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Sequences
The following sequences are available for this feature:
mRNA from alignment at ch7:882648..884647+ Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >KJC3_013101-T1 ID=KJC3_013101-T1|Name=KJC3_013101-T1|organism=Aspergillus niger KJC3|type=mRNA|length=2000bp|location=Sequence derived from alignment at ch7:882648..884647+ (Aspergillus niger KJC3)
CGGCAAGCGAGTCGGCCACGTAAGCGAGTCGGCCACCCCATCGAAACTCG
TCCACGCCTCCGAAAGCGATGCTATCCAAACAGCCATTACACCACCAAAA
ATGCCTAAATCATCAAAAGAGTTGGTGGAACAAGAGGGCAGGCTCTGTTT
AGCAGTTGAATCTATTCAGAAAGATCATACAAAATCTATTCGTGAAGCTG
CACGCGTTTTTCAAGTTCCCCGATCAACACTTCAAGATCGCCTAAATGGG
CTCAAATTTCGCAAGGATACTAGAGCCAACTCACATAAATTGACCTCTAT
AGAGGAAGAATCACTTGAAAAATGGATTATATCGCTAGATCAACGTGGTG
CACCACCAAAGCACTCTCAAGTCCGTGAAATGGCGAATCTACTACTTCAA
AAGCGTGGTCAAAATACAACTATCTCTGTCGGACAAAAATGGGTTACCAA
CTACATCTCAAGGCATGATTCCTTGAAAAGTCGATATAGCCGTCAAATCA
ACTACAAACGAGCGAAGTGTGAAGAACCTGAAGCTATTCAGATGTGGTTT
AAACGCGTACAAACTGCTATATCAACATACGGCATTGTCGACGAAGATAT
CTATAACTTCGATGAAACTGGCTTTACTATGGGTATCCTGGGTACTACTA
AAGTAGTAACACGCTCAACATGTCAAGGAAGACCCTTTCTTATACAGCCA
GGGAATCGCGAATGGATAACTTCAATTGAGTGTATCAACGCTGCTGGATG
GATGCTACCAGCATATTTAGTGTTAAAAGCAAAAACACATATTCAAGCTT
GGTATGAAGGAAGTCTACCATCTTCCTGGAGGATTGCTATATCCTCAAAT
GGATGGACTACACGAGAGATTGGGGAAGCATGGCTCAAAGATCACTTCAT
TCCATACATCAAAACACGAAGAACAGGTCAATATAGCCTCCTCGTACTTG
ACGGGCATGATTCGCATCTAACACCTCAATTTGATGACATATGTTATCAA
AATCAGATTATACCTGTCTGTATGCCTGCTAATTCCTCACATCTATGTCA
GCCTCTAGATGTTGCATGCTTTTCGCCTTTGAAGAAGGCCTACAAAGATC
AAGTTCAACAGCTTATCCGTACGGGATATCATCATATCGAGAAGATTGAT
TTTCTTGACATGTATCCGAAAGCCCATGCTCAAGCGTTTACTAAAGCAAA
TATACAAAGCGCTTTTAGAGCTTCAGGTCTTGTTCCTCTAGATCCCAGTA
AGATACTAGAGAATATGATTTTCAAGGAGACCAGCCGTCCGAGCAGTCAA
AGCACCTCCTCTTCTTCGATCTTTACAAAAACACCAAGGAATTCGAGGCA
ATTCAAGAAGTACGAGTCTACACTATCTCAATTACTTCAACAACAAGATA
CTCCAGCTACACCAATACAGTCAGCCTTATCGTACATCTTCAAAGGCGCG
GAGGTTGCTTTGAATCATACAGTACTACTTGAGCATGAAAATCGCCAACT
ACGTGAAGCTCTTGACAAACGAAACACCAAGCAGAAACGCAATCAACATC
AAATGGATGGTTTGAATGGCCTCACTGTACAAGAAGCGCTTGAGGCTTTC
AACCATGCTAGAATATTGGAAGAACAGGCTGGGGATGCAGGTCCTAGGGA
GGATCAACCACGCCGTCGGGCGCCTCCTAGGTGTAGCGCGTGCCATATTG
TAGGGCATATACGTACTAGATGTCCTAATCGAGCAGTATCTTGAGATAGA
GCGCTTTTAAGCGTTGAATTAGGTATTCAAAAAGCATCATTTTGTATGTA
AATCAGAATGATGATATACTACTAGCGGAGGTGGCCGACTCGCTTACGTG
GCCGACTCGCTTGCCGCTTACGTTATCGGCAGCTGGTTCTAGTAGTTGGA
GATTAACTTTAAGCTATACTATAGCAGTTAGTCTCCGGAAGAAGCCTCCC
TTACATCACAGTATAAACTTTTGAAGGTGGTGATGGAGAAATTGAAACAG
back to topCoding sequence (CDS) from alignment at ch7:882648..884647+ >KJC3_013101-T1 ID=KJC3_013101-T1|Name=KJC3_013101-T1|organism=Aspergillus niger KJC3|type=CDS|length=1722bp|location=Sequence derived from alignment at ch7:882648..884647+ (Aspergillus niger KJC3)
ATGAAGGAAGTCTACCATCTTCCTGGAGGATTGCTATATCCTCAAATGGA
TGGACTACACGAGAGATTGGGGAAGCATGGCTCAAAGATCACTTCATTCC
ATACATCAAAACACGAAGAACAGATTATACCTGTCTGTATGCCTGCTAAT
TCCTCACATCTATGTCAGCCTCTAGATGTTGCATGCTTTTCGCCTTTGAA
GAAGGCCTACAAAGATCAAGTTCAACAGCTTATCCGTACGGGATATCATC
ATATCGAGAAGATTGATTTTCTTGACATGTATCCGAAAGCCCATGCTCAA
GCGTTTACTAAAGCAAATATACAAAGCGCTTTTAGAGCTTCAGGTCTTGT
TCCTCTAGATCCCAGTAAGATACTAGAGAATATGATTTTCAAGGAGACCA
GCCGTCCGAGCAGTCAAAGCACCTCCTCTTCTTCGATCTTTACAAAAACA
CCAAGGAATTCGAGGCAATTCAAGAAGTACGAGTCTACACTATCTCAATT
ACTTCAACAACAAGATACTCCAGCTACACCAATACAGTCAGCCTTATCGT
ACATCTTCAAAGGCGCGGAGGTTGCTTTGAATCATACAGTACTACTTGAG
CATGAAAATCGCCAACTACGTGAAGCTCTTGACAAACGAAACACCAAGCA
GAAACGCAATCAACATCAAATGGATGGTTTGAATGGCCTCACTGTACAAG
AAGCGCTTGAGGCTTTCAACCATGCTAGAATATTGGAAGAACAGGCTGGG
GATGCAGGTCCTAGGGAGGATCAACCACGCCGTCGGGCGCCTCCTAGGTG
TAGCGCGTGCCATATTGTAGGGCATATACGTACTAGATGTCCTAATCGAG
CAGTATCTTGAATGAAGGAAGTCTACCATCTTCCTGGAGGATTGCTATAT
CCTCAAATGGATGGACTACACGAGAGATTGGGGAAGCATGGCTCAAAGAT
CACTTCATTCCATACATCAAAACACGAAGAACAGATTATACCTGTCTGTA
TGCCTGCTAATTCCTCACATCTATGTCAGCCTCTAGATGTTGCATGCTTT
TCGCCTTTGAAGAAGGCCTACAAAGATCAAGTTCAACAGCTTATCCGTAC
GGGATATCATCATATCGAGAAGATTGATTTTCTTGACATGTATCCGAAAG
CCCATGCTCAAGCGTTTACTAAAGCAAATATACAAAGCGCTTTTAGAGCT
TCAGGTCTTGTTCCTCTAGATCCCAGTAAGATACTAGAGAATATGATTTT
CAAGGAGACCAGCCGTCCGAGCAGTCAAAGCACCTCCTCTTCTTCGATCT
TTACAAAAACACCAAGGAATTCGAGGCAATTCAAGAAGTACGAGTCTACA
CTATCTCAATTACTTCAACAACAAGATACTCCAGCTACACCAATACAGTC
AGCCTTATCGTACATCTTCAAAGGCGCGGAGGTTGCTTTGAATCATACAG
TACTACTTGAGCATGAAAATCGCCAACTACGTGAAGCTCTTGACAAACGA
AACACCAAGCAGAAACGCAATCAACATCAAATGGATGGTTTGAATGGCCT
CACTGTACAAGAAGCGCTTGAGGCTTTCAACCATGCTAGAATATTGGAAG
AACAGGCTGGGGATGCAGGTCCTAGGGAGGATCAACCACGCCGTCGGGCG
CCTCCTAGGTGTAGCGCGTGCCATATTGTAGGGCATATACGTACTAGATG
TCCTAATCGAGCAGTATCTTGA back to top
Annotated Terms
The following terms have been associated with this mRNA:
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0003676 | nucleic acid binding |
Relationships
This mRNA is a part of the following gene feature(s):
The following five_prime_UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type |
|---|
| KJC3_013101-T1.utr5p1 | KJC3_013101-T1.utr5p1 | Aspergillus niger KJC3 | five_prime_UTR |
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following three_prime_UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type |
|---|
| KJC3_013101-T1.utr3p1 | KJC3_013101-T1.utr3p1 | Aspergillus niger KJC3 | three_prime_UTR |
The following polypeptide feature(s) derives from this mRNA:
Properties
| Property Name | Value |
|---|
| DBxref | InterPro:IPR004875 |
| Product | hypothetical protein |
Analyses
This mRNA is derived from or has results from the following analyses
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| ch7 | supercontig | ch7:882648..884647 + |
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