
TermDefinition
GO:0006412translation
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
KJC3_008510KJC3_008510Aspergillus niger KJC3gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
KJC3_008510-T2KJC3_008510-T2-proteinAspergillus niger KJC3polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
KJC3_008510-T2.cdsKJC3_008510-T2.cdsAspergillus niger KJC3CDS


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
KJC3_008510-T2.utr3p1KJC3_008510-T2.utr3p1Aspergillus niger KJC3three_prime_UTR


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
KJC3_008510-T2.exon3KJC3_008510-T2.exon3Aspergillus niger KJC3exon
KJC3_008510-T2.exon2KJC3_008510-T2.exon2Aspergillus niger KJC3exon
KJC3_008510-T2.exon1KJC3_008510-T2.exon1Aspergillus niger KJC3exon


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
KJC3_008510-T2.utr5p1KJC3_008510-T2.utr5p1Aspergillus niger KJC3five_prime_UTR


Properties
Property NameValue
DBxrefInterPro:IPR010979
DBxrefInterPro:IPR018269
DBxrefInterPro:IPR027437
DBxrefInterPro:IPR001892
DBxrefPFAM:PF00416
Producthypothetical protein
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Whole Genome Assembly and Annotation of Aspergillus Aspergillus niger KJC32021-10-31
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ch6supercontigch6:2260622..2261541 -
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