|
|
Sequences
The following sequences are available for this feature:
mRNA from alignment at ch8:4227676..4228371+ Legend: five_prime_UTRexonpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >KJC3_012664-T1 ID=KJC3_012664-T1|Name=KJC3_012664-T1|organism=Aspergillus niger KJC3|type=mRNA|length=696bp|location=Sequence derived from alignment at ch8:4227676..4228371+ (Aspergillus niger KJC3)
GGAAATTCTTCTTTCGCACACAAAGGCGGAAATTTTGGTGATAAGCGACC
CGCTCTTGCACCGCCTAAACTCTTAGTTTCATTCCGGATATCGGTGGTAA
AACACTTTGCGACGCTCACTAGCGAATCCATCAGGCAGTTCTGTTTTTGG
GCCGCAGTCTATCAAAATGGGAGCTGTCAGGAAAATCAAGACGAAGCGCA
GGACCAGGTATGTAGGCTAATATCTTTAACGATGAACATGATTATGGCCC
TAGGTAGAAGGGTTGCGTAAAGCTGAATAGACGCTAATGATCTGATACAA
TCGACAGAGACTATGATCAGGTCCGAGCTGATATCGCATCCGCGAGACAC
CTCGAGCTGTACAAAGCTACGAAAGATGAGGAGGACCTTCCCGGCCTAGG
AAAGCATTACTGCGTCGAGTGCTCCAAATGGTTTGAGAGCGAGCATAACA
TGGTCGCCCATACGAAGGGCAAGAACCACAAGAGAAGGTGTGTGGCCAAC
ATATCTATGATGTCGCTGCTGCAGGCGCAAGTACTTTCTGGACGCATAAA
TGCTAACCTATGCGCTCGTTGTTAGACTCCGCATCTTGCGCGAAGAGGCA
CACACACAGAAGGCTGCTGAGGCTGCTGTCGGCTTGGGTACAGACAATGG
TGTGAGGTCGCAAGAGACTACCGAGATGGTCATTATGGAGGATTAG back to topCoding sequence (CDS) from alignment at ch8:4227676..4228371+ >KJC3_012664-T1 ID=KJC3_012664-T1|Name=KJC3_012664-T1|organism=Aspergillus niger KJC3|type=CDS|length=1026bp|location=Sequence derived from alignment at ch8:4227676..4228371+ (Aspergillus niger KJC3)
ATGGGAGCTGTCAGGAAAATCAAGACGAAGCGCAGGACCAGAGACTATGA
TCAGGTCCGAGCTGATATCGCATCCGCGAGACACCTCGAGCTGTACAAAG
CTACGAAAGATGAGGAGGACCTTCCCGGCCTAGGAAAGCATTACTGCGTC
GAGTGCTCCAAATGGTTTGAGAGCGAGCATAACATGGTCGCCCATACGAA
GGGCAAGAACCACAAGAGAAGACTCCGCATCTTGCGCGAAGAGGCACACA
CACAGAAGGCTGCTGAGGCTGCTGTCGGCTTGGGTACAGACAATGGTGTG
AGGTCGCAAGAGACTACCGAGATGGTCATTATGGAGGATTAGATGGGAGC
TGTCAGGAAAATCAAGACGAAGCGCAGGACCAGAGACTATGATCAGGTCC
GAGCTGATATCGCATCCGCGAGACACCTCGAGCTGTACAAAGCTACGAAA
GATGAGGAGGACCTTCCCGGCCTAGGAAAGCATTACTGCGTCGAGTGCTC
CAAATGGTTTGAGAGCGAGCATAACATGGTCGCCCATACGAAGGGCAAGA
ACCACAAGAGAAGACTCCGCATCTTGCGCGAAGAGGCACACACACAGAAG
GCTGCTGAGGCTGCTGTCGGCTTGGGTACAGACAATGGTGTGAGGTCGCA
AGAGACTACCGAGATGGTCATTATGGAGGATTAGATGGGAGCTGTCAGGA
AAATCAAGACGAAGCGCAGGACCAGAGACTATGATCAGGTCCGAGCTGAT
ATCGCATCCGCGAGACACCTCGAGCTGTACAAAGCTACGAAAGATGAGGA
GGACCTTCCCGGCCTAGGAAAGCATTACTGCGTCGAGTGCTCCAAATGGT
TTGAGAGCGAGCATAACATGGTCGCCCATACGAAGGGCAAGAACCACAAG
AGAAGACTCCGCATCTTGCGCGAAGAGGCACACACACAGAAGGCTGCTGA
GGCTGCTGTCGGCTTGGGTACAGACAATGGTGTGAGGTCGCAAGAGACTA
CCGAGATGGTCATTATGGAGGATTAG back to top
Annotated Terms
The following terms have been associated with this mRNA:
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0003676 | nucleic acid binding |
| GO:0008270 | zinc ion binding |
Relationships
This mRNA is a part of the following gene feature(s):
The following five_prime_UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type |
|---|
| KJC3_012664-T1.utr5p1 | KJC3_012664-T1.utr5p1 | Aspergillus niger KJC3 | five_prime_UTR |
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Properties
| Property Name | Value |
|---|
| DBxref | InterPro:IPR036236 |
| DBxref | InterPro:IPR013087 |
| DBxref | InterPro:IPR022755 |
| DBxref | InterPro:IPR003604 |
| DBxref | PFAM:PF12171 |
| Product | hypothetical protein |
Analyses
This mRNA is derived from or has results from the following analyses
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| ch8 | supercontig | ch8:4227676..4228371 + |
|
