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Sequences
The following sequences are available for this feature:
mRNA from alignment at ch7:5410831..5415910- Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >KJC3_011170-T1 ID=KJC3_011170-T1|Name=KJC3_011170-T1|organism=Aspergillus niger KJC3|type=mRNA|length=5080bp|location=Sequence derived from alignment at ch7:5410831..5415910- (Aspergillus niger KJC3)
TCTAAAGCGATAGCTATTCCTACACACTGTTCGGCTTGCATTGCTTGGGA
TGAGTCAGCACCGAGTCAGCTGAGGGCGCTGAGGGCGGAAATTGCCGGCG
GATAAAGAAAACAAGCGGCGGATTTATTCTGAGACCGGATTTCCTCTCAG
TCACAGTCAGTCCACCTATGGGATCCTACGAGCAAGCAGACGAGCTGTAG
CAACCGACTGTCCGATTGAAAGGGCAGATGCGCGGGTTTCGGGGCGACTC
CCTACTTACATCCGCCTGCTGAGCTGCGTGCGGAACTTCGCAACAGCAAG
CGGAAAATGACGGCCAGCGAGGAAGCCTCCTCCCCCGCCACGCGCGCGCG
AAAGATCCGAAAGGTGACCCGCGCCTGCGATGCTTGCAAGGCCAAAAAGA
AGGCTTGTACGGGCAACATCCCCTGTGGTCCCTGCTCCCGCCGTCACTTG
GCATGCACCTACGACTCCGCCTACAATCGAGGTGTGGCGCTCAGCCCTCC
TCCCTCAACATTGCGTCCCAAGAACCATCGTCCACTGCGGGAGCCCGACA
GGTCATGTAGCAATCCAGATCCGGCCTCAGATGTGATCCAGCCACTGCAG
TCGCCCCCTGCACTTCGTTCAGCCATCGAGTATGTACGGCCAGGCTTGCA
GATCAGCCCTGCATCGGGGCCAGGCATACTCCCCGAGTCTGCTATTGTCG
ATGCATCTGTTCGACGAGGCTCAGTAGACGGGACAGGTCAGTACTGGGGT
CCAAGCTCAGCACATTCATTTCTGGGCAGGGTAGTGGAGGACTTGCATGC
CACTCCCTCCAAATCCATTGCTCCTGCACCAGAGCCCGATGCCTCAGCAA
CGGTCTCCATCTTTTCCCACGGTGATCGTGTGGTCCCGGAGGTTCGGCTA
TCAGATTTTGTCTGGCCAGACCAAACCAAGGCCAAAAGTCTGATCCGCCG
ATATTTCGAGTTTGCAGCACCGACCTACCGCGTGCTCCATCAGCCTACGC
TCCATGCCATGGTACAACGCCTGTACCAGGAGGGCTCGGAGGGCTATCGG
ATCGGTAGCCAGCTCGATGTAGCATCCCAGGCCGTCGTGCTCTTGCTTCT
GAGTACTGCAGCCATGTTCCGAGTCGACGAAGACGGGCGCATGAGAGACG
CCGACGACGATGGCTGGCGCAAGAGCGAGCTTTACTACGCACAAGCGGAG
CATCTGCTGTCGCTCGAGACGGGTGCCCCTACTCTGGCATCGGTGCAAGC
TCGTTTCCTGATGGTGCTGTATCTGCTGAGCTCCTCTCGAGCCCAGAAGG
CGTGGTTCGTGTTTGGCACAACAGTCCAGCTGATGATGGCCCTTGGTTTG
CACAATCGACGGGCGAGGAGGCTCCATGAAGAAGAAGAGGATCTGGTGCA
GCAGGAGTGTCAACGGCGCCTTGTCTGGTGCTCTTACACCCTGGACAAGT
ATCTCAGCGTGATCCTTGGTCGACCACGATTGTGGCATGACGAAGACTTG
GATGAAGATCTTCCCACACGCGTCAATGACGAGGACCTGACGATGCGGGA
AAGGCGATTGACCAGACGTGATTGTGTGATGGACGCGCCGGTCTTTCATG
CGGTATTGGCACAAATTCTCACCCAGGCAGCCAAAAAACCCTACGTTCTC
GCGGGTCTCTCCGATCAGATGGAGATTGAGACCATCCGAGGCCTGTGTGG
TGAGGTCGCGAAATGGCAAGCGGAACTGCCTCCTTTTCTTTCGGGGGTCA
TCCAGCCCAGTAGTTTGGTTCCGGTGTTTCGGCGCCAGCTGACTGTTTTG
CAGCTGGCTCGTTATCATGCCTTGATGTTCATCACGCGACCTCTCTTATT
GCGGGATTATGGGCAAATGTGGCCTGAGCACCGAAGCAGTTACCGATACC
ACCTGCATCTGTGTCTCACCGCAGCGCGAGAAGCAATCGAATCGATCCTT
GGATTTGTGCGCGAGGATGAATTGTTTCCAGCATTTTGGTACTCACAGTA
CATCGCATTCAATGCTTTGTCCATCATCTATCTATACCTGATCCAGGTCA
GACGCAACCGTCTGCCATCTGCGAGTCTCGACTTCGTCGCGAGCCCGGAA
TACGCCTTGCACACGGATTTGGACGAATCCATGTTGTATAGACTGTCTGA
GACGGCAGTGACACACCTCGCCGACGCAACAGCTCGCAACGCTCCTTCTT
GGAAATACAGTGTCATTTTGCAGGGTCTGCGACACGAGCTGGCCCGCCTT
GGGCCCCCAATATTGGAAAATGACGACGCTCACGCTACAGAACCGATTGC
GTTATCCCGTCCAGTTCCCGAATCGATTCCTCGTCCGACCGAACATGGAG
GTGAGACGGGTCGCCATGAACAGCAGGCAGGGCCCGCCGCAGTCGGAGAT
TATAACCTTGATCCGAACGGGCTGCCGCCCATATTCGCGGGGCTGGACCC
CGCTGTTGATCCAGGGTTGCTCGATCCGAGGACCCAGTCCCTCTTGGACA
CTTTCGTTATGGGCGAAAACGTGGTGCTTGACTTCTGGCCACAATTGGAA
AGTCTACCTATCAGTAAGTCTTATCATGCCGGCGTCGATGAAGGCCATCA
ATAAGTGCTAATTGACCCAGCATATCCCGGTTGATATTGGATGTGATACA
GGAGCCGAAGTGCGACTGGGCTCCGACACCGTCAACTACGGGACTTGTGT
ACACCTATCATAAGAATGTCCGGTTGCATCGTTGTACAAGGAAGCCGGAC
AGCATATCTATGCAAGAGCTACAAGAGGACCGCTTCACACAGTAAAAATG
TTGGGTCTTGAAAGTTGGTATGTTGCCCTTTGATTACACCCTGACATTTG
TCACATTCTCAACTGCCAATTACCAGATATATTTGTAACGGATCTGACCG
TCCTCGTCCTCCGCTCTTTGTGCCTTCACGTTGAGCGTATGGAGATATAA
TGCCAACAGCCCCGTCAAGACAATACCGGCTGCAGCAAACGCCGAAAGGG
TGATTCCACCGGGCCGGTACTGCGGCGAGTCGGATGTGGGAAAGAAATAC
GAGCCGTATATATTAGAGGAGTTACCGAACAGGTTGACCAATGCGTACAC
AATGGCCCGCTTGGTGCGCGTCCGGGGTATCGTACTGGCGATCCAGGCTT
GAACGACGTTGAATGCAGAATATGAGCCAGCGCACATCAAGAACATTCCG
ATGTATCTGACCGCAGTGGCTCGTGACGAGATTACCATGACGTTACCCAC
GATGTCCACAATTAGAGGCCACGCGATAAGAACTGCGCGCTGGCTCGTTC
GATTCGCAATGAAGGAGTTGCCTAGAGCAGTGATGAAGCCGAAGACGTAG
ACTGGCGCCGTGATCAACAGTGTGATGATGTTGCTGAATCCCAATGTTTT
GACAATGGTCTAATGACACATTAGTATTAGAACGGGGATAGTGACAAACA
TGTTGTTTAATGCTCACAGGGAAGAAATAAGTCCAGCTTTGAGAGGTGAG
CTGGCAGACTTGGATCAGGATCAACATCCATGCCTTGGGATCTAGGAAGG
CATCACGCAAGCCCTCACGGATGGATCCATTCTCATCGACCTCATCATTT
GCGGCGCGGGCGAGACGCCATTCGGCAAAGCGCTGCTCCTGTTCCGATAG
CCACTTCCGCTGCCCGGAGCGAGGAAAGTCGGGGAGAAGCGCGACGGCGA
GCAGGCCGGCCACCATTGTGCCAGCCCCTTCAATGATAAATAGCCATCTG
TCCGCGCAACGTTTAGCTATACGCGGTCACACTAGGCCGGGAAATCACGA
ACCTCCAGCCTTCCAACCCGCCCTTGCCGTTCAATCCACTCATAACGCCT
GCGGCAAACATGCTGCCAAACCCGTTGGCAATGGTGTTTCCACAGTACAC
GACGGCTACTCGCACCGCAATTTCGGACGGTTTGTACCATGAGCTTATCA
GTAACCTGGTGGTACCACTCGTCAGAGTATGTTCAGAGATAAGGTCATTT
GCTTTTCGTAAACTGTACTTACAAAGCCCCCGGGAAGAATGGTGACTCGG
CGAACCCGAGGAATATACGCACACACATAATGCCAGCAAAATTATGTGCT
GCAGCCATGCAGATTGAAATTCCTCCCCAGATAAAGATTGCTGCTGGGAT
GTAGCGGGAGGGTTTCAGACGTGTCAACAGAATGTTACTTGGCACCTGGC
CTAGCAGGTAGCCGACAAACTTTGCATCGATCAAGATCAGCATTGTTTCA
CATCTAAAGATTTGTCTTTTGACATACCATAATGGCTACCGCAGTTTGAT
ACTGCGTGTCCGAAAGGCCTAGGTCTTCCTGTAGCCCGCCCAGACGGGCA
TTGGCGATGTTGGAACGGTCCAGAATGTTGAAAATGAATAACAGGAACAG
CGAAGAAATCAGGTGCAAATCGATCTTGCGCACCACTGTCTGCGGTCAGC
ATCGTACGATCACCCCAGTAGTATGGAACCAGCGTATAGTCTTACGGCGC
TTCTCCAGGGCCCGTTCTTCCTCCGGGGTCAAGCCCTCGAACGATTCATC
CACCACGTCCAATGGCTTCCCAGTGGACTCGACGTGACGAGATGATGCTT
TAGTGTCAACCTCTGCCATGCTGCCGGACTATGTGGGTATGTCCTGCCGG
GGCTACAACAGCCGATATCGGAACAGTATCAAAGGCCAAGGCCACAAGGG
GTTGCGAAGGACGGATATTGAATTCGGCCTGTGAATGGGCAGATTTATAC
GAAAAGCAGAAGACGAGAAGGAAGGACTCGACCTCCTTCATATCTCAGAG
CATCATGTCTCTTATATTGCTAGCAGCTGCAGTCGGGCTGTACCCCAGAT
GCCATGACACTATCTCCCATCGTTAGTGCGGGGTCCCCACGAGCGGGAAA
AGAGCGGATATTCCCCCAGTCTGGGGTTGGCGACTGGCACTAGCTAGACC
GAACTTGTTACGGGGTCCTCGTATCGACAGATCAGCATCAGGCCAGTGTT
TATTCCACCCGAGGCTCGTGTGGTTGACTTGTCAGCTTCCCCAGATGGGG
TCCGAATGCTTCGACTATGCTTAGATACTG back to topCoding sequence (CDS) from alignment at ch7:5410831..5415910- >KJC3_011170-T1 ID=KJC3_011170-T1|Name=KJC3_011170-T1|organism=Aspergillus niger KJC3|type=CDS|length=4542bp|location=Sequence derived from alignment at ch7:5410831..5415910- (Aspergillus niger KJC3)
CATATCCCGGTTGAATGACGGCCAGCGAGGAAGCCTCCTCCCCCGCCACG
CGCGCGCGAAAGATCCGAAAGGTGACCCGCGCCTGCGATGCTTGCAAGGC
CAAAAAGAAGGCTTGTACGGGCAACATCCCCTGTGGTCCCTGCTCCCGCC
GTCACTTGGCATGCACCTACGACTCCGCCTACAATCGAGGTGTGGCGCTC
AGCCCTCCTCCCTCAACATTGCGTCCCAAGAACCATCGTCCACTGCGGGA
GCCCGACAGGTCATGTAGCAATCCAGATCCGGCCTCAGATGTGATCCAGC
CACTGCAGTCGCCCCCTGCACTTCGTTCAGCCATCGAGTATGTACGGCCA
GGCTTGCAGATCAGCCCTGCATCGGGGCCAGGCATACTCCCCGAGTCTGC
TATTGTCGATGCATCTGTTCGACGAGGCTCAGTAGACGGGACAGGTCAGT
ACTGGGGTCCAAGCTCAGCACATTCATTTCTGGGCAGGGTAGTGGAGGAC
TTGCATGCCACTCCCTCCAAATCCATTGCTCCTGCACCAGAGCCCGATGC
CTCAGCAACGGTCTCCATCTTTTCCCACGGTGATCGTGTGGTCCCGGAGG
TTCGGCTATCAGATTTTGTCTGGCCAGACCAAACCAAGGCCAAAAGTCTG
ATCCGCCGATATTTCGAGTTTGCAGCACCGACCTACCGCGTGCTCCATCA
GCCTACGCTCCATGCCATGGTACAACGCCTGTACCAGGAGGGCTCGGAGG
GCTATCGGATCGGTAGCCAGCTCGATGTAGCATCCCAGGCCGTCGTGCTC
TTGCTTCTGAGTACTGCAGCCATGTTCCGAGTCGACGAAGACGGGCGCAT
GAGAGACGCCGACGACGATGGCTGGCGCAAGAGCGAGCTTTACTACGCAC
AAGCGGAGCATCTGCTGTCGCTCGAGACGGGTGCCCCTACTCTGGCATCG
GTGCAAGCTCGTTTCCTGATGGTGCTGTATCTGCTGAGCTCCTCTCGAGC
CCAGAAGGCGTGGTTCGTGTTTGGCACAACAGTCCAGCTGATGATGGCCC
TTGGTTTGCACAATCGACGGGCGAGGAGGCTCCATGAAGAAGAAGAGGAT
CTGGTGCAGCAGGAGTGTCAACGGCGCCTTGTCTGGTGCTCTTACACCCT
GGACAAGTATCTCAGCGTGATCCTTGGTCGACCACGATTGTGGCATGACG
AAGACTTGGATGAAGATCTTCCCACACGCGTCAATGACGAGGACCTGACG
ATGCGGGAAAGGCGATTGACCAGACGTGATTGTGTGATGGACGCGCCGGT
CTTTCATGCGGTATTGGCACAAATTCTCACCCAGGCAGCCAAAAAACCCT
ACGTTCTCGCGGGTCTCTCCGATCAGATGGAGATTGAGACCATCCGAGGC
CTGTGTGGTGAGGTCGCGAAATGGCAAGCGGAACTGCCTCCTTTTCTTTC
GGGGGTCATCCAGCCCAGTAGTTTGGTTCCGGTGTTTCGGCGCCAGCTGA
CTGTTTTGCAGCTGGCTCGTTATCATGCCTTGATGTTCATCACGCGACCT
CTCTTATTGCGGGATTATGGGCAAATGTGGCCTGAGCACCGAAGCAGTTA
CCGATACCACCTGCATCTGTGTCTCACCGCAGCGCGAGAAGCAATCGAAT
CGATCCTTGGATTTGTGCGCGAGGATGAATTGTTTCCAGCATTTTGGTAC
TCACAGTACATCGCATTCAATGCTTTGTCCATCATCTATCTATACCTGAT
CCAGGTCAGACGCAACCGTCTGCCATCTGCGAGTCTCGACTTCGTCGCGA
GCCCGGAATACGCCTTGCACACGGATTTGGACGAATCCATGTTGTATAGA
CTGTCTGAGACGGCAGTGACACACCTCGCCGACGCAACAGCTCGCAACGC
TCCTTCTTGGAAATACAGTGTCATTTTGCAGGGTCTGCGACACGAGCTGG
CCCGCCTTGGGCCCCCAATATTGGAAAATGACGACGCTCACGCTACAGAA
CCGATTGCGTTATCCCGTCCAGTTCCCGAATCGATTCCTCGTCCGACCGA
ACATGGAGGTGAGACGGGTCGCCATGAACAGCAGGCAGGGCCCGCCGCAG
TCGGAGATTATAACCTTGATCCGAACGGGCTGCCGCCCATATTCGCGGGG
CTGGACCCCGCTGTTGATCCAGGGTTGCTCGATCCGAGGACCCAGTCCCT
CTTGGACACTTTCGTTATGGGCGAAAACGTGGTGCTTGACTTCTGGCCAC
AATTGGAAAGTCTACCTATCACATATCCCGGTTGAATGACGGCCAGCGAG
GAAGCCTCCTCCCCCGCCACGCGCGCGCGAAAGATCCGAAAGGTGACCCG
CGCCTGCGATGCTTGCAAGGCCAAAAAGAAGGCTTGTACGGGCAACATCC
CCTGTGGTCCCTGCTCCCGCCGTCACTTGGCATGCACCTACGACTCCGCC
TACAATCGAGGTGTGGCGCTCAGCCCTCCTCCCTCAACATTGCGTCCCAA
GAACCATCGTCCACTGCGGGAGCCCGACAGGTCATGTAGCAATCCAGATC
CGGCCTCAGATGTGATCCAGCCACTGCAGTCGCCCCCTGCACTTCGTTCA
GCCATCGAGTATGTACGGCCAGGCTTGCAGATCAGCCCTGCATCGGGGCC
AGGCATACTCCCCGAGTCTGCTATTGTCGATGCATCTGTTCGACGAGGCT
CAGTAGACGGGACAGGTCAGTACTGGGGTCCAAGCTCAGCACATTCATTT
CTGGGCAGGGTAGTGGAGGACTTGCATGCCACTCCCTCCAAATCCATTGC
TCCTGCACCAGAGCCCGATGCCTCAGCAACGGTCTCCATCTTTTCCCACG
GTGATCGTGTGGTCCCGGAGGTTCGGCTATCAGATTTTGTCTGGCCAGAC
CAAACCAAGGCCAAAAGTCTGATCCGCCGATATTTCGAGTTTGCAGCACC
GACCTACCGCGTGCTCCATCAGCCTACGCTCCATGCCATGGTACAACGCC
TGTACCAGGAGGGCTCGGAGGGCTATCGGATCGGTAGCCAGCTCGATGTA
GCATCCCAGGCCGTCGTGCTCTTGCTTCTGAGTACTGCAGCCATGTTCCG
AGTCGACGAAGACGGGCGCATGAGAGACGCCGACGACGATGGCTGGCGCA
AGAGCGAGCTTTACTACGCACAAGCGGAGCATCTGCTGTCGCTCGAGACG
GGTGCCCCTACTCTGGCATCGGTGCAAGCTCGTTTCCTGATGGTGCTGTA
TCTGCTGAGCTCCTCTCGAGCCCAGAAGGCGTGGTTCGTGTTTGGCACAA
CAGTCCAGCTGATGATGGCCCTTGGTTTGCACAATCGACGGGCGAGGAGG
CTCCATGAAGAAGAAGAGGATCTGGTGCAGCAGGAGTGTCAACGGCGCCT
TGTCTGGTGCTCTTACACCCTGGACAAGTATCTCAGCGTGATCCTTGGTC
GACCACGATTGTGGCATGACGAAGACTTGGATGAAGATCTTCCCACACGC
GTCAATGACGAGGACCTGACGATGCGGGAAAGGCGATTGACCAGACGTGA
TTGTGTGATGGACGCGCCGGTCTTTCATGCGGTATTGGCACAAATTCTCA
CCCAGGCAGCCAAAAAACCCTACGTTCTCGCGGGTCTCTCCGATCAGATG
GAGATTGAGACCATCCGAGGCCTGTGTGGTGAGGTCGCGAAATGGCAAGC
GGAACTGCCTCCTTTTCTTTCGGGGGTCATCCAGCCCAGTAGTTTGGTTC
CGGTGTTTCGGCGCCAGCTGACTGTTTTGCAGCTGGCTCGTTATCATGCC
TTGATGTTCATCACGCGACCTCTCTTATTGCGGGATTATGGGCAAATGTG
GCCTGAGCACCGAAGCAGTTACCGATACCACCTGCATCTGTGTCTCACCG
CAGCGCGAGAAGCAATCGAATCGATCCTTGGATTTGTGCGCGAGGATGAA
TTGTTTCCAGCATTTTGGTACTCACAGTACATCGCATTCAATGCTTTGTC
CATCATCTATCTATACCTGATCCAGGTCAGACGCAACCGTCTGCCATCTG
CGAGTCTCGACTTCGTCGCGAGCCCGGAATACGCCTTGCACACGGATTTG
GACGAATCCATGTTGTATAGACTGTCTGAGACGGCAGTGACACACCTCGC
CGACGCAACAGCTCGCAACGCTCCTTCTTGGAAATACAGTGTCATTTTGC
AGGGTCTGCGACACGAGCTGGCCCGCCTTGGGCCCCCAATATTGGAAAAT
GACGACGCTCACGCTACAGAACCGATTGCGTTATCCCGTCCAGTTCCCGA
ATCGATTCCTCGTCCGACCGAACATGGAGGTGAGACGGGTCGCCATGAAC
AGCAGGCAGGGCCCGCCGCAGTCGGAGATTATAACCTTGATCCGAACGGG
CTGCCGCCCATATTCGCGGGGCTGGACCCCGCTGTTGATCCAGGGTTGCT
CGATCCGAGGACCCAGTCCCTCTTGGACACTTTCGTTATGGGCGAAAACG
TGGTGCTTGACTTCTGGCCACAATTGGAAAGTCTACCTATCA back to top
Annotated Terms
The following terms have been associated with this mRNA:
Vocabulary: Cellular Component
| Term | Definition |
|---|
| GO:0042025 | host cell nucleus |
| GO:0005634 | nucleus |
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0000981 | DNA-binding transcription factor activity, RNA polymerase II-specific |
| GO:0008270 | zinc ion binding |
| GO:0003677 | DNA binding |
Vocabulary: Biological Process
| Term | Definition |
|---|
| GO:0006355 | regulation of transcription, DNA-templated |
| GO:0006351 | transcription, DNA-templated |
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following three_prime_UTR feature(s) are a part of this mRNA:
The following exon feature(s) are a part of this mRNA:
The following five_prime_UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type |
|---|
| KJC3_011170-T1.utr5p1 | KJC3_011170-T1.utr5p1 | Aspergillus niger KJC3 | five_prime_UTR |
Properties
| Property Name | Value |
|---|
| Note | antiSMASH:Cluster_7.13 |
| DBxref | InterPro:IPR036864 |
| DBxref | InterPro:IPR001138 |
| DBxref | InterPro:IPR007219 |
| DBxref | PFAM:PF00172 |
| DBxref | PFAM:PF04082 |
| Product | hypothetical protein |
Analyses
This mRNA is derived from or has results from the following analyses
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| ch7 | supercontig | ch7:5410831..5415910 - |
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