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Sequences
The following sequences are available for this feature:
mRNA from alignment at ch6:4946486..4947769+ Legend: exonpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >KJC3_009238-T1 ID=KJC3_009238-T1|Name=KJC3_009238-T1|organism=Aspergillus niger KJC3|type=mRNA|length=1284bp|location=Sequence derived from alignment at ch6:4946486..4947769+ (Aspergillus niger KJC3)
ATGACGCTATATCGCAATCTTCTGCTTTTGGCCAGCCTTGGACTGAGCTA
TGCTGCTCCCTCTAAGGTCCAACGTGCCCCTGATTCGTCCCTCCATGCTC
GTGCCGTCTGTACCCCAACCGCAGGAGGCGATTCTTCCACCGACGATGTG
CCCGCCATCACCGAGGCTCTCAGCTCGTGCGGGAACGGGGGCACCATTGT
ATTCCCGGAGGGCAGCACCTACTACCTCAACAGTGTGCTTGACTTGGGCA
ACTGCAGTAATTGCGACATCCAGGTGGAAGGTCTTTTGAAGTTCGCCAGC
GACACCGATTACTGGAGCGGTCGCACCGCCATGATCAGTGTGTCCGATGT
GGATGGCCTGAAGCTGCGCTCATTGACTGGGTCGGGTGTCATCGATGGCA
ATGGCCAGGATGCGTATGTGATCACCATTCTCGGAAGCATGCCTCCCAGT
CCATTTAGCTGACCGATGCAATTTAGGTGGGATCTCTTTGCGAGTGACAG
CAGTTACTCACGCCCAACGCTCCTGTACATCACTGGCGGCAGCAACCTCG
AAATCTCCGGGCTGCGTCAGAAGAACCCACCCAACGTGTTCAACTCAGTC
AAGGGTGGCGCCACTAACGTCGTCTTCTCCAACCTGAAGATGGATGCAAA
CTCCAAGTCAGACAACCCGCCCAAGAACACTGATGGCTTCGACATCGGCG
AGAGTACTTATGTAACCATCACTGAGGTCACCGTCGTCAACGATGATGAC
TGTGTGGCCTTCAAGCCCAGCTCCAACTACGTGACCGTCGACACCATCAG
CTGCACCGGCTCCCATGGCATTTCCGTGGGGTCGCTGGGCAAGTCCAGCG
ACGACTCGGTCAAGAATATCTATGTCACGGGCGCAACCATGATCAACTCC
ACCAAAGCCGCCGGAATCAAGACTTATCCGAGTGGAGGCGACCACGGCAC
TTCCACGGTCAGTAATGTGACGTTCACCGATTTCACCGTAGACAACTCCG
ATTATGCCTTCCAGATCCAGAGTTGCTATGGCGAGGACGATGACTACTGC
GAGGAGAACCCGGGCAACGCCAAGCTGACCGATATTGTCGTCTCGAGCTT
CAGCGGCACAACCAGTGACAAGTATGACCCGGTTGTGGCCAACATCGACT
GCGGTGCGGATGGGACGTGTGACATCTCCATCAGTGGGTTCGATGTCAAG
GCGCCGTCGGGCAAGTCTGAAGTGCTGTGCGCCAACACCCCGTCTGACTT
GGGCGTCACTTGCACTTCGGGAGCATCGGGCTAA back to topCoding sequence (CDS) from alignment at ch6:4946486..4947769+ >KJC3_009238-T1 ID=KJC3_009238-T1|Name=KJC3_009238-T1|organism=Aspergillus niger KJC3|type=CDS|length=2442bp|location=Sequence derived from alignment at ch6:4946486..4947769+ (Aspergillus niger KJC3)
ATGACGCTATATCGCAATCTTCTGCTTTTGGCCAGCCTTGGACTGAGCTA
TGCTGCTCCCTCTAAGGTCCAACGTGCCCCTGATTCGTCCCTCCATGCTC
GTGCCGTCTGTACCCCAACCGCAGGAGGCGATTCTTCCACCGACGATGTG
CCCGCCATCACCGAGGCTCTCAGCTCGTGCGGGAACGGGGGCACCATTGT
ATTCCCGGAGGGCAGCACCTACTACCTCAACAGTGTGCTTGACTTGGGCA
ACTGCAGTAATTGCGACATCCAGGTGGAAGGTCTTTTGAAGTTCGCCAGC
GACACCGATTACTGGAGCGGTCGCACCGCCATGATCAGTGTGTCCGATGT
GGATGGCCTGAAGCTGCGCTCATTGACTGGGTCGGGTGTCATCGATGGCA
ATGGCCAGGATGCGTGGGATCTCTTTGCGAGTGACAGCAGTTACTCACGC
CCAACGCTCCTGTACATCACTGGCGGCAGCAACCTCGAAATCTCCGGGCT
GCGTCAGAAGAACCCACCCAACGTGTTCAACTCAGTCAAGGGTGGCGCCA
CTAACGTCGTCTTCTCCAACCTGAAGATGGATGCAAACTCCAAGTCAGAC
AACCCGCCCAAGAACACTGATGGCTTCGACATCGGCGAGAGTACTTATGT
AACCATCACTGAGGTCACCGTCGTCAACGATGATGACTGTGTGGCCTTCA
AGCCCAGCTCCAACTACGTGACCGTCGACACCATCAGCTGCACCGGCTCC
CATGGCATTTCCGTGGGGTCGCTGGGCAAGTCCAGCGACGACTCGGTCAA
GAATATCTATGTCACGGGCGCAACCATGATCAACTCCACCAAAGCCGCCG
GAATCAAGACTTATCCGAGTGGAGGCGACCACGGCACTTCCACGGTCAGT
AATGTGACGTTCACCGATTTCACCGTAGACAACTCCGATTATGCCTTCCA
GATCCAGAGTTGCTATGGCGAGGACGATGACTACTGCGAGGAGAACCCGG
GCAACGCCAAGCTGACCGATATTGTCGTCTCGAGCTTCAGCGGCACAACC
AGTGACAAGTATGACCCGGTTGTGGCCAACATCGACTGCGGTGCGGATGG
GACGTGTGACATCTCCATCAGTGGGTTCGATGTCAAGGCGCCGTCGGGCA
AGTCTGAAGTGCTGTGCGCCAACACCCCGTCTGACTTGGGCGTCACTTGC
ACTTCGGGAGCATCGGGCTAAATGACGCTATATCGCAATCTTCTGCTTTT
GGCCAGCCTTGGACTGAGCTATGCTGCTCCCTCTAAGGTCCAACGTGCCC
CTGATTCGTCCCTCCATGCTCGTGCCGTCTGTACCCCAACCGCAGGAGGC
GATTCTTCCACCGACGATGTGCCCGCCATCACCGAGGCTCTCAGCTCGTG
CGGGAACGGGGGCACCATTGTATTCCCGGAGGGCAGCACCTACTACCTCA
ACAGTGTGCTTGACTTGGGCAACTGCAGTAATTGCGACATCCAGGTGGAA
GGTCTTTTGAAGTTCGCCAGCGACACCGATTACTGGAGCGGTCGCACCGC
CATGATCAGTGTGTCCGATGTGGATGGCCTGAAGCTGCGCTCATTGACTG
GGTCGGGTGTCATCGATGGCAATGGCCAGGATGCGTGGGATCTCTTTGCG
AGTGACAGCAGTTACTCACGCCCAACGCTCCTGTACATCACTGGCGGCAG
CAACCTCGAAATCTCCGGGCTGCGTCAGAAGAACCCACCCAACGTGTTCA
ACTCAGTCAAGGGTGGCGCCACTAACGTCGTCTTCTCCAACCTGAAGATG
GATGCAAACTCCAAGTCAGACAACCCGCCCAAGAACACTGATGGCTTCGA
CATCGGCGAGAGTACTTATGTAACCATCACTGAGGTCACCGTCGTCAACG
ATGATGACTGTGTGGCCTTCAAGCCCAGCTCCAACTACGTGACCGTCGAC
ACCATCAGCTGCACCGGCTCCCATGGCATTTCCGTGGGGTCGCTGGGCAA
GTCCAGCGACGACTCGGTCAAGAATATCTATGTCACGGGCGCAACCATGA
TCAACTCCACCAAAGCCGCCGGAATCAAGACTTATCCGAGTGGAGGCGAC
CACGGCACTTCCACGGTCAGTAATGTGACGTTCACCGATTTCACCGTAGA
CAACTCCGATTATGCCTTCCAGATCCAGAGTTGCTATGGCGAGGACGATG
ACTACTGCGAGGAGAACCCGGGCAACGCCAAGCTGACCGATATTGTCGTC
TCGAGCTTCAGCGGCACAACCAGTGACAAGTATGACCCGGTTGTGGCCAA
CATCGACTGCGGTGCGGATGGGACGTGTGACATCTCCATCAGTGGGTTCG
ATGTCAAGGCGCCGTCGGGCAAGTCTGAAGTGCTGTGCGCCAACACCCCG
TCTGACTTGGGCGTCACTTGCACTTCGGGAGCATCGGGCTAA back to top
Annotated Terms
The following terms have been associated with this mRNA:
Vocabulary: Biological Process
| Term | Definition |
|---|
| GO:0005975 | carbohydrate metabolic process |
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0004650 | polygalacturonase activity |
Relationships
This mRNA is a part of the following gene feature(s):
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Properties
| Property Name | Value |
|---|
| Note | SECRETED:SignalP(1-18) |
| Note | CAZy:GH28 |
| DBxref | InterPro:IPR011050 |
| DBxref | InterPro:IPR012334 |
| DBxref | InterPro:IPR000743 |
| DBxref | InterPro:IPR006626 |
| DBxref | PFAM:PF00295 |
| Product | hypothetical protein |
Analyses
This mRNA is derived from or has results from the following analyses
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| ch6 | supercontig | ch6:4946486..4947769 + |
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