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Sequences
The following sequences are available for this feature:
mRNA from alignment at ch7:5243096..5245591- Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >KJC3_011106-T1 ID=KJC3_011106-T1|Name=KJC3_011106-T1|organism=Aspergillus niger KJC3|type=mRNA|length=2496bp|location=Sequence derived from alignment at ch7:5243096..5245591- (Aspergillus niger KJC3)
CAGTATCTTCACATCTTCACCTCACTCCTCAGCTACAACACAGTTCTTGT
AGGGAATCTGCTCATTCCGACTTCTATTTATACGACACCGAAACGTTCTA
TATTACAGAGTTAGAAACAACTTGGGGGTTTCCGGATTTGAAACAGAAGG
GTTCGCTCAAGTCAAGCTTGATACGCCGGCACTCTCTAACCAAGCCAAAA
GTGACCTCAATCCTATCCGCGCAATCTTCGTTGCATTTGTTTTCTGTTCA
GTTTAGTCCAGGAAAAAGACAAATTGCAGCTATACCAAAATGTCAGGTCT
CGATGTTGAGGCTCTCCTTGAGTCCACAGCTGCTCCGCCATCTCAAGACC
CTCCCCGTTCCCAGGACCGCGATGACCGCTCCTCCAAAACTGACAGTAAC
GAACGCCGGGACCGTGATCGGTCACGAGAGAAGGACCGCAAGCGCAGGGA
CCGCAGCCGTGATCGACGTCGCTCGCGAGATATCGATGGAGATGAAGACA
TGAAGAGCCCGAGAAGCGAACATGGCAGTGCTAACGGAAGCCATAGAAGC
AGAAAGAGGAGCAGGAGTCGTGATAGCGAACGCCGTCGGTCTCGTCGTGA
CCGTTACGGTGACGAATACCGTTCTGGTGGCGACTTCTACCGCGGTGGTG
GACGGGCTCGCACTCGCTCTCGGTCGCCTTACGATGATCGCTATTACCGC
CCCTCGGGCCGCTCCCGTCGCGATGAGCGAGATGAAGATAGACGCACTCG
CCGTGACCGCAAACGAAGCCCGAGCCCGAGAAGCCGCGAGAGGACCCCGG
AGCCTACTGAGGATGAGCGTGACAGGCGTACCATTTTCGTTCAGCAGCTT
GCTGCGCGGTTGAGAACTAAGGAGCTGATTGCGTTCTTTGAGAAAGTCGG
ACCTGTCAAGGAAGCCCAGATCGTTAAGGACCGTGTCAGTGGACGGTCTA
AAGGGTGAGTTCCCTGCGTTTCCATATGACAGGAGAGCTGTGTACTAACT
TTCACTAGTGTCGGTTATGTCGAGTTCAAAAGCGAAGACTCCGTTGCGCC
CGCTATCCAGCTTACCGGACAGAAACTTCTAGGAATTCCCATAATCGCCC
AACTGACTGAAGCGGAAAAGAACCGCCAGGCCCGCAATCCCGAGGCCAGC
AGCGGCAACAATCACGCTGCTCCATTTCACAGGTTGTACGTGGGTAACAT
TCATTTCAGCATCACTGAAAGTGACCTTCAGAACGTCTTTGAGCCTTTTG
GCGAACTCGAATTTGTCCAGCTGCAGAAGGATGAGACTGGTCGTAGCAGG
GGTTATGGATTCGTGCAGTGAGTGTTACCCCTATACATTTTCCCTTCATG
ATTAGTAACTGTTGCTAATACCGTGTATAGGTTCCGTGATCCAAACCAGG
CTCGTGAGGCTTTGGAAAAGATGAATGGATTTGACCTTGCTGGTCGAGCA
ATCCGCGTTGGCCTTGGCAACGATAAGTTCACTCCTGACTCGAACGCACA
ACGCATGCAGAGCCAAGGTGCAAACCAACATAACTTCCAGGGCTCTCTCT
TCTCGGGTCACGGAGGACGTGGTGTTCAAGCCGGCGGTACCAGCAACTTC
GACCGCGCTGGTGGCCGTGACTCCGAAAAGGGGGCCGGCGCTAGTGCATT
GGACGATACGGATGTTGCCGGCGTAAATTTCAACAACTACAGTAGGGATG
CATTGATGCGCAAGCTTGCAAGAACAGATGAACCATCCGAGCCTGCTGCC
GATGACCAGCAGAAGGTGCTCCGTCCCAAGACTGAGGCTAAGCCTCTGCC
TGTTAACGTCAACATGGCAAGTCGGTGTGTCATGCTCCGCAACATGTTTG
ACCCCAACGAGTAAGTTGCTCAATCATAGCTATCTGTCTTCTCTATACAG
AATCTAACAATATCGCAGGGAGGAGGGTGAAGCTTGGATTAAGGAGCTGG
AGGATGACGTTCGCGCTGAGTGCGAAGACAAATATGGCCATGTTGTTCAC
ATTGCACTAGATCCCAACTCGCAAGGCGATATTTACCTGAAGTTCGACCG
CGTCCAGGGTGGCGAGAACGCCATCAAGGGCCTGAACGGGCGTTTCTTTG
GTGGTCGACAGATCACCGCCCAGCCCGTCGTCGACGCTGTCTACAGCAGT
CTGTTCTCCCGAACCAAAGCGATCTAAAGTATATGACATCGGCCCGCGCC
TACCATGACCACATATGGGTAGGTATTTCATCTAATTTATCTCTCTTACC
AGGTGCAATCTGTGACGGCCGGACCACACTTTGGCCTTTGAACTGTTGAG
CGGTTGCTTCGGCATGGTGCTTGGCTTGGATGACACTGCCCCTGGTAGGT
GCCAGTCTTCTCGACATCTCACCCTTTATGGTTGTCTATCAGGCCGAGAG
CCTCGTGGAATGATCTTGTCTATAGGGATTTGTACATTGCGTTAGCGCCA
AATAGTCCATTTTTCGTAACCTTGTTAATTGACAATTTGCCAGTCA back to topCoding sequence (CDS) from alignment at ch7:5243096..5245591- >KJC3_011106-T1 ID=KJC3_011106-T1|Name=KJC3_011106-T1|organism=Aspergillus niger KJC3|type=CDS|length=6852bp|location=Sequence derived from alignment at ch7:5243096..5245591- (Aspergillus niger KJC3)
GGAGGAGGGTGAAGCTTGGATTAAGGAGCTGGAGGATGACGTTCGCGCTG
AGTGCGAAGACAAATATGGCCATGTTGTTCACATTGCACTAGATCCCAAC
TCGCAAGGCGATATTTACCTGAAGTTCGACCGCGTCCAGGGTGGCGAGAA
CGCCATCAAGGGCCTGAACGGGCGTTTCTTTGGTGGTCGACAGATCACCG
CCCAGCCCGTCGTCGACGCTGTCTACAGCAGTCTGTTCTCCCGAACCAAA
GCGATCTAAGTTCCGTGATCCAAACCAGGCTCGTGAGGCTTTGGAAAAGA
TGAATGGATTTGACCTTGCTGGTCGAGCAATCCGCGTTGGCCTTGGCAAC
GATAAGTTCACTCCTGACTCGAACGCACAACGCATGCAGAGCCAAGGTGC
AAACCAACATAACTTCCAGGGCTCTCTCTTCTCGGGTCACGGAGGACGTG
GTGTTCAAGCCGGCGGTACCAGCAACTTCGACCGCGCTGGTGGCCGTGAC
TCCGAAAAGGGGGCCGGCGCTAGTGCATTGGACGATACGGATGTTGCCGG
CGTAAATTTCAACAACTACAGTAGGGATGCATTGATGCGCAAGCTTGCAA
GAACAGATGAACCATCCGAGCCTGCTGCCGATGACCAGCAGAAGGTGCTC
CGTCCCAAGACTGAGGCTAAGCCTCTGCCTGTTAACGTCAACATGGCAAG
TCGGTGTGTCATGCTCCGCAACATGTTTGACCCCAACGATGTCGGTTATG
TCGAGTTCAAAAGCGAAGACTCCGTTGCGCCCGCTATCCAGCTTACCGGA
CAGAAACTTCTAGGAATTCCCATAATCGCCCAACTGACTGAAGCGGAAAA
GAACCGCCAGGCCCGCAATCCCGAGGCCAGCAGCGGCAACAATCACGCTG
CTCCATTTCACAGGTTGTACGTGGGTAACATTCATTTCAGCATCACTGAA
AGTGACCTTCAGAACGTCTTTGAGCCTTTTGGCGAACTCGAATTTGTCCA
GCTGCAGAAGGATGAGACTGGTCGTAGCAGGGGTTATGGATTCGTGCAAT
GTCAGGTCTCGATGTTGAGGCTCTCCTTGAGTCCACAGCTGCTCCGCCAT
CTCAAGACCCTCCCCGTTCCCAGGACCGCGATGACCGCTCCTCCAAAACT
GACAGTAACGAACGCCGGGACCGTGATCGGTCACGAGAGAAGGACCGCAA
GCGCAGGGACCGCAGCCGTGATCGACGTCGCTCGCGAGATATCGATGGAG
ATGAAGACATGAAGAGCCCGAGAAGCGAACATGGCAGTGCTAACGGAAGC
CATAGAAGCAGAAAGAGGAGCAGGAGTCGTGATAGCGAACGCCGTCGGTC
TCGTCGTGACCGTTACGGTGACGAATACCGTTCTGGTGGCGACTTCTACC
GCGGTGGTGGACGGGCTCGCACTCGCTCTCGGTCGCCTTACGATGATCGC
TATTACCGCCCCTCGGGCCGCTCCCGTCGCGATGAGCGAGATGAAGATAG
ACGCACTCGCCGTGACCGCAAACGAAGCCCGAGCCCGAGAAGCCGCGAGA
GGACCCCGGAGCCTACTGAGGATGAGCGTGACAGGCGTACCATTTTCGTT
CAGCAGCTTGCTGCGCGGTTGAGAACTAAGGAGCTGATTGCGTTCTTTGA
GAAAGTCGGACCTGTCAAGGAAGCCCAGATCGTTAAGGACCGTGTCAGTG
GACGGTCTAAAGGGGAGGAGGGTGAAGCTTGGATTAAGGAGCTGGAGGAT
GACGTTCGCGCTGAGTGCGAAGACAAATATGGCCATGTTGTTCACATTGC
ACTAGATCCCAACTCGCAAGGCGATATTTACCTGAAGTTCGACCGCGTCC
AGGGTGGCGAGAACGCCATCAAGGGCCTGAACGGGCGTTTCTTTGGTGGT
CGACAGATCACCGCCCAGCCCGTCGTCGACGCTGTCTACAGCAGTCTGTT
CTCCCGAACCAAAGCGATCTAAGTTCCGTGATCCAAACCAGGCTCGTGAG
GCTTTGGAAAAGATGAATGGATTTGACCTTGCTGGTCGAGCAATCCGCGT
TGGCCTTGGCAACGATAAGTTCACTCCTGACTCGAACGCACAACGCATGC
AGAGCCAAGGTGCAAACCAACATAACTTCCAGGGCTCTCTCTTCTCGGGT
CACGGAGGACGTGGTGTTCAAGCCGGCGGTACCAGCAACTTCGACCGCGC
TGGTGGCCGTGACTCCGAAAAGGGGGCCGGCGCTAGTGCATTGGACGATA
CGGATGTTGCCGGCGTAAATTTCAACAACTACAGTAGGGATGCATTGATG
CGCAAGCTTGCAAGAACAGATGAACCATCCGAGCCTGCTGCCGATGACCA
GCAGAAGGTGCTCCGTCCCAAGACTGAGGCTAAGCCTCTGCCTGTTAACG
TCAACATGGCAAGTCGGTGTGTCATGCTCCGCAACATGTTTGACCCCAAC
GATGTCGGTTATGTCGAGTTCAAAAGCGAAGACTCCGTTGCGCCCGCTAT
CCAGCTTACCGGACAGAAACTTCTAGGAATTCCCATAATCGCCCAACTGA
CTGAAGCGGAAAAGAACCGCCAGGCCCGCAATCCCGAGGCCAGCAGCGGC
AACAATCACGCTGCTCCATTTCACAGGTTGTACGTGGGTAACATTCATTT
CAGCATCACTGAAAGTGACCTTCAGAACGTCTTTGAGCCTTTTGGCGAAC
TCGAATTTGTCCAGCTGCAGAAGGATGAGACTGGTCGTAGCAGGGGTTAT
GGATTCGTGCAATGTCAGGTCTCGATGTTGAGGCTCTCCTTGAGTCCACA
GCTGCTCCGCCATCTCAAGACCCTCCCCGTTCCCAGGACCGCGATGACCG
CTCCTCCAAAACTGACAGTAACGAACGCCGGGACCGTGATCGGTCACGAG
AGAAGGACCGCAAGCGCAGGGACCGCAGCCGTGATCGACGTCGCTCGCGA
GATATCGATGGAGATGAAGACATGAAGAGCCCGAGAAGCGAACATGGCAG
TGCTAACGGAAGCCATAGAAGCAGAAAGAGGAGCAGGAGTCGTGATAGCG
AACGCCGTCGGTCTCGTCGTGACCGTTACGGTGACGAATACCGTTCTGGT
GGCGACTTCTACCGCGGTGGTGGACGGGCTCGCACTCGCTCTCGGTCGCC
TTACGATGATCGCTATTACCGCCCCTCGGGCCGCTCCCGTCGCGATGAGC
GAGATGAAGATAGACGCACTCGCCGTGACCGCAAACGAAGCCCGAGCCCG
AGAAGCCGCGAGAGGACCCCGGAGCCTACTGAGGATGAGCGTGACAGGCG
TACCATTTTCGTTCAGCAGCTTGCTGCGCGGTTGAGAACTAAGGAGCTGA
TTGCGTTCTTTGAGAAAGTCGGACCTGTCAAGGAAGCCCAGATCGTTAAG
GACCGTGTCAGTGGACGGTCTAAAGGGGAGGAGGGTGAAGCTTGGATTAA
GGAGCTGGAGGATGACGTTCGCGCTGAGTGCGAAGACAAATATGGCCATG
TTGTTCACATTGCACTAGATCCCAACTCGCAAGGCGATATTTACCTGAAG
TTCGACCGCGTCCAGGGTGGCGAGAACGCCATCAAGGGCCTGAACGGGCG
TTTCTTTGGTGGTCGACAGATCACCGCCCAGCCCGTCGTCGACGCTGTCT
ACAGCAGTCTGTTCTCCCGAACCAAAGCGATCTAAGTTCCGTGATCCAAA
CCAGGCTCGTGAGGCTTTGGAAAAGATGAATGGATTTGACCTTGCTGGTC
GAGCAATCCGCGTTGGCCTTGGCAACGATAAGTTCACTCCTGACTCGAAC
GCACAACGCATGCAGAGCCAAGGTGCAAACCAACATAACTTCCAGGGCTC
TCTCTTCTCGGGTCACGGAGGACGTGGTGTTCAAGCCGGCGGTACCAGCA
ACTTCGACCGCGCTGGTGGCCGTGACTCCGAAAAGGGGGCCGGCGCTAGT
GCATTGGACGATACGGATGTTGCCGGCGTAAATTTCAACAACTACAGTAG
GGATGCATTGATGCGCAAGCTTGCAAGAACAGATGAACCATCCGAGCCTG
CTGCCGATGACCAGCAGAAGGTGCTCCGTCCCAAGACTGAGGCTAAGCCT
CTGCCTGTTAACGTCAACATGGCAAGTCGGTGTGTCATGCTCCGCAACAT
GTTTGACCCCAACGATGTCGGTTATGTCGAGTTCAAAAGCGAAGACTCCG
TTGCGCCCGCTATCCAGCTTACCGGACAGAAACTTCTAGGAATTCCCATA
ATCGCCCAACTGACTGAAGCGGAAAAGAACCGCCAGGCCCGCAATCCCGA
GGCCAGCAGCGGCAACAATCACGCTGCTCCATTTCACAGGTTGTACGTGG
GTAACATTCATTTCAGCATCACTGAAAGTGACCTTCAGAACGTCTTTGAG
CCTTTTGGCGAACTCGAATTTGTCCAGCTGCAGAAGGATGAGACTGGTCG
TAGCAGGGGTTATGGATTCGTGCAATGTCAGGTCTCGATGTTGAGGCTCT
CCTTGAGTCCACAGCTGCTCCGCCATCTCAAGACCCTCCCCGTTCCCAGG
ACCGCGATGACCGCTCCTCCAAAACTGACAGTAACGAACGCCGGGACCGT
GATCGGTCACGAGAGAAGGACCGCAAGCGCAGGGACCGCAGCCGTGATCG
ACGTCGCTCGCGAGATATCGATGGAGATGAAGACATGAAGAGCCCGAGAA
GCGAACATGGCAGTGCTAACGGAAGCCATAGAAGCAGAAAGAGGAGCAGG
AGTCGTGATAGCGAACGCCGTCGGTCTCGTCGTGACCGTTACGGTGACGA
ATACCGTTCTGGTGGCGACTTCTACCGCGGTGGTGGACGGGCTCGCACTC
GCTCTCGGTCGCCTTACGATGATCGCTATTACCGCCCCTCGGGCCGCTCC
CGTCGCGATGAGCGAGATGAAGATAGACGCACTCGCCGTGACCGCAAACG
AAGCCCGAGCCCGAGAAGCCGCGAGAGGACCCCGGAGCCTACTGAGGATG
AGCGTGACAGGCGTACCATTTTCGTTCAGCAGCTTGCTGCGCGGTTGAGA
ACTAAGGAGCTGATTGCGTTCTTTGAGAAAGTCGGACCTGTCAAGGAAGC
CCAGATCGTTAAGGACCGTGTCAGTGGACGGTCTAAAGGGGAGGAGGGTG
AAGCTTGGATTAAGGAGCTGGAGGATGACGTTCGCGCTGAGTGCGAAGAC
AAATATGGCCATGTTGTTCACATTGCACTAGATCCCAACTCGCAAGGCGA
TATTTACCTGAAGTTCGACCGCGTCCAGGGTGGCGAGAACGCCATCAAGG
GCCTGAACGGGCGTTTCTTTGGTGGTCGACAGATCACCGCCCAGCCCGTC
GTCGACGCTGTCTACAGCAGTCTGTTCTCCCGAACCAAAGCGATCTAAGT
TCCGTGATCCAAACCAGGCTCGTGAGGCTTTGGAAAAGATGAATGGATTT
GACCTTGCTGGTCGAGCAATCCGCGTTGGCCTTGGCAACGATAAGTTCAC
TCCTGACTCGAACGCACAACGCATGCAGAGCCAAGGTGCAAACCAACATA
ACTTCCAGGGCTCTCTCTTCTCGGGTCACGGAGGACGTGGTGTTCAAGCC
GGCGGTACCAGCAACTTCGACCGCGCTGGTGGCCGTGACTCCGAAAAGGG
GGCCGGCGCTAGTGCATTGGACGATACGGATGTTGCCGGCGTAAATTTCA
ACAACTACAGTAGGGATGCATTGATGCGCAAGCTTGCAAGAACAGATGAA
CCATCCGAGCCTGCTGCCGATGACCAGCAGAAGGTGCTCCGTCCCAAGAC
TGAGGCTAAGCCTCTGCCTGTTAACGTCAACATGGCAAGTCGGTGTGTCA
TGCTCCGCAACATGTTTGACCCCAACGATGTCGGTTATGTCGAGTTCAAA
AGCGAAGACTCCGTTGCGCCCGCTATCCAGCTTACCGGACAGAAACTTCT
AGGAATTCCCATAATCGCCCAACTGACTGAAGCGGAAAAGAACCGCCAGG
CCCGCAATCCCGAGGCCAGCAGCGGCAACAATCACGCTGCTCCATTTCAC
AGGTTGTACGTGGGTAACATTCATTTCAGCATCACTGAAAGTGACCTTCA
GAACGTCTTTGAGCCTTTTGGCGAACTCGAATTTGTCCAGCTGCAGAAGG
ATGAGACTGGTCGTAGCAGGGGTTATGGATTCGTGCAATGTCAGGTCTCG
ATGTTGAGGCTCTCCTTGAGTCCACAGCTGCTCCGCCATCTCAAGACCCT
CCCCGTTCCCAGGACCGCGATGACCGCTCCTCCAAAACTGACAGTAACGA
ACGCCGGGACCGTGATCGGTCACGAGAGAAGGACCGCAAGCGCAGGGACC
GCAGCCGTGATCGACGTCGCTCGCGAGATATCGATGGAGATGAAGACATG
AAGAGCCCGAGAAGCGAACATGGCAGTGCTAACGGAAGCCATAGAAGCAG
AAAGAGGAGCAGGAGTCGTGATAGCGAACGCCGTCGGTCTCGTCGTGACC
GTTACGGTGACGAATACCGTTCTGGTGGCGACTTCTACCGCGGTGGTGGA
CGGGCTCGCACTCGCTCTCGGTCGCCTTACGATGATCGCTATTACCGCCC
CTCGGGCCGCTCCCGTCGCGATGAGCGAGATGAAGATAGACGCACTCGCC
GTGACCGCAAACGAAGCCCGAGCCCGAGAAGCCGCGAGAGGACCCCGGAG
CCTACTGAGGATGAGCGTGACAGGCGTACCATTTTCGTTCAGCAGCTTGC
TGCGCGGTTGAGAACTAAGGAGCTGATTGCGTTCTTTGAGAAAGTCGGAC
CTGTCAAGGAAGCCCAGATCGTTAAGGACCGTGTCAGTGGACGGTCTAAA
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Annotated Terms
The following terms have been associated with this mRNA:
Vocabulary: Cellular Component
| Term | Definition |
|---|
| GO:0005634 | nucleus |
Vocabulary: Biological Process
| Term | Definition |
|---|
| GO:0006397 | mRNA processing |
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0003723 | RNA binding |
| GO:0003676 | nucleic acid binding |
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following three_prime_UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type |
|---|
| KJC3_011106-T1.utr3p1 | KJC3_011106-T1.utr3p1 | Aspergillus niger KJC3 | three_prime_UTR |
The following exon feature(s) are a part of this mRNA:
The following five_prime_UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type |
|---|
| KJC3_011106-T1.utr5p1 | KJC3_011106-T1.utr5p1 | Aspergillus niger KJC3 | five_prime_UTR |
Properties
| Property Name | Value |
|---|
| DBxref | InterPro:IPR035979 |
| DBxref | InterPro:IPR006509 |
| DBxref | InterPro:IPR029123 |
| DBxref | InterPro:IPR012677 |
| DBxref | InterPro:IPR000504 |
| DBxref | PFAM:PF00076 |
| DBxref | PFAM:PF15519 |
| Product | hypothetical protein |
Analyses
This mRNA is derived from or has results from the following analyses
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| ch7 | supercontig | ch7:5243096..5245591 - |
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