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Sequences
The following sequences are available for this feature:
mRNA from alignment at ch7:2358465..2360894+ Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >KJC3_010108-T1 ID=KJC3_010108-T1|Name=KJC3_010108-T1|organism=Aspergillus niger KJC3|type=mRNA|length=2430bp|location=Sequence derived from alignment at ch7:2358465..2360894+ (Aspergillus niger KJC3)
ATTTCCCCTCCCGTCAATAAATTGTCATACGATTTACTGATGCGGGCTTG
ACAATGCCACGAATGTCCGAATGATAGTCATCTCTCTACAGCGGTCCTTC
GAGTGCAGTGTGCCGACCCCAAATCTTATCAGCTGTGGCAGACGGCTTGT
GGGACAACTTGATCGGCTATGGGAGGTATTCCCTTCCGATCAACCGGATG
CAATACGTGCCGGCGACGAAAAGTCAAGGTAAGGCCTATCTTACAAGGCC
TGAACAGCCTTGGTTGCCCTCGGAGACGGAGCATGAATAGTCATCTAAAA
TGTGCCCCTTGTGTAGTGCGATGAGGCAAAGCCAGAATGCAATCGATGCA
TCAAGAATGGCCATGTCTGCACCGGCTATGAACGAAAAAGGGTCTTCATC
CACAAATCGTCCGAGGCCATAGAGGAGGGAGAACTGAAGCTCGTCCGTCG
CCCGCAGTCGACTTCCGGGAAGATTCCCGACCGTCAATTAACGCGAGTGG
AGCCAGGCTTTCCCCGATTAAATAACAATGCGGAGGTCCGATCACAGCTG
CTCGCCTCCTTTGTGGGGGGCTTTCTCCCTTCGTCACGGCATTTGCAAGA
TGGAAAAGATACAAATATCCTCAAAACGCTCCCCGAACTTTGTGGGAATA
GTCCTTTGCTGGACAGAGCGCTTCTATCGCTGTCTTCCGCTTTTCTTGCG
AAACAGCACAAGGATGATCGGTTACTTGGGTATAGTACGAAGCTCTATAA
CAATTCGATGGAGATCATGCATGGCAAGATCAAATCTGGCAAAGGCCTAG
GCCAAGATGTCCTATACACAACAGTTGTTTTTCAATTATATGAAGTCAGT
GTCACCATTCTCATCGCCTCTCGCTTTTTCTCCGCGGCTGGCCTAACACT
TCACAAAGTTGATCCACTCTTCCCCCCCGGGATTTATGGCTTGGATAGCA
CATGTGCAAGGCAGTAACGCAATCATTAAGCAGTGCAGGGTTAATAAAAA
AGGAACTATTGCCGAGAAGTTGTTTCACCGTCAACTTAAATTTGTCACTG
TCAGTCTCCTTGGCTTCGGATTGATCAACCAGCTGATCCTCGTAACGACT
GAGTCTTGCTGACTTTGAACCGCCCAGTTATGTGATGCCGTGGGGAGACG
CAAGGCCGCCACCCTCTATGAAGTTCTGACTACGCAAGAACGCTTATCGC
AGGGCTCAACGGAACTTGAGCCAATTGATGAACTGATGGACCTCTTGGCC
GAGTGCTCCGCTCTCATAGAACAAGTAGACACTTTCATCGAGCAACTGCC
TGCCAGCCCTGATGGTGATAAGAATAACGGCGAGAAGTTACTGGGTTCTT
GCTTATCGCTAGAAGAAAGACTACACCAGACATGCCTCAAGATGCAGGAG
AAACTGGGGGCGCCGTCGACTCTCACCCATGACGTGCCCTTGCGAGAAGA
CTTGAGAGCACACCTTGCCACCTCTTTATTCCCCGATCCCTTCCAATTCG
TCTCCCTGGCCTGCGCCGAATCGCACCTCATTTATTGGGCCACCTTGATA
ATACTGTACCCGCTAGTTGATGAGCTTCTCGACGTCCTTGGCTATCGCAG
AAATGACGTTACACCCTCGCAGTCCTGTGCCATTCATCCTCAGGCGATTG
AACAAAGACCCTTGGGCGTGGATGTGGCAACAGATTTCACAGCGCTGGCG
GAGCATTATGCAGACGAGGTCTGCCGATCCGTTATGTACTGTACACAGTC
TGACATGAATACCCTGGGCGCACAACACCTGCTTGCTCCTTTCAGCCAAT
GCGCGCAATTCTTTCAGGTTCATGAACTGGCGCAAAAATACAGGTGGTGT
CAGGGGGTGTTTGTGCTTCTTGACTCGCTAGGTCTGGGAATAGCTCCGTT
GCTGAAGGACATGGTTTGGCCACAATACCGTTCCGCTCGACTACGTAGGT
CTTTGTCATCCGTGGGAAAAGTCCCATGATGAGATTTGGCCTGTTCAACG
TGCTTCCCGTGCCAAGGTGGCAGGTCGCATTTGAGCGTGTCGGACGCACG
CTTGGAAGCACGGGATTAAACTACCCACCAAGATATCATAGACGGCTATC
AGCCATCTAGCAACATGGTCTTAACCTAGGATCACCAACCGACTTGTTGG
GCTGGATTATAACTAGGAACAGAGCAAGTCAGTCGATGTGAGTAGCAGCA
GCTTATTGTTTGCGGGACGAGACACCGAGCCGCTAGCGACACATCACCAC
TTGTCCTGCTTTGCGCCCTGTACTAGATGCATTGAAGCACGTCGAAGGCC
TTAATGCTCCCGAGCCAGGAAATTTCAGGAAAGGCCGGGCTAACCGCGAC
ACTGGGTTCACCAGGTAGCAGGCCCAAGCTGTGGCCTCTTGCACAACACT
GGTATAACCGAAGCGGAACTCGGCTGAGAG back to topCoding sequence (CDS) from alignment at ch7:2358465..2360894+ >KJC3_010108-T1 ID=KJC3_010108-T1|Name=KJC3_010108-T1|organism=Aspergillus niger KJC3|type=CDS|length=6324bp|location=Sequence derived from alignment at ch7:2358465..2360894+ (Aspergillus niger KJC3)
ATGGGAGGTATTCCCTTCCGATCAACCGGATGCAATACGTGCCGGCGACG
AAAAGTCAAGTGCGATGAGGCAAAGCCAGAATGCAATCGATGCATCAAGA
ATGGCCATGTCTGCACCGGCTATGAACGAAAAAGGGTCTTCATCCACAAA
TCGTCCGAGGCCATAGAGGAGGGAGAACTGAAGCTCGTCCGTCGCCCGCA
GTCGACTTCCGGGAAGATTCCCGACCGTCAATTAACGCGAGTGGAGCCAG
GCTTTCCCCGATTAAATAACAATGCGGAGGTCCGATCACAGCTGCTCGCC
TCCTTTGTGGGGGGCTTTCTCCCTTCGTCACGGCATTTGCAAGATGGAAA
AGATACAAATATCCTCAAAACGCTCCCCGAACTTTGTGGGAATAGTCCTT
TGCTGGACAGAGCGCTTCTATCGCTGTCTTCCGCTTTTCTTGCGAAACAG
CACAAGGATGATCGGTTACTTGGGTATAGTACGAAGCTCTATAACAATTC
GATGGAGATCATGCATGGCAAGATCAAATCTGGCAAAGGCCTAGGCCAAG
ATGTCCTATACACAACAGTTGTTTTTCAATTATATGAATTGATCCACTCT
TCCCCCCCGGGATTTATGGCTTGGATAGCACATGTGCAAGGCAGTAACGC
AATCATTAAGCAGTGCAGGGTTAATAAAAAAGGAACTATTGCCGAGAAGT
TGTTTCACCGTCAACTTAAATTTGTCACTTTATGTGATGCCGTGGGGAGA
CGCAAGGCCGCCACCCTCTATGAAGTTCTGACTACGCAAGAACGCTTATC
GCAGGGCTCAACGGAACTTGAGCCAATTGATGAACTGATGGACCTCTTGG
CCGAGTGCTCCGCTCTCATAGAACAAGTAGACACTTTCATCGAGCAACTG
CCTGCCAGCCCTGATGGTGATAAGAATAACGGCGAGAAGTTACTGGGTTC
TTGCTTATCGCTAGAAGAAAGACTACACCAGACATGCCTCAAGATGCAGG
AGAAACTGGGGGCGCCGTCGACTCTCACCCATGACGTGCCCTTGCGAGAA
GACTTGAGAGCACACCTTGCCACCTCTTTATTCCCCGATCCCTTCCAATT
CGTCTCCCTGGCCTGCGCCGAATCGCACCTCATTTATTGGGCCACCTTGA
TAATACTGTACCCGCTAGTTGATGAGCTTCTCGACGTCCTTGGCTATCGC
AGAAATGACGTTACACCCTCGCAGTCCTGTGCCATTCATCCTCAGGCGAT
TGAACAAAGACCCTTGGGCGTGGATGTGGCAACAGATTTCACAGCGCTGG
CGGAGCATTATGCAGACGAGGTCTGCCGATCCGTTATGTACTGTACACAG
TCTGACATGAATACCCTGGGCGCACAACACCTGCTTGCTCCTTTCAGCCA
ATGCGCGCAATTCTTTCAGGTTCATGAACTGGCGCAAAAATACAGGTGGT
GTCAGGGGGTGTTTGTGCTTCTTGACTCGCTAGGTCTGGGAATAGCTCCG
TTGCTGAAGGACATGGTTTGGCCACAATACCGTTCCGCTCGACTACGTAG
GTCTTTGTCATCCGTGGGAAAAGTCCCATGAATGGGAGGTATTCCCTTCC
GATCAACCGGATGCAATACGTGCCGGCGACGAAAAGTCAAGTGCGATGAG
GCAAAGCCAGAATGCAATCGATGCATCAAGAATGGCCATGTCTGCACCGG
CTATGAACGAAAAAGGGTCTTCATCCACAAATCGTCCGAGGCCATAGAGG
AGGGAGAACTGAAGCTCGTCCGTCGCCCGCAGTCGACTTCCGGGAAGATT
CCCGACCGTCAATTAACGCGAGTGGAGCCAGGCTTTCCCCGATTAAATAA
CAATGCGGAGGTCCGATCACAGCTGCTCGCCTCCTTTGTGGGGGGCTTTC
TCCCTTCGTCACGGCATTTGCAAGATGGAAAAGATACAAATATCCTCAAA
ACGCTCCCCGAACTTTGTGGGAATAGTCCTTTGCTGGACAGAGCGCTTCT
ATCGCTGTCTTCCGCTTTTCTTGCGAAACAGCACAAGGATGATCGGTTAC
TTGGGTATAGTACGAAGCTCTATAACAATTCGATGGAGATCATGCATGGC
AAGATCAAATCTGGCAAAGGCCTAGGCCAAGATGTCCTATACACAACAGT
TGTTTTTCAATTATATGAATTGATCCACTCTTCCCCCCCGGGATTTATGG
CTTGGATAGCACATGTGCAAGGCAGTAACGCAATCATTAAGCAGTGCAGG
GTTAATAAAAAAGGAACTATTGCCGAGAAGTTGTTTCACCGTCAACTTAA
ATTTGTCACTTTATGTGATGCCGTGGGGAGACGCAAGGCCGCCACCCTCT
ATGAAGTTCTGACTACGCAAGAACGCTTATCGCAGGGCTCAACGGAACTT
GAGCCAATTGATGAACTGATGGACCTCTTGGCCGAGTGCTCCGCTCTCAT
AGAACAAGTAGACACTTTCATCGAGCAACTGCCTGCCAGCCCTGATGGTG
ATAAGAATAACGGCGAGAAGTTACTGGGTTCTTGCTTATCGCTAGAAGAA
AGACTACACCAGACATGCCTCAAGATGCAGGAGAAACTGGGGGCGCCGTC
GACTCTCACCCATGACGTGCCCTTGCGAGAAGACTTGAGAGCACACCTTG
CCACCTCTTTATTCCCCGATCCCTTCCAATTCGTCTCCCTGGCCTGCGCC
GAATCGCACCTCATTTATTGGGCCACCTTGATAATACTGTACCCGCTAGT
TGATGAGCTTCTCGACGTCCTTGGCTATCGCAGAAATGACGTTACACCCT
CGCAGTCCTGTGCCATTCATCCTCAGGCGATTGAACAAAGACCCTTGGGC
GTGGATGTGGCAACAGATTTCACAGCGCTGGCGGAGCATTATGCAGACGA
GGTCTGCCGATCCGTTATGTACTGTACACAGTCTGACATGAATACCCTGG
GCGCACAACACCTGCTTGCTCCTTTCAGCCAATGCGCGCAATTCTTTCAG
GTTCATGAACTGGCGCAAAAATACAGGTGGTGTCAGGGGGTGTTTGTGCT
TCTTGACTCGCTAGGTCTGGGAATAGCTCCGTTGCTGAAGGACATGGTTT
GGCCACAATACCGTTCCGCTCGACTACGTAGGTCTTTGTCATCCGTGGGA
AAAGTCCCATGAATGGGAGGTATTCCCTTCCGATCAACCGGATGCAATAC
GTGCCGGCGACGAAAAGTCAAGTGCGATGAGGCAAAGCCAGAATGCAATC
GATGCATCAAGAATGGCCATGTCTGCACCGGCTATGAACGAAAAAGGGTC
TTCATCCACAAATCGTCCGAGGCCATAGAGGAGGGAGAACTGAAGCTCGT
CCGTCGCCCGCAGTCGACTTCCGGGAAGATTCCCGACCGTCAATTAACGC
GAGTGGAGCCAGGCTTTCCCCGATTAAATAACAATGCGGAGGTCCGATCA
CAGCTGCTCGCCTCCTTTGTGGGGGGCTTTCTCCCTTCGTCACGGCATTT
GCAAGATGGAAAAGATACAAATATCCTCAAAACGCTCCCCGAACTTTGTG
GGAATAGTCCTTTGCTGGACAGAGCGCTTCTATCGCTGTCTTCCGCTTTT
CTTGCGAAACAGCACAAGGATGATCGGTTACTTGGGTATAGTACGAAGCT
CTATAACAATTCGATGGAGATCATGCATGGCAAGATCAAATCTGGCAAAG
GCCTAGGCCAAGATGTCCTATACACAACAGTTGTTTTTCAATTATATGAA
TTGATCCACTCTTCCCCCCCGGGATTTATGGCTTGGATAGCACATGTGCA
AGGCAGTAACGCAATCATTAAGCAGTGCAGGGTTAATAAAAAAGGAACTA
TTGCCGAGAAGTTGTTTCACCGTCAACTTAAATTTGTCACTTTATGTGAT
GCCGTGGGGAGACGCAAGGCCGCCACCCTCTATGAAGTTCTGACTACGCA
AGAACGCTTATCGCAGGGCTCAACGGAACTTGAGCCAATTGATGAACTGA
TGGACCTCTTGGCCGAGTGCTCCGCTCTCATAGAACAAGTAGACACTTTC
ATCGAGCAACTGCCTGCCAGCCCTGATGGTGATAAGAATAACGGCGAGAA
GTTACTGGGTTCTTGCTTATCGCTAGAAGAAAGACTACACCAGACATGCC
TCAAGATGCAGGAGAAACTGGGGGCGCCGTCGACTCTCACCCATGACGTG
CCCTTGCGAGAAGACTTGAGAGCACACCTTGCCACCTCTTTATTCCCCGA
TCCCTTCCAATTCGTCTCCCTGGCCTGCGCCGAATCGCACCTCATTTATT
GGGCCACCTTGATAATACTGTACCCGCTAGTTGATGAGCTTCTCGACGTC
CTTGGCTATCGCAGAAATGACGTTACACCCTCGCAGTCCTGTGCCATTCA
TCCTCAGGCGATTGAACAAAGACCCTTGGGCGTGGATGTGGCAACAGATT
TCACAGCGCTGGCGGAGCATTATGCAGACGAGGTCTGCCGATCCGTTATG
TACTGTACACAGTCTGACATGAATACCCTGGGCGCACAACACCTGCTTGC
TCCTTTCAGCCAATGCGCGCAATTCTTTCAGGTTCATGAACTGGCGCAAA
AATACAGGTGGTGTCAGGGGGTGTTTGTGCTTCTTGACTCGCTAGGTCTG
GGAATAGCTCCGTTGCTGAAGGACATGGTTTGGCCACAATACCGTTCCGC
TCGACTACGTAGGTCTTTGTCATCCGTGGGAAAAGTCCCATGAATGGGAG
GTATTCCCTTCCGATCAACCGGATGCAATACGTGCCGGCGACGAAAAGTC
AAGTGCGATGAGGCAAAGCCAGAATGCAATCGATGCATCAAGAATGGCCA
TGTCTGCACCGGCTATGAACGAAAAAGGGTCTTCATCCACAAATCGTCCG
AGGCCATAGAGGAGGGAGAACTGAAGCTCGTCCGTCGCCCGCAGTCGACT
TCCGGGAAGATTCCCGACCGTCAATTAACGCGAGTGGAGCCAGGCTTTCC
CCGATTAAATAACAATGCGGAGGTCCGATCACAGCTGCTCGCCTCCTTTG
TGGGGGGCTTTCTCCCTTCGTCACGGCATTTGCAAGATGGAAAAGATACA
AATATCCTCAAAACGCTCCCCGAACTTTGTGGGAATAGTCCTTTGCTGGA
CAGAGCGCTTCTATCGCTGTCTTCCGCTTTTCTTGCGAAACAGCACAAGG
ATGATCGGTTACTTGGGTATAGTACGAAGCTCTATAACAATTCGATGGAG
ATCATGCATGGCAAGATCAAATCTGGCAAAGGCCTAGGCCAAGATGTCCT
ATACACAACAGTTGTTTTTCAATTATATGAATTGATCCACTCTTCCCCCC
CGGGATTTATGGCTTGGATAGCACATGTGCAAGGCAGTAACGCAATCATT
AAGCAGTGCAGGGTTAATAAAAAAGGAACTATTGCCGAGAAGTTGTTTCA
CCGTCAACTTAAATTTGTCACTTTATGTGATGCCGTGGGGAGACGCAAGG
CCGCCACCCTCTATGAAGTTCTGACTACGCAAGAACGCTTATCGCAGGGC
TCAACGGAACTTGAGCCAATTGATGAACTGATGGACCTCTTGGCCGAGTG
CTCCGCTCTCATAGAACAAGTAGACACTTTCATCGAGCAACTGCCTGCCA
GCCCTGATGGTGATAAGAATAACGGCGAGAAGTTACTGGGTTCTTGCTTA
TCGCTAGAAGAAAGACTACACCAGACATGCCTCAAGATGCAGGAGAAACT
GGGGGCGCCGTCGACTCTCACCCATGACGTGCCCTTGCGAGAAGACTTGA
GAGCACACCTTGCCACCTCTTTATTCCCCGATCCCTTCCAATTCGTCTCC
CTGGCCTGCGCCGAATCGCACCTCATTTATTGGGCCACCTTGATAATACT
GTACCCGCTAGTTGATGAGCTTCTCGACGTCCTTGGCTATCGCAGAAATG
ACGTTACACCCTCGCAGTCCTGTGCCATTCATCCTCAGGCGATTGAACAA
AGACCCTTGGGCGTGGATGTGGCAACAGATTTCACAGCGCTGGCGGAGCA
TTATGCAGACGAGGTCTGCCGATCCGTTATGTACTGTACACAGTCTGACA
TGAATACCCTGGGCGCACAACACCTGCTTGCTCCTTTCAGCCAATGCGCG
CAATTCTTTCAGGTTCATGAACTGGCGCAAAAATACAGGTGGTGTCAGGG
GGTGTTTGTGCTTCTTGACTCGCTAGGTCTGGGAATAGCTCCGTTGCTGA
AGGACATGGTTTGGCCACAATACCGTTCCGCTCGACTACGTAGGTCTTTG
TCATCCGTGGGAAAAGTCCCATGA back to top
Annotated Terms
The following terms have been associated with this mRNA:
Vocabulary: Cellular Component
| Term | Definition |
|---|
| GO:0042025 | host cell nucleus |
Vocabulary: Biological Process
| Term | Definition |
|---|
| GO:0006355 | regulation of transcription, DNA-templated |
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0008270 | zinc ion binding |
| GO:0000981 | DNA-binding transcription factor activity, RNA polymerase II-specific |
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following five_prime_UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type |
|---|
| KJC3_010108-T1.utr5p1 | KJC3_010108-T1.utr5p1 | Aspergillus niger KJC3 | five_prime_UTR |
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following three_prime_UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type |
|---|
| KJC3_010108-T1.utr3p1 | KJC3_010108-T1.utr3p1 | Aspergillus niger KJC3 | three_prime_UTR |
Properties
| Property Name | Value |
|---|
| DBxref | InterPro:IPR021858 |
| DBxref | InterPro:IPR036864 |
| DBxref | InterPro:IPR001138 |
| DBxref | PFAM:PF00172 |
| DBxref | PFAM:PF11951 |
| Product | hypothetical protein |
Analyses
This mRNA is derived from or has results from the following analyses
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| ch7 | supercontig | ch7:2358465..2360894 + |
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