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Sequences
The following sequences are available for this feature:
mRNA from alignment at ch8:1565891..1567030- Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >KJC3_011775-T1 ID=KJC3_011775-T1|Name=KJC3_011775-T1|organism=Aspergillus niger KJC3|type=mRNA|length=1140bp|location=Sequence derived from alignment at ch8:1565891..1567030- (Aspergillus niger KJC3)
AACGGACTCCGACTCCGATTCACAGCCTAAACCGTTGAGTATTAAGATCC
CACTCGGAGCAACATGCTTGCACCCACAGCTTTACGGCAAACTGCCGAAG
TAGCAATGGCAGAGACGCCTGTTGCGCCTACTATGTCAGGTCAGTCCCCG
CCAGCGCTTTACGGGAACCCGACTGGGTGGCCATCCTAACGTCCATTAGA
GCAAGATGAGGAAATTTTGATCGACGCCCAAACGTCGGCAGATCAGGTCT
CTGCAGGACTCGCGCCTGAGATTGAGCCTACTCAAGACAGCGATATGCGT
ATTGACGAAGAGGGACGGCCCCTCTTCACACCAGCAAAAGACACTAGCAG
GGTATATCGAGTTGAAAGCAGGAAGGTTCCTGTACCACCGCATAGGATGA
CTCCATTGAAGGCTAGCTGGGCACGCATCTATCCCCCGCTTGTCGAACAC
CTCAAACTTCAAGTGCGGATGAACATCAAGAACCGAGCTGTGGAGCTACG
TACGTCACGATTCACGACCGATACGGAAGCCCTGCAGAAGGGCGAGGACT
TCGTCAAAGCTTTTACTCTTGGATTTGATGTCGACGACGCTATCGCACTT
CTCAGATTGGATGATCTTTACATACGTTCATTCGAGATTCGGGATATCAA
AGCCCTTAACGGAGAGCACCTCAGTCGTGCAATTGGACGCTGTGCTGGTA
AAGATGGGCGAACAAAGTTTGCTATAGAGAACGCTACTCGGACAAGAATC
GTCATTGCAGACCAGAAGATTCACTTGCTAGGCGCAGTGAAGAATGTCGA
CTGTGCCCAGCAGGCCATTGTTAGCTTGATTCTTGGCAGTCCACCGGTCA
GTAACCTTGTGCCAATCCTTTCTATTGTCGTTTCAGAAGATGCAACATCT
GCTAACTCCTCAATAGGGCAAAGTGTATGGGAACCTTCGTAAGGTGGCTT
CTCGCATGAAGGAGCGTTTTTAAGAAAACGGACCGTCAGCATTATGGGAA
CTACGGTCAAGGGTGTCTCTGCCTCTACCAGGATTTTTTCTTTTTTCATG
ACATGGTATCGGCGTTAGGGGTTGTGGCACATGATTTGGATAGAGCATAA
TGGATATGACGACACAGAAACGAGGGAAGGATTACTCCAC back to topCoding sequence (CDS) from alignment at ch8:1565891..1567030- >KJC3_011775-T1 ID=KJC3_011775-T1|Name=KJC3_011775-T1|organism=Aspergillus niger KJC3|type=CDS|length=2340bp|location=Sequence derived from alignment at ch8:1565891..1567030- (Aspergillus niger KJC3)
GGCAAAGTGTATGGGAACCTTCGTAAGGTGGCTTCTCGCATGAAGGAGCG
TTTTTAAAGCAAGATGAGGAAATTTTGATCGACGCCCAAACGTCGGCAGA
TCAGGTCTCTGCAGGACTCGCGCCTGAGATTGAGCCTACTCAAGACAGCG
ATATGCGTATTGACGAAGAGGGACGGCCCCTCTTCACACCAGCAAAAGAC
ACTAGCAGGGTATATCGAGTTGAAAGCAGGAAGGTTCCTGTACCACCGCA
TAGGATGACTCCATTGAAGGCTAGCTGGGCACGCATCTATCCCCCGCTTG
TCGAACACCTCAAACTTCAAGTGCGGATGAACATCAAGAACCGAGCTGTG
GAGCTACGTACGTCACGATTCACGACCGATACGGAAGCCCTGCAGAAGGG
CGAGGACTTCGTCAAAGCTTTTACTCTTGGATTTGATGTCGACGACGCTA
TCGCACTTCTCAGATTGGATGATCTTTACATACGTTCATTCGAGATTCGG
GATATCAAAGCCCTTAACGGAGAGCACCTCAGTCGTGCAATTGGACGCTG
TGCTGGTAAAGATGGGCGAACAAAGTTTGCTATAGAGAACGCTACTCGGA
CAAGAATCGTCATTGCAGACCAGAAGATTCACTTGCTAGGCGCAGTGAAG
AATGTCGACTGTGCCCAGCAGGCCATTGTTAGCTTGATTCTTGGCAGTCC
ACCGATGCTTGCACCCACAGCTTTACGGCAAACTGCCGAAGTAGCAATGG
CAGAGACGCCTGTTGCGCCTACTATGTCAGGGCAAAGTGTATGGGAACCT
TCGTAAGGTGGCTTCTCGCATGAAGGAGCGTTTTTAAAGCAAGATGAGGA
AATTTTGATCGACGCCCAAACGTCGGCAGATCAGGTCTCTGCAGGACTCG
CGCCTGAGATTGAGCCTACTCAAGACAGCGATATGCGTATTGACGAAGAG
GGACGGCCCCTCTTCACACCAGCAAAAGACACTAGCAGGGTATATCGAGT
TGAAAGCAGGAAGGTTCCTGTACCACCGCATAGGATGACTCCATTGAAGG
CTAGCTGGGCACGCATCTATCCCCCGCTTGTCGAACACCTCAAACTTCAA
GTGCGGATGAACATCAAGAACCGAGCTGTGGAGCTACGTACGTCACGATT
CACGACCGATACGGAAGCCCTGCAGAAGGGCGAGGACTTCGTCAAAGCTT
TTACTCTTGGATTTGATGTCGACGACGCTATCGCACTTCTCAGATTGGAT
GATCTTTACATACGTTCATTCGAGATTCGGGATATCAAAGCCCTTAACGG
AGAGCACCTCAGTCGTGCAATTGGACGCTGTGCTGGTAAAGATGGGCGAA
CAAAGTTTGCTATAGAGAACGCTACTCGGACAAGAATCGTCATTGCAGAC
CAGAAGATTCACTTGCTAGGCGCAGTGAAGAATGTCGACTGTGCCCAGCA
GGCCATTGTTAGCTTGATTCTTGGCAGTCCACCGATGCTTGCACCCACAG
CTTTACGGCAAACTGCCGAAGTAGCAATGGCAGAGACGCCTGTTGCGCCT
ACTATGTCAGGGCAAAGTGTATGGGAACCTTCGTAAGGTGGCTTCTCGCA
TGAAGGAGCGTTTTTAAAGCAAGATGAGGAAATTTTGATCGACGCCCAAA
CGTCGGCAGATCAGGTCTCTGCAGGACTCGCGCCTGAGATTGAGCCTACT
CAAGACAGCGATATGCGTATTGACGAAGAGGGACGGCCCCTCTTCACACC
AGCAAAAGACACTAGCAGGGTATATCGAGTTGAAAGCAGGAAGGTTCCTG
TACCACCGCATAGGATGACTCCATTGAAGGCTAGCTGGGCACGCATCTAT
CCCCCGCTTGTCGAACACCTCAAACTTCAAGTGCGGATGAACATCAAGAA
CCGAGCTGTGGAGCTACGTACGTCACGATTCACGACCGATACGGAAGCCC
TGCAGAAGGGCGAGGACTTCGTCAAAGCTTTTACTCTTGGATTTGATGTC
GACGACGCTATCGCACTTCTCAGATTGGATGATCTTTACATACGTTCATT
CGAGATTCGGGATATCAAAGCCCTTAACGGAGAGCACCTCAGTCGTGCAA
TTGGACGCTGTGCTGGTAAAGATGGGCGAACAAAGTTTGCTATAGAGAAC
GCTACTCGGACAAGAATCGTCATTGCAGACCAGAAGATTCACTTGCTAGG
CGCAGTGAAGAATGTCGACTGTGCCCAGCAGGCCATTGTTAGCTTGATTC
TTGGCAGTCCACCGATGCTTGCACCCACAGCTTTACGGCAAACTGCCGAA
GTAGCAATGGCAGAGACGCCTGTTGCGCCTACTATGTCAG back to top
Annotated Terms
The following terms have been associated with this mRNA:
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0003723 | RNA binding |
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following three_prime_UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type |
|---|
| KJC3_011775-T1.utr3p1 | KJC3_011775-T1.utr3p1 | Aspergillus niger KJC3 | three_prime_UTR |
The following exon feature(s) are a part of this mRNA:
The following five_prime_UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type |
|---|
| KJC3_011775-T1.utr5p1 | KJC3_011775-T1.utr5p1 | Aspergillus niger KJC3 | five_prime_UTR |
Properties
| Property Name | Value |
|---|
| Note | BUSCO:EOG09264SQJ |
| DBxref | InterPro:IPR036612 |
| Product | pre-rRNA-processing protein pno1 |
Analyses
This mRNA is derived from or has results from the following analyses
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| ch8 | supercontig | ch8:1565891..1567030 - |
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