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Sequences
The following sequences are available for this feature:
mRNA from alignment at ch8:992083..994070+ Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >KJC3_011561-T1 ID=KJC3_011561-T1|Name=KJC3_011561-T1|organism=Aspergillus niger KJC3|type=mRNA|length=1988bp|location=Sequence derived from alignment at ch8:992083..994070+ (Aspergillus niger KJC3)
GTCAAGTCACGTGCTTGTATTTCAACCTCGGCTGTTTCCCTTCCGAACGG
ACAACCGACTGAGCTGGAGCCGTCAACGGTCCTACTATGATTGTCCACAG
TGCGACTTCGAGGTTGTCGCCTTGACTTTCAACAACCTTCTCCAAGCGCC
CTTATCGACCCTCCAGATCTGATATCCCGACAATGATTCAACGATGAGTT
CTACAAATTTCGCCGCTGCCCAGGAAAGGGTTCTGGAACGTCGTCGTCTC
CGCGAAGCGGAAGCTCGCGCCCGGCTGGCGGAGCAGCAGCGGACGTCGCC
GCTCAATCATCCAACCCTTCAGAGACTCCCTTATCCTCTGAATAAGCTGC
CCCAGTCAGGTTTCTCGCTATGGAACGCCATCAGAGGCCGGGAGGGTATC
AGGCCTGCGTACCGCGTCGGTCAGGTCGACGCCGAACTGTTAGATGAAGA
ATTACTGGGACTGTTGAAAGGACAGGTCGGGGACGCATTGAAATATTACG
GGGTTAGTCTAGGTCCGGATAGGATATTGGGTGATCTATCGTGGATGAAG
CTAACGCCCATCTGTACCAGCCTCAACTACGTGAAGACTGGTCTCACGAG
ATTCAATTCGCCCTCCGTGCGATCCTTTTCAAGCTCTCGATATGGGACCA
CGATGCCTCCTATGGCGCGGCGTTACAGAACCTAAAATACATTGATAGTC
GCAGCAAAGGACCTGTGCATTCGGCTCCGACAAAGTGGCAGAAATCCCTA
TATGGTCTGCTTACGGTCGGTGGCCGCTACGCTTGGGGCAAATGGGAAAG
CTGGCTGATCAACCAAGAAAGCGGATACGAAGAGGTAAGTATTTAGGTTT
ATCGGATCCTTGTGCATGATTCTCACAAATGCAGCCATCTCAGGAAGTAC
GCATGCTCGCCCGCATGACAGACCTCGTTTCCGCCTCTCATTCGATCGCC
GCGTTTGTCTCCTTCCTTGTATTCTTAGTGAATGGCCGATATCGGACCCT
GGTCGACCGCGTGCTTCGTATGCGCTTGATTCCACCTTCTGCACAGGCGA
GCCGTGAGGTGTCATTTGAATATCTTAACCGTCAACTTGTGTGGCACGCG
ATGACCGAATTTCTCCTCTTCCTTTTGCCGCTCGTGGGTATCAGTCGGTG
GCGTCGATGGCTCTCTAGACTGTGGCGGAAGACACTGTCTACCCTCAAAT
CGGGCAGCGAGGACGAAGAACAGACCGGAAAGCAGGGAGAATTGGCTTTC
CTCCCAGAAAGGACTTGCGCTATCTGCTACAAAGACAATAACCCCACGTC
CACAACAGAGGGTGAAGCCATAGCCGCGTCAGCCTCGTCGGGAGGTATTG
TTGGGTCAGCCCAAACGGATATAACTAACCCCTATGAAATTATACCCTGC
GGTTGTATATATTGTTTTGTCTGTATTGTACAGAAGCTCGAAGGCGAGGA
AGGAGAAGGCTGGGTCTGTCTACGCTGTGGCGAGATTGTGAAGAAATGCA
AACCCTGGAATGGCGATGTACTGGAAGAAACGCGACCCCAGTCAAGCTCG
GGAAAGATGGTGGGGTTTGCGGTGGATGGCGATGACAGCGGCGCGGACGA
ACTGGTGGCGGGGGATAGCACTGGGAAAACAAGCCCATTGCAGGAGGTGA
CGTCTGATGAGGCGCTTCACCACTCAAGTCAATGGTCGACCATCGAGAAG
GATGCACTGGAAGAGGTACAAGATGAGGAATCAGAGACGAACGGATCAGT
ACAGTAGAGATTCGGCATCCTGTTTGGAGGTCACTGAGGGTAGCATTGCA
TCGTCTGGCACATAGCCAGTTTAAGTCCAGTCGTTGGTGTCATGCTATGG
ATGATGATGACAGTTATTGCTTGGAGTTGGCAATTAATGGAAGATACCCA
GCACCTTATGCTCCTCTCAACCTCTTATGTGCTCACAAACAGTGCAGTAA
TAGTAGACATATCCAGTAGTCCACTCACTGTATTCTCT back to topCoding sequence (CDS) from alignment at ch8:992083..994070+ >KJC3_011561-T1 ID=KJC3_011561-T1|Name=KJC3_011561-T1|organism=Aspergillus niger KJC3|type=CDS|length=4338bp|location=Sequence derived from alignment at ch8:992083..994070+ (Aspergillus niger KJC3)
ATGAGTTCTACAAATTTCGCCGCTGCCCAGGAAAGGGTTCTGGAACGTCG
TCGTCTCCGCGAAGCGGAAGCTCGCGCCCGGCTGGCGGAGCAGCAGCGGA
CGTCGCCGCTCAATCATCCAACCCTTCAGAGACTCCCTTATCCTCTGAAT
AAGCTGCCCCAGTCAGGTTTCTCGCTATGGAACGCCATCAGAGGCCGGGA
GGGTATCAGGCCTGCGTACCGCGTCGGTCAGGTCGACGCCGAACTGTTAG
ATGAAGAATTACTGGGACTGTTGAAAGGACAGGTCGGGGACGCATTGAAA
TATTACGGGCCTCAACTACGTGAAGACTGGTCTCACGAGATTCAATTCGC
CCTCCGTGCGATCCTTTTCAAGCTCTCGATATGGGACCACGATGCCTCCT
ATGGCGCGGCGTTACAGAACCTAAAATACATTGATAGTCGCAGCAAAGGA
CCTGTGCATTCGGCTCCGACAAAGTGGCAGAAATCCCTATATGGTCTGCT
TACGGTCGGTGGCCGCTACGCTTGGGGCAAATGGGAAAGCTGGCTGATCA
ACCAAGAAAGCGGATACGAAGAGCCATCTCAGGAAGTACGCATGCTCGCC
CGCATGACAGACCTCGTTTCCGCCTCTCATTCGATCGCCGCGTTTGTCTC
CTTCCTTGTATTCTTAGTGAATGGCCGATATCGGACCCTGGTCGACCGCG
TGCTTCGTATGCGCTTGATTCCACCTTCTGCACAGGCGAGCCGTGAGGTG
TCATTTGAATATCTTAACCGTCAACTTGTGTGGCACGCGATGACCGAATT
TCTCCTCTTCCTTTTGCCGCTCGTGGGTATCAGTCGGTGGCGTCGATGGC
TCTCTAGACTGTGGCGGAAGACACTGTCTACCCTCAAATCGGGCAGCGAG
GACGAAGAACAGACCGGAAAGCAGGGAGAATTGGCTTTCCTCCCAGAAAG
GACTTGCGCTATCTGCTACAAAGACAATAACCCCACGTCCACAACAGAGG
GTGAAGCCATAGCCGCGTCAGCCTCGTCGGGAGGTATTGTTGGGTCAGCC
CAAACGGATATAACTAACCCCTATGAAATTATACCCTGCGGTTGTATATA
TTGTTTTGTCTGTATTGTACAGAAGCTCGAAGGCGAGGAAGGAGAAGGCT
GGGTCTGTCTACGCTGTGGCGAGATTGTGAAGAAATGCAAACCCTGGAAT
GGCGATGTACTGGAAGAAACGCGACCCCAGTCAAGCTCGGGAAAGATGGT
GGGGTTTGCGGTGGATGGCGATGACAGCGGCGCGGACGAACTGGTGGCGG
GGGATAGCACTGGGAAAACAAGCCCATTGCAGGAGGTGACGTCTGATGAG
GCGCTTCACCACTCAAGTCAATGGTCGACCATCGAGAAGGATGCACTGGA
AGAGGTACAAGATGAGGAATCAGAGACGAACGGATCAGTACAGTAGATGA
GTTCTACAAATTTCGCCGCTGCCCAGGAAAGGGTTCTGGAACGTCGTCGT
CTCCGCGAAGCGGAAGCTCGCGCCCGGCTGGCGGAGCAGCAGCGGACGTC
GCCGCTCAATCATCCAACCCTTCAGAGACTCCCTTATCCTCTGAATAAGC
TGCCCCAGTCAGGTTTCTCGCTATGGAACGCCATCAGAGGCCGGGAGGGT
ATCAGGCCTGCGTACCGCGTCGGTCAGGTCGACGCCGAACTGTTAGATGA
AGAATTACTGGGACTGTTGAAAGGACAGGTCGGGGACGCATTGAAATATT
ACGGGCCTCAACTACGTGAAGACTGGTCTCACGAGATTCAATTCGCCCTC
CGTGCGATCCTTTTCAAGCTCTCGATATGGGACCACGATGCCTCCTATGG
CGCGGCGTTACAGAACCTAAAATACATTGATAGTCGCAGCAAAGGACCTG
TGCATTCGGCTCCGACAAAGTGGCAGAAATCCCTATATGGTCTGCTTACG
GTCGGTGGCCGCTACGCTTGGGGCAAATGGGAAAGCTGGCTGATCAACCA
AGAAAGCGGATACGAAGAGCCATCTCAGGAAGTACGCATGCTCGCCCGCA
TGACAGACCTCGTTTCCGCCTCTCATTCGATCGCCGCGTTTGTCTCCTTC
CTTGTATTCTTAGTGAATGGCCGATATCGGACCCTGGTCGACCGCGTGCT
TCGTATGCGCTTGATTCCACCTTCTGCACAGGCGAGCCGTGAGGTGTCAT
TTGAATATCTTAACCGTCAACTTGTGTGGCACGCGATGACCGAATTTCTC
CTCTTCCTTTTGCCGCTCGTGGGTATCAGTCGGTGGCGTCGATGGCTCTC
TAGACTGTGGCGGAAGACACTGTCTACCCTCAAATCGGGCAGCGAGGACG
AAGAACAGACCGGAAAGCAGGGAGAATTGGCTTTCCTCCCAGAAAGGACT
TGCGCTATCTGCTACAAAGACAATAACCCCACGTCCACAACAGAGGGTGA
AGCCATAGCCGCGTCAGCCTCGTCGGGAGGTATTGTTGGGTCAGCCCAAA
CGGATATAACTAACCCCTATGAAATTATACCCTGCGGTTGTATATATTGT
TTTGTCTGTATTGTACAGAAGCTCGAAGGCGAGGAAGGAGAAGGCTGGGT
CTGTCTACGCTGTGGCGAGATTGTGAAGAAATGCAAACCCTGGAATGGCG
ATGTACTGGAAGAAACGCGACCCCAGTCAAGCTCGGGAAAGATGGTGGGG
TTTGCGGTGGATGGCGATGACAGCGGCGCGGACGAACTGGTGGCGGGGGA
TAGCACTGGGAAAACAAGCCCATTGCAGGAGGTGACGTCTGATGAGGCGC
TTCACCACTCAAGTCAATGGTCGACCATCGAGAAGGATGCACTGGAAGAG
GTACAAGATGAGGAATCAGAGACGAACGGATCAGTACAGTAGATGAGTTC
TACAAATTTCGCCGCTGCCCAGGAAAGGGTTCTGGAACGTCGTCGTCTCC
GCGAAGCGGAAGCTCGCGCCCGGCTGGCGGAGCAGCAGCGGACGTCGCCG
CTCAATCATCCAACCCTTCAGAGACTCCCTTATCCTCTGAATAAGCTGCC
CCAGTCAGGTTTCTCGCTATGGAACGCCATCAGAGGCCGGGAGGGTATCA
GGCCTGCGTACCGCGTCGGTCAGGTCGACGCCGAACTGTTAGATGAAGAA
TTACTGGGACTGTTGAAAGGACAGGTCGGGGACGCATTGAAATATTACGG
GCCTCAACTACGTGAAGACTGGTCTCACGAGATTCAATTCGCCCTCCGTG
CGATCCTTTTCAAGCTCTCGATATGGGACCACGATGCCTCCTATGGCGCG
GCGTTACAGAACCTAAAATACATTGATAGTCGCAGCAAAGGACCTGTGCA
TTCGGCTCCGACAAAGTGGCAGAAATCCCTATATGGTCTGCTTACGGTCG
GTGGCCGCTACGCTTGGGGCAAATGGGAAAGCTGGCTGATCAACCAAGAA
AGCGGATACGAAGAGCCATCTCAGGAAGTACGCATGCTCGCCCGCATGAC
AGACCTCGTTTCCGCCTCTCATTCGATCGCCGCGTTTGTCTCCTTCCTTG
TATTCTTAGTGAATGGCCGATATCGGACCCTGGTCGACCGCGTGCTTCGT
ATGCGCTTGATTCCACCTTCTGCACAGGCGAGCCGTGAGGTGTCATTTGA
ATATCTTAACCGTCAACTTGTGTGGCACGCGATGACCGAATTTCTCCTCT
TCCTTTTGCCGCTCGTGGGTATCAGTCGGTGGCGTCGATGGCTCTCTAGA
CTGTGGCGGAAGACACTGTCTACCCTCAAATCGGGCAGCGAGGACGAAGA
ACAGACCGGAAAGCAGGGAGAATTGGCTTTCCTCCCAGAAAGGACTTGCG
CTATCTGCTACAAAGACAATAACCCCACGTCCACAACAGAGGGTGAAGCC
ATAGCCGCGTCAGCCTCGTCGGGAGGTATTGTTGGGTCAGCCCAAACGGA
TATAACTAACCCCTATGAAATTATACCCTGCGGTTGTATATATTGTTTTG
TCTGTATTGTACAGAAGCTCGAAGGCGAGGAAGGAGAAGGCTGGGTCTGT
CTACGCTGTGGCGAGATTGTGAAGAAATGCAAACCCTGGAATGGCGATGT
ACTGGAAGAAACGCGACCCCAGTCAAGCTCGGGAAAGATGGTGGGGTTTG
CGGTGGATGGCGATGACAGCGGCGCGGACGAACTGGTGGCGGGGGATAGC
ACTGGGAAAACAAGCCCATTGCAGGAGGTGACGTCTGATGAGGCGCTTCA
CCACTCAAGTCAATGGTCGACCATCGAGAAGGATGCACTGGAAGAGGTAC
AAGATGAGGAATCAGAGACGAACGGATCAGTACAGTAG back to top
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following five_prime_UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type |
|---|
| KJC3_011561-T1.utr5p1 | KJC3_011561-T1.utr5p1 | Aspergillus niger KJC3 | five_prime_UTR |
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following three_prime_UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type |
|---|
| KJC3_011561-T1.utr3p1 | KJC3_011561-T1.utr3p1 | Aspergillus niger KJC3 | three_prime_UTR |
Properties
| Property Name | Value |
|---|
| DBxref | InterPro:IPR006845 |
| DBxref | PFAM:PF04757 |
| Product | hypothetical protein |
Analyses
This mRNA is derived from or has results from the following analyses
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| ch8 | supercontig | ch8:992083..994070 + |
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