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Sequences
The following sequences are available for this feature:
mRNA from alignment at ch7:3284550..3285825+ Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >KJC3_010420-T2 ID=KJC3_010420-T2|Name=KJC3_010420-T2|organism=Aspergillus niger KJC3|type=mRNA|length=1276bp|location=Sequence derived from alignment at ch7:3284550..3285825+ (Aspergillus niger KJC3)
GCCGGAAGTGGGATAAGGTCACAGTGCCCCTCCTCCGCCCCGAGGATCAA
ACGTCTCCCTTACAACTCACTATTTCGCATTATTCATTTTCAACTTAACC
CTGCCTCTTACCTGCACGATGGCAGCTAAAGTGCCCAGAAACTTCAGACT
GCTCGAAGAGCTGGAGAAGGGTGAGAAGGGTCTGGGAGCTGGTAAGTGCT
ATTCTACTTATAGTCATAGGAGACTCATTTCGTTGACATATTCCTATCGC
TGTAACTTAGAGTCATGCTCCTATGGTCTTGCAGATGGTGAAGACATGAT
GATGAGTAACTGGAACGGAACTATTCTTGGCCCCCCTCACGTTCGTCCCA
CGCTTCCGACTCGCATCCATTATACTATACAATAGCATCACTGACATTAT
GAACGAGCGCAGAGTGTCCATGAGAACAGAATTTACAGCGTCAACATCCA
TTGCGGTCCGGACTATCCCGACAACCCCCCTACCATCCAATTCGTATCCC
GAGTCAACTTGCCATGCGTTGATGGCCGGAGCGGAAAGGTAAGGATTCGT
TCTATTTCGACTGCTACTATATGGAAGATTCCAAGTCTGACTTCAATCTA
GGTCGATCCTACCAAGCTGCCCTGCTTGGCTCAGTGGAAGCGCGACTATA
CCATGGAAACTATTCTAGTCGAGCTCAGAAGGTAATCATGTCCTGACCTT
CAGGCCATCGGTGACTTGATACTAATAGTTCCTAGATATATGGCTCTGCC
TCAGCACAAGAAGCTTCCCCAGCCTCCGGAAGGCTCGAACTTCTAAATTG
ACGGTATCATGACTGGACGTGGATTCGAAAGCGGAGTATATGGTTGGTTT
CTAAGTCAGGTTCATCTGCATTTCTCTTCAATAGCTTATTAGAGCATGTA
CAGTCTATGCATAACGGCGGGCATGGCGCGGTCTTCTTTGAAGCCTAGTT
GCAATTCATCGAATTAGAACTTTGCTCAGTATGAACCATGTGCCACTTTC
AGCAGAATTCTACCTGCCGAACCAACAAGACCCTGGTTCTTGGCGGATAC
CCGTTGATATTTTTTTGACAGCTTTCAGAAGCGATCATACCGGCGAAAGA
CACTAGATCATGATCAACACAGAGGAATATCCGAGAATCGGATCTCTTCC
TTCGCCTGTTGTAGATCGGATAGCAGTAGCCCATACTAGCTGCACAGCAC
GCACAGCAAGCGTCCGGTGCAATTGGTTCCCTAATAATAGTCTCGGTCGA
GGGCCAAAGTGTTAAAAATTTATGAT back to topCoding sequence (CDS) from alignment at ch7:3284550..3285825+ >KJC3_010420-T2 ID=KJC3_010420-T2|Name=KJC3_010420-T2|organism=Aspergillus niger KJC3|type=CDS|length=1026bp|location=Sequence derived from alignment at ch7:3284550..3285825+ (Aspergillus niger KJC3)
ATGGCAGCTAAAGTGCCCAGAAACTTCAGACTGCTCGAAGAGCTGGAGAA
GGGTGAGAAGGGTCTGGGAGCTGAGTCATGCTCCTATGGTCTTGCAGATG
GTGAAGACATGATGATGAGTAACTGGAACGGAACTATTCTTGGCCCCCCT
CACAGTGTCCATGAGAACAGAATTTACAGCGTCAACATCCATTGCGGTCC
GGACTATCCCGACAACCCCCCTACCATCCAATTCGTATCCCGAGTCAACT
TGCCATGCGTTGATGGCCGGAGCGGAAAGGTAAGGATTCGTTCTATTTCG
ACTGCTACTATATGGAAGATTCCAAGTCTGACTTCAATCTAGATGGCAGC
TAAAGTGCCCAGAAACTTCAGACTGCTCGAAGAGCTGGAGAAGGGTGAGA
AGGGTCTGGGAGCTGAGTCATGCTCCTATGGTCTTGCAGATGGTGAAGAC
ATGATGATGAGTAACTGGAACGGAACTATTCTTGGCCCCCCTCACAGTGT
CCATGAGAACAGAATTTACAGCGTCAACATCCATTGCGGTCCGGACTATC
CCGACAACCCCCCTACCATCCAATTCGTATCCCGAGTCAACTTGCCATGC
GTTGATGGCCGGAGCGGAAAGGTAAGGATTCGTTCTATTTCGACTGCTAC
TATATGGAAGATTCCAAGTCTGACTTCAATCTAGATGGCAGCTAAAGTGC
CCAGAAACTTCAGACTGCTCGAAGAGCTGGAGAAGGGTGAGAAGGGTCTG
GGAGCTGAGTCATGCTCCTATGGTCTTGCAGATGGTGAAGACATGATGAT
GAGTAACTGGAACGGAACTATTCTTGGCCCCCCTCACAGTGTCCATGAGA
ACAGAATTTACAGCGTCAACATCCATTGCGGTCCGGACTATCCCGACAAC
CCCCCTACCATCCAATTCGTATCCCGAGTCAACTTGCCATGCGTTGATGG
CCGGAGCGGAAAGGTAAGGATTCGTTCTATTTCGACTGCTACTATATGGA
AGATTCCAAGTCTGACTTCAATCTAG back to top
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following five_prime_UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type |
|---|
| KJC3_010420-T2.utr5p1 | KJC3_010420-T2.utr5p1 | Aspergillus niger KJC3 | five_prime_UTR |
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following three_prime_UTR feature(s) are a part of this mRNA:
Properties
| Property Name | Value |
|---|
| DBxref | InterPro:IPR000608 |
| DBxref | InterPro:IPR016135 |
| DBxref | PFAM:PF00179 |
| Product | variant 2 |
| Product | E2 ubiquitin-conjugating protein mms2 |
Analyses
This mRNA is derived from or has results from the following analyses
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| ch7 | supercontig | ch7:3284550..3285825 + |
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