|
|
Sequences
The following sequences are available for this feature:
mRNA from alignment at ch7:2809236..2809983- Legend: exonfive_prime_UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >KJC3_010243-T1 ID=KJC3_010243-T1|Name=KJC3_010243-T1|organism=Aspergillus niger KJC3|type=mRNA|length=748bp|location=Sequence derived from alignment at ch7:2809236..2809983- (Aspergillus niger KJC3)
ACTTCCTTCTGCTGGCAGCCTGGAACATAAACACGAAATTCAGAGCAATT
CAATATGACAGACGTCAAAGACACCCGCAAACCAGACCAAGTCTTCACAT
CAGCGGATCGTATCCGGCAATTGAACGAAATAGACAAGGTAAGTTCACAG
AAAAGAAATAGAGGCCGGGATTAATTCCCCGCGCGACACCACCGAAATGC
TGCCTAGCTAGCGATGGATACTCAACTTCCACGCTACTACATTATTTATG
CTGTGTCATTGACTTCATTCCACCCTCACTAATCTCCGCAAATTACTACA
GGATGTGGCCAAGCTAATTCACTCCGCGGGTCTTGCAATTCAAGCCCTGA
CCAACGCTCGGTCGGGCGAGTCACCTTCGGACAACTCCCTCGCATCCCAC
CAAGCCCGCTTCAAGGAGGCCACTTCGCAATACTTCGCCCTCCTTTCGTC
CATTGACGTTCGACTCCGTCGTCAGGTGTATGCTCTGGAGGAGGCGTCTA
TTCTTGCGCCGGAGACAGCGTCGAGAGCGGAAAATCTACCCGGGGCGAGC
AGTGGCGGGGTGGCGGGCGCATCGTCGAACCCGCTCGATGTTAGTTGGCT
CAACAGTCGGAAGGACACGGTGGGCAAGGATAAGGAAGCGGAGTTGTGGG
CTGCTGCGAGGGAGTTCGTGGAGCGGATTAGCAATCCGGCGTCTGTGAGC
TCGGGAGCGAAGACAGAGAGCGAGCAGGAGAAGATGGAGGTTGATTAG back to topCoding sequence (CDS) from alignment at ch7:2809236..2809983- >KJC3_010243-T1 ID=KJC3_010243-T1|Name=KJC3_010243-T1|organism=Aspergillus niger KJC3|type=CDS|length=1062bp|location=Sequence derived from alignment at ch7:2809236..2809983- (Aspergillus niger KJC3)
GATGTGGCCAAGCTAATTCACTCCGCGGGTCTTGCAATTCAAGCCCTGAC
CAACGCTCGGTCGGGCGAGTCACCTTCGGACAACTCCCTCGCATCCCACC
AAGCCCGCTTCAAGGAGGCCACTTCGCAATACTTCGCCCTCCTTTCGTCC
ATTGACGTTCGACTCCGTCGTCAGGTGTATGCTCTGGAGGAGGCGTCTAT
TCTTGCGCCGGAGACAGCGTCGAGAGCGGAAAATCTACCCGGGGCGAGCA
GTGGCGGGGTGGCGGGCGCATCGTCGAACCCGCTCGATGTTAGTTGGCTC
AACAGTCGGAAGGACACGGTGGGCAAGGATAAGGAAGCGGAGTTGTGGGC
TGCTGCGAGGGAGTTCGTGGAGCGGATTAGCAATCCGGCGTCTGTGAGCT
CGGGAGCGAAGACAGAGAGCGAGCAGGAGAAGATGGAGGTTGATTAGATG
ACAGACGTCAAAGACACCCGCAAACCAGACCAAGTCTTCACATCAGCGGA
TCGTATCCGGCAATTGAACGAAATAGACAAGGATGTGGCCAAGCTAATTC
ACTCCGCGGGTCTTGCAATTCAAGCCCTGACCAACGCTCGGTCGGGCGAG
TCACCTTCGGACAACTCCCTCGCATCCCACCAAGCCCGCTTCAAGGAGGC
CACTTCGCAATACTTCGCCCTCCTTTCGTCCATTGACGTTCGACTCCGTC
GTCAGGTGTATGCTCTGGAGGAGGCGTCTATTCTTGCGCCGGAGACAGCG
TCGAGAGCGGAAAATCTACCCGGGGCGAGCAGTGGCGGGGTGGCGGGCGC
ATCGTCGAACCCGCTCGATGTTAGTTGGCTCAACAGTCGGAAGGACACGG
TGGGCAAGGATAAGGAAGCGGAGTTGTGGGCTGCTGCGAGGGAGTTCGTG
GAGCGGATTAGCAATCCGGCGTCTGTGAGCTCGGGAGCGAAGACAGAGAG
CGAGCAGGAGAAGATGGAGGTTGATTAGATGACAGACGTCAAAGACACCC
GCAAACCAGACCAAGTCTTCACATCAGCGGATCGTATCCGGCAATTGAAC
GAAATAGACAAG back to top
Annotated Terms
The following terms have been associated with this mRNA:
Vocabulary: Cellular Component
| Term | Definition |
|---|
| GO:0016592 | mediator complex |
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0003712 | transcription coregulator activity |
Vocabulary: Biological Process
| Term | Definition |
|---|
| GO:0006357 | regulation of transcription by RNA polymerase II |
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following exon feature(s) are a part of this mRNA:
The following five_prime_UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type |
|---|
| KJC3_010243-T1.utr5p1 | KJC3_010243-T1.utr5p1 | Aspergillus niger KJC3 | five_prime_UTR |
Properties
| Property Name | Value |
|---|
| DBxref | InterPro:IPR019404 |
| DBxref | PFAM:PF10280 |
| Product | hypothetical protein |
Analyses
This mRNA is derived from or has results from the following analyses
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| ch7 | supercontig | ch7:2809236..2809983 - |
|
