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Sequences
The following sequences are available for this feature:
mRNA from alignment at ch7:3843715..3845989+ Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >KJC3_010605-T1 ID=KJC3_010605-T1|Name=KJC3_010605-T1|organism=Aspergillus niger KJC3|type=mRNA|length=2275bp|location=Sequence derived from alignment at ch7:3843715..3845989+ (Aspergillus niger KJC3)
AAATCTCAAACCACCGATTCGCCGACTTCGACTTTGCCTCCAAACATCTC
TGCTCCTGATTTTAAGGCTGCCCGTCAATAACGCCGGTTCGCGCGGGTGA
GTCCGACCTCAATTCCTTGAATGCACCCCTCACTCCAACCACGCATCCTC
CGCTCCGCCCGACGAGCCCTGACGGAGTGTCCCTGGGCCCCAGCGAGCAG
TTGCAGACGCAGCACCAGCACCAGCAGCACCAGCAGCCGTAGCCTTCAGC
AGCACCAAACCAGCGAGCGGCCAAACATCCGGCAGGCGATCGAAGCCCCC
ACCATCCCCCACCACCGCCACTACCACATCTCCCTCTCCCACTCGACTTT
TCCCTCCTCCCCCTCCTCCATTCTCCCTCCCCATCCCTCTCGTCCGCTCT
CCACCATGCCCAAAGAAAAGGAATCCAAGCTCTCCTTCAACCTCAAAACC
CCCAAGGGTACCAAGGACTGGTCCGGCTCCGACGCCCTCCTCCGCGACCG
CATCTTCTCCACCATCGCCGATGTCTTCAAGCGCCATGGCGGTACTGCCC
TCGACACCCCCGTCTTCGAGCTGCGCGAGATTCTCGCCGGTAAGTATGGC
GAGGACTCCAAGCTCATTTACGACCTTCAAGACCAGGGTGGAGAAATCTG
CTCTCTCCGCTACGATCTCACCGTCCCCTTCGCCCGCTGGCTCGCCATGA
ACCCGGATGTCCGCAGCATGAAGCGCTACCACATCGCCAAGGTGTACCGT
CGCGATCAGCCCGCCGTGAGCAAGGGTCGCATGCGCGAGTTCTACCAGTG
CGATTTCGATATCGCCGGTACCTTCGATCCCATGGTCCCCGATGCCGAGA
TCCTGCGCATCGTCACCGAAGTCTTCGAGGAGCTGGGCTGGAACGGCCGC
TATAACATCAAGATCAACCACCGGAAGATTCTGGACGGTGTGTTCCAGGT
CTGCGGTGTGCCCGAGGAGAAGATCCGTCCCATCTCCAGTGCCGTCGACA
AGCTGGACAAGATGCCCTGGGCGGACGTGCGCAAGGAAATGGTCGAGGAG
AAGGGCCTGGACGGCGCCGTGGCTGACAAGATCGAGACATACGTGATGCA
CAAGGGCGGTCGCGAACTCCTTGATAACCTCCTCAAGGATGAGGGCCTGA
CTGCCAACGAGTCTGCCAAGGCCGGTCTGGAAGATATGGGCCTGCTTATG
GATTACCTCGAGGCATTCGGTGTGCTGGACAAGATCTCCTTCGACATGAG
CTTGGCCCGCGGTCTCGATTATTACACCGGTGTGATCTATGAGGTCGTTA
CCGAGGGCTCCGCCCCCGCCGTGGCGTCCTCCGCACCGGAGGCCCAGGCC
GTGCAGAAGTCCGGCAAGAAGAGCAAGTCCAAGGGCGGCAATCTGGAGGA
TGACGACCGCTCCAACGACCCGACCCTGGGTGTCGGCAGTGTCGCCGCAG
GAGGTCGCTATGACAACCTGGTGGGCATGTTCCTGCCCAAGGCGCAGATT
CCCTGTGTGGGTGTGTCCTTCGGTGTGGACCGTATCTTCTCCATCACCAA
GGCCCGTCTCGAGCGGGAGAAGAGCGCTGAAGCCCTCCGCAGCAGCGAGG
TCGATGCCTACGTGATGGCCTTTGGCGGTAAGGGCTTCACGGGTATGTTG
AAGGAGCGGATGAGCGTGTGCCAGACTCTCTGGAACTCTGGCGTCAAGGT
AAGCTCCCCCACCCCCACCTACCATCTTTCCTCCCCTCCTGCTATATACT
AATAATCCATAGGCCGAATTCTCCTACAAAGTCAAGCCCAAGCTCCCCCA
ACAATTCAAGGCCGCCGAACAAGCCGGCGTCCCCTTCGCCGTCATCCTGG
GCGAGGACGAGCTCGCGGCCGGCAAGGTTCGCGTCAAGGAAATGGGTCTG
GAGGACGGACACCCCGAGAAGGAAGGTGTGCTGGTTGATCTGACTGCTCT
GCCGGCGGAGGTCAAGGCCCGGGTGGCTAAGAAGCGAGGAGAGAGTGTCG
ATGGTGTTGCGCAGCAGTTGGGTGAGATGAAGGTTGATGCATAGAGCGGG
AAACCATATACAGGGCTTAGATGGGTTTAACTTGTTTGTGCTAGGAGCGT
TCGACTTGAAAAAAAGTACAAGGGAAGGAAAGAAAGAAAGAAAGCAAAAA
TTTAACGAAGATGTTCTAAAATACAATACCCCGGGGGTTATTTTCTATAT
CTTTCGCTTTCAATGGTTCTCTTGGTATAGTATAGATAGATAGCAGTCAA
ATTGGAGCGACATTGTTCTTTACTA back to topCoding sequence (CDS) from alignment at ch7:3843715..3845989+ >KJC3_010605-T1 ID=KJC3_010605-T1|Name=KJC3_010605-T1|organism=Aspergillus niger KJC3|type=CDS|length=1632bp|location=Sequence derived from alignment at ch7:3843715..3845989+ (Aspergillus niger KJC3)
ATGCACCCCTCACTCCAACCACGCATCCTCCGCTCCGCCCGACGAGCCCT
GACGGAGTGTCCCTGGGCCCCAGCGAGCAGTTGCAGACGCAGCACCAGCA
CCAGCAGCACCAGCAGCCGTAGCCTTCAGCAGCACCAAACCAGCGAGCGG
CCAAACATCCGGCAGGCGATCGAAGCCCCCACCATCCCCCACCACCGCCA
CTACCACATCTCCCTCTCCCACTCGACTTTTCCCTCCTCCCCCTCCTCCA
TTCTCCCTCCCCATCCCTCTCGTCCGCTCTCCACCATGCCCAAAGAAAAG
GAATCCAAGCTCTCCTTCAACCTCAAAACCCCCAAGGGTACCAAGGACTG
GTCCGGCTCCGACGCCCTCCTCCGCGACCGCATCTTCTCCACCATCGCCG
ATGTCTTCAAGCGCCATGGCGGTACTGCCCTCGACACCCCCGTCTTCGAG
CTGCGCGAGATTCTCGCCGGTAAGTATGGCGAGGACTCCAAGCTCATTTA
CGACCTTCAAGACCAGGGTGGAGAAATCTGCTCTCTCCGCTACGATCTCA
CCGTCCCCTTCGCCCGCTGGCTCGCCATGAACCCGGATGTCCGCAGCATG
AAGCGCTACCACATCGCCAAGGTGTACCGTCGCGATCAGCCCGCCGTGAG
CAAGGGTCGCATGCGCGAGTTCTACCAGTGCGATTTCGATATCGCCGGTA
CCTTCGATCCCATGGTCCCCGATGCCGAGATCCTGCGCATCGTCACCGAA
GTCTTCGAGGAGCTGGGCTGGAACGGCCGCTATAACATCAAGATCAACCA
CCGGAAGATTCTGGACGGTGTGTTCCAGGTCTGCGGTGTGCCCGAGGAGA
AGATCCGTCCCATCTCCAGTGCCGTCGACAAGCTGGACAAGATGCCCTGG
GCGGACGTGCGCAAGGAAATGGTCGAGGAGAAGGGCCTGGACGGCGCCGT
GGCTGACAAGATCGAGACATACGTGATGCACAAGGGCGGTCGCGAACTCC
TTGATAACCTCCTCAAGGATGAGGGCCTGACTGCCAACGAGTCTGCCAAG
GCCGGTCTGGAAGATATGGGCCTGCTTATGGATTACCTCGAGGCATTCGG
TGTGCTGGACAAGATCTCCTTCGACATGAGCTTGGCCCGCGGTCTCGATT
ATTACACCGGTGTGATCTATGAGGTCGTTACCGAGGGCTCCGCCCCCGCC
GTGGCGTCCTCCGCACCGGAGGCCCAGGCCGTGCAGAAGTCCGGCAAGAA
GAGCAAGTCCAAGGGCGGCAATCTGGAGGATGACGACCGCTCCAACGACC
CGACCCTGGGTGTCGGCAGTGTCGCCGCAGGAGGTCGCTATGACAACCTG
GTGGGCATGTTCCTGCCCAAGGCGCAGATTCCCTGTGTGGGTGTGTCCTT
CGGTGTGGACCGTATCTTCTCCATCACCAAGGCCCGTCTCGAGCGGGAGA
AGAGCGCTGAAGCCCTCCGCAGCAGCGAGGTCGATGCCTACGTGATGGCC
TTTGGCGGTAAGGGCTTCACGGGTATGTTGAAGGAGCGGATGAGCGTGTG
CCAGACTCTCTGGAACTCTGGCGTCAAGGTAAGCTCCCCCACCCCCACCT
ACCATCTTTCCTCCCCTCCTGCTATATACTAA back to top
Relationships
This mRNA is a part of the following gene feature(s):
The following five_prime_UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type |
|---|
| KJC3_010605-T1.utr5p1 | KJC3_010605-T1.utr5p1 | Aspergillus niger KJC3 | five_prime_UTR |
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following three_prime_UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type |
|---|
| KJC3_010605-T1.utr3p1 | KJC3_010605-T1.utr3p1 | Aspergillus niger KJC3 | three_prime_UTR |
The following polypeptide feature(s) derives from this mRNA:
Properties
| Property Name | Value |
|---|
| DBxref | InterPro:IPR006195 |
| DBxref | InterPro:IPR041715 |
| DBxref | PFAM:PF13393 |
| Product | Cytoplasmic and mitochondrial histidine tRNA synthetase |
Analyses
This mRNA is derived from or has results from the following analyses
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| ch7 | supercontig | ch7:3843715..3845989 + |
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