|
Sequences
The following sequences are available for this feature:
mRNA from alignment at ch6:3483067..3484502+ Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >KJC3_008921-T1 ID=KJC3_008921-T1|Name=KJC3_008921-T1|organism=Aspergillus niger KJC3|type=mRNA|length=1436bp|location=Sequence derived from alignment at ch6:3483067..3484502+ (Aspergillus niger KJC3) GCTGGAGCCTTACGTTCACATTCCCATCTCTCCTCATCTGACCCCTTTCT
CTTAGTCCAACTCCTTTGCAGAATCAATCTATAACTCAGTTTACGATAAT
TGAAAAGCATGGCGGATCGTTTCCCTTCATTGGAGGACTTCTCTGCGGGT
GAGCAGCCCGCATCATTCCCGCCAACACTACACAACACTAACCCCGGTGT
CTAGGCCAGACCGAAGTCGTCGAGACCAACGGTGCCTCTGATGAAAGTGA
CTTCCTAGCTCGCGAACGGGCTATGCTCGGTGATGATGCAGAACAATTTG
CGACTCCCCAAGATCATGTCGCCGACGACGTAAACAATGACGACGACTTA
CTGGGAGGTGCGGATGCCGCTCCGTCCGCGGGTGGTGTTGAGCCTCAGGA
GATCGCTGGATTCGAGTCTTCCTTCCCTGCTCTCGACACACAGAACGAGG
TATGAGATATGCTGGGTCTATTATCGGGGAGTACTCTAAAATAACCACCA
ATTCACAGCAAGTTGCCCCTGGCGGCACAATCACTGGGTCGGGTGCCCCC
TTTCCACCTACTGGGTATTCCAACTACACAACTCAAGCCCCGGAGGAGGA
GCCAGAGCCCGTTAGGTAGGTCTCGTCATATATCAGCAGCCAGGCAATCC
GTTCCTTGACTGTGTGTCATGTCGCTTGTAGGGGGTCCATGTGCTAATGG
AGATGTCTTGCAGGGAATGGCGTGAGCGGCGAGATGCGGATATCCAACGT
CGTGCGGAGATCTCGGAGGAGAAGAAGGAATCTACCATAAAGAAGGCGCG
CGAGGATATTGATGACTTTTATGTCTCATACAACAACAAGACGGACAAGC
TTCGTGCCCAAACCCGCGCTGAGGCAGATCAGTTCCTGTCCAACCGGGAG
GACACTTCTTCTGGAGGTACTAGCTGGGAACGCATTGCCAAGCTTGTCGA
CGTCTCCGGAAAGGGAACCAAGGGTGGTGCCAGCGGTTCTGGTAAGGAGC
GCTTCCGAGAGCTGCTCCTTGATCTTAAGAAGGACCAGAATGCCCCCGGT
GTCAGCGGCGTTTAAGCAGCTGAACGCATAGTGTGTTCTAATTACAAGGA
CTCTGGATACGAAGAAGGCCGAAGTCCACAAGATAAGTCTTCGGTCTGAT
GATACGATCTCAGAGAGTGGGGAACAGTTGTAGCACTGGAGGTTACCCTT
GTCCTCTGCATTCCAGCGCCTTTTATTATCATGACCGTCATCATTCATAC
CACCTCCGTGCGCCTCAGATTCTCGACCCGATCGTAACTTCTTATACAGG
AGTTCGTCAAGTACTTGAGCTAATGGCTATTTCTCAGTACATGTGTCTTC
TATTCAATTCTTAAACACATGTCTTTTTATGTTGCTTATTTCCCCTTGAT
GTAGGTAGATTACACACATTGGAACATTTTAATTGC back to topCoding sequence (CDS) from alignment at ch6:3483067..3484502+ >KJC3_008921-T1 ID=KJC3_008921-T1|Name=KJC3_008921-T1|organism=Aspergillus niger KJC3|type=CDS|length=2976bp|location=Sequence derived from alignment at ch6:3483067..3484502+ (Aspergillus niger KJC3) ATGGCGGATCGTTTCCCTTCATTGGAGGACTTCTCTGCGGGCCAGACCGA AGTCGTCGAGACCAACGGTGCCTCTGATGAAAGTGACTTCCTAGCTCGCG AACGGGCTATGCTCGGTGATGATGCAGAACAATTTGCGACTCCCCAAGAT CATGTCGCCGACGACGTAAACAATGACGACGACTTACTGGGAGGTGCGGA TGCCGCTCCGTCCGCGGGTGGTGTTGAGCCTCAGGAGATCGCTGGATTCG AGTCTTCCTTCCCTGCTCTCGACACACAGAACGAGCAAGTTGCCCCTGGC GGCACAATCACTGGGTCGGGTGCCCCCTTTCCACCTACTGGGTATTCCAA CTACACAACTCAAGCCCCGGAGGAGGAGCCAGAGCCCGTTAGGGAATGGC GTGAGCGGCGAGATGCGGATATCCAACGTCGTGCGGAGATCTCGGAGGAG AAGAAGGAATCTACCATAAAGAAGGCGCGCGAGGATATTGATGACTTTTA TGTCTCATACAACAACAAGACGGACAAGCTTCGTGCCCAAACCCGCGCTG AGGCAGATCAGTTCCTGTCCAACCGGGAGGACACTTCTTCTGGAGGTACT AGCTGGGAACGCATTGCCAAGCTTGTCGACGTCTCCGGAAAGGGAACCAA GGGTGGTGCCAGCGGTTCTGGTAAGGAGCGCTTCCGAGAGCTGCTCCTTG ATCTTAAGAAGGACCAGAATGCCCCCGGTGTCAGCGGCGTTTAAATGGCG GATCGTTTCCCTTCATTGGAGGACTTCTCTGCGGGCCAGACCGAAGTCGT CGAGACCAACGGTGCCTCTGATGAAAGTGACTTCCTAGCTCGCGAACGGG CTATGCTCGGTGATGATGCAGAACAATTTGCGACTCCCCAAGATCATGTC GCCGACGACGTAAACAATGACGACGACTTACTGGGAGGTGCGGATGCCGC TCCGTCCGCGGGTGGTGTTGAGCCTCAGGAGATCGCTGGATTCGAGTCTT CCTTCCCTGCTCTCGACACACAGAACGAGCAAGTTGCCCCTGGCGGCACA ATCACTGGGTCGGGTGCCCCCTTTCCACCTACTGGGTATTCCAACTACAC AACTCAAGCCCCGGAGGAGGAGCCAGAGCCCGTTAGGGAATGGCGTGAGC GGCGAGATGCGGATATCCAACGTCGTGCGGAGATCTCGGAGGAGAAGAAG GAATCTACCATAAAGAAGGCGCGCGAGGATATTGATGACTTTTATGTCTC ATACAACAACAAGACGGACAAGCTTCGTGCCCAAACCCGCGCTGAGGCAG ATCAGTTCCTGTCCAACCGGGAGGACACTTCTTCTGGAGGTACTAGCTGG GAACGCATTGCCAAGCTTGTCGACGTCTCCGGAAAGGGAACCAAGGGTGG TGCCAGCGGTTCTGGTAAGGAGCGCTTCCGAGAGCTGCTCCTTGATCTTA AGAAGGACCAGAATGCCCCCGGTGTCAGCGGCGTTTAAATGGCGGATCGT TTCCCTTCATTGGAGGACTTCTCTGCGGGCCAGACCGAAGTCGTCGAGAC CAACGGTGCCTCTGATGAAAGTGACTTCCTAGCTCGCGAACGGGCTATGC TCGGTGATGATGCAGAACAATTTGCGACTCCCCAAGATCATGTCGCCGAC GACGTAAACAATGACGACGACTTACTGGGAGGTGCGGATGCCGCTCCGTC CGCGGGTGGTGTTGAGCCTCAGGAGATCGCTGGATTCGAGTCTTCCTTCC CTGCTCTCGACACACAGAACGAGCAAGTTGCCCCTGGCGGCACAATCACT GGGTCGGGTGCCCCCTTTCCACCTACTGGGTATTCCAACTACACAACTCA AGCCCCGGAGGAGGAGCCAGAGCCCGTTAGGGAATGGCGTGAGCGGCGAG ATGCGGATATCCAACGTCGTGCGGAGATCTCGGAGGAGAAGAAGGAATCT ACCATAAAGAAGGCGCGCGAGGATATTGATGACTTTTATGTCTCATACAA CAACAAGACGGACAAGCTTCGTGCCCAAACCCGCGCTGAGGCAGATCAGT TCCTGTCCAACCGGGAGGACACTTCTTCTGGAGGTACTAGCTGGGAACGC ATTGCCAAGCTTGTCGACGTCTCCGGAAAGGGAACCAAGGGTGGTGCCAG CGGTTCTGGTAAGGAGCGCTTCCGAGAGCTGCTCCTTGATCTTAAGAAGG ACCAGAATGCCCCCGGTGTCAGCGGCGTTTAAATGGCGGATCGTTTCCCT TCATTGGAGGACTTCTCTGCGGGCCAGACCGAAGTCGTCGAGACCAACGG TGCCTCTGATGAAAGTGACTTCCTAGCTCGCGAACGGGCTATGCTCGGTG ATGATGCAGAACAATTTGCGACTCCCCAAGATCATGTCGCCGACGACGTA AACAATGACGACGACTTACTGGGAGGTGCGGATGCCGCTCCGTCCGCGGG TGGTGTTGAGCCTCAGGAGATCGCTGGATTCGAGTCTTCCTTCCCTGCTC TCGACACACAGAACGAGCAAGTTGCCCCTGGCGGCACAATCACTGGGTCG GGTGCCCCCTTTCCACCTACTGGGTATTCCAACTACACAACTCAAGCCCC GGAGGAGGAGCCAGAGCCCGTTAGGGAATGGCGTGAGCGGCGAGATGCGG ATATCCAACGTCGTGCGGAGATCTCGGAGGAGAAGAAGGAATCTACCATA AAGAAGGCGCGCGAGGATATTGATGACTTTTATGTCTCATACAACAACAA GACGGACAAGCTTCGTGCCCAAACCCGCGCTGAGGCAGATCAGTTCCTGT CCAACCGGGAGGACACTTCTTCTGGAGGTACTAGCTGGGAACGCATTGCC AAGCTTGTCGACGTCTCCGGAAAGGGAACCAAGGGTGGTGCCAGCGGTTC TGGTAAGGAGCGCTTCCGAGAGCTGCTCCTTGATCTTAAGAAGGACCAGA ATGCCCCCGGTGTCAGCGGCGTTTAA back to top
Annotated Terms
The following terms have been associated with this mRNA:
Vocabulary: Cellular Component
Term | Definition |
GO:0030132 | clathrin coat of coated pit |
GO:0030130 | clathrin coat of trans-Golgi network vesicle |
Vocabulary: Molecular Function
Term | Definition |
GO:0005198 | structural molecule activity |
Vocabulary: Biological Process
Term | Definition |
GO:0016192 | vesicle-mediated transport |
GO:0006886 | intracellular protein transport |
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following five_prime_UTR feature(s) are a part of this mRNA:
Feature Name | Unique Name | Species | Type |
KJC3_008921-T1.utr5p1 | KJC3_008921-T1.utr5p1 | Aspergillus niger KJC3 | five_prime_UTR |
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following three_prime_UTR feature(s) are a part of this mRNA:
Feature Name | Unique Name | Species | Type |
KJC3_008921-T1.utr3p1 | KJC3_008921-T1.utr3p1 | Aspergillus niger KJC3 | three_prime_UTR |
Properties
Property Name | Value |
Note | BUSCO:EOG09264XOC |
DBxref | InterPro:IPR000996 |
DBxref | PFAM:PF01086 |
Product | hypothetical protein |
Analyses
This mRNA is derived from or has results from the following analyses
Alignments
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
ch6 | supercontig | ch6:3483067..3484502 + |
|