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Sequences
The following sequences are available for this feature:
mRNA from alignment at KZ851933.1:305820..306997+ Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >M747DRAFT_285724-T1 ID=M747DRAFT_285724-T1|Name=M747DRAFT_285724-T1|organism=Aspergillus niger ATCC 13496|type=mRNA|length=1178bp|location=Sequence derived from alignment at KZ851933.1:305820..306997+ (Aspergillus niger ATCC 13496)
CCCAGAAAGTCCGCCGTGACCCCCGCCGGGGCCAAATCCGCCTCCGCAAT
CATGAACAAAGAAGCATTGCTCTCCGTCACTGAGCGCGACTTCATCCTCA
ATGCGCTGCGCGAGGATGTACGACTGGACGGTCGCGGTTTCGACCAGCTA
CGTCCGCTGAATGTGTCATTCGGGGAGGAGTATGGACATGTGAAGGTGCA
GCTCGGCAAAACCAGGTAGGTAGACTCATCGTTCAGCTTGCTTCAACAAC
ACTAACTGATTCTTTTCTGCTGCAGCCTCATTGTCCGTATCTCAGCTGAA
GTCACAAAACCTCACGATGATCGTCCGTTCGACGGTCTTTTCACAATCGC
CATGGAGCTGACTGCCATGGGCTCCCCCGCTTGGGACAATGGCCGGTATG
GATATTCTCATCAAGCCGCGAGCGAGCAATAACTCAGCTGACCATTTCTG
CTTCAGACAAGGAGACTTTGAAACATATGTCACCAATGTCCTCGACCGTG
TCGTTCGCCATTCCAACGCCCTGGACACCGAGTCCCTCTGTATCCTCAAG
GGTGTCAGCTGCTGGAGCATCCGCGCGGACGTCCACGTTACCGATTACGA
TGGCAATCTGATTGATGCGGCTTGTATTGGTATCATGGCTGGATTGCAGC
ATTTCCGCCGTCAAGACGCTGTAGTCAAGGATGGCCAGGTGATTGTGTAC
AGACTCGATGAACGAGTTCCTGTCGCATTGAACATTACACATAAGCCGCT
GTCTGTTACTTTCCACACATTCGATGAAGGAAAACGGGTCATCATTGATG
CAACTCGGAAGGAGGAGCAAGCAGCGGAAGCTGACGTCGTGATTGGCATC
AACAACGCTGGTGATGTGTGCTTCGTCTCCAAGTTCTCCGGATCGCCAGT
GGACGCGATGGTCTTTGTGGATAAGACTTCCGTTGCCCTGGAGAAGGTCA
AGGAGATCAATGCAATCATTGATAAGGCGTTACAAGCCGATCTCTCGAAA
CGAGCGAAGATTGGCATGGCTGAGGAGTCGCGGGCGGAAAACGATCGGTG
ATTGGGCTTGAGCTTAAAGAAAGCGAATACCATTAATGAGTTAAGACACC
GCATTAGAATTGATGTATGATCAAATCAAAGCCATTAGTTCGGCAAACGT
CTTATAAAACTACGCCGGTAGATGAAGC back to topCoding sequence (CDS) from alignment at KZ851933.1:305820..306997+ >M747DRAFT_285724-T1 ID=M747DRAFT_285724-T1|Name=M747DRAFT_285724-T1|organism=Aspergillus niger ATCC 13496|type=CDS|length=2637bp|location=Sequence derived from alignment at KZ851933.1:305820..306997+ (Aspergillus niger ATCC 13496)
ATGAACAAAGAAGCATTGCTCTCCGTCACTGAGCGCGACTTCATCCTCAA
TGCGCTGCGCGAGGATGTACGACTGGACGGTCGCGGTTTCGACCAGCTAC
GTCCGCTGAATGTGTCATTCGGGGAGGAGTATGGACATGTGAAGGTGCAG
CTCGGCAAAACCAGCCTCATTGTCCGTATCTCAGCTGAAGTCACAAAACC
TCACGATGATCGTCCGTTCGACGGTCTTTTCACAATCGCCATGGAGCTGA
CTGCCATGGGCTCCCCCGCTTGGGACAATGGCCGACAAGGAGACTTTGAA
ACATATGTCACCAATGTCCTCGACCGTGTCGTTCGCCATTCCAACGCCCT
GGACACCGAGTCCCTCTGTATCCTCAAGGGTGTCAGCTGCTGGAGCATCC
GCGCGGACGTCCACGTTACCGATTACGATGGCAATCTGATTGATGCGGCT
TGTATTGGTATCATGGCTGGATTGCAGCATTTCCGCCGTCAAGACGCTGT
AGTCAAGGATGGCCAGGTGATTGTGTACAGACTCGATGAACGAGTTCCTG
TCGCATTGAACATTACACATAAGCCGCTGTCTGTTACTTTCCACACATTC
GATGAAGGAAAACGGGTCATCATTGATGCAACTCGGAAGGAGGAGCAAGC
AGCGGAAGCTGACGTCGTGATTGGCATCAACAACGCTGGTGATGTGTGCT
TCGTCTCCAAGTTCTCCGGATCGCCAGTGGACGCGATGGTCTTTGTGGAT
AAGACTTCCGTTGCCCTGGAGAAGGTCAAGGAGATCAATGCAATCATTGA
TAAGGCGTTACAAGCCGATCTCTCGAAACGAGCGAAGATTGGCATGGCTG
AGGAGTCGCGGGCGGAAAACGATCGGTGAATGAACAAAGAAGCATTGCTC
TCCGTCACTGAGCGCGACTTCATCCTCAATGCGCTGCGCGAGGATGTACG
ACTGGACGGTCGCGGTTTCGACCAGCTACGTCCGCTGAATGTGTCATTCG
GGGAGGAGTATGGACATGTGAAGGTGCAGCTCGGCAAAACCAGCCTCATT
GTCCGTATCTCAGCTGAAGTCACAAAACCTCACGATGATCGTCCGTTCGA
CGGTCTTTTCACAATCGCCATGGAGCTGACTGCCATGGGCTCCCCCGCTT
GGGACAATGGCCGACAAGGAGACTTTGAAACATATGTCACCAATGTCCTC
GACCGTGTCGTTCGCCATTCCAACGCCCTGGACACCGAGTCCCTCTGTAT
CCTCAAGGGTGTCAGCTGCTGGAGCATCCGCGCGGACGTCCACGTTACCG
ATTACGATGGCAATCTGATTGATGCGGCTTGTATTGGTATCATGGCTGGA
TTGCAGCATTTCCGCCGTCAAGACGCTGTAGTCAAGGATGGCCAGGTGAT
TGTGTACAGACTCGATGAACGAGTTCCTGTCGCATTGAACATTACACATA
AGCCGCTGTCTGTTACTTTCCACACATTCGATGAAGGAAAACGGGTCATC
ATTGATGCAACTCGGAAGGAGGAGCAAGCAGCGGAAGCTGACGTCGTGAT
TGGCATCAACAACGCTGGTGATGTGTGCTTCGTCTCCAAGTTCTCCGGAT
CGCCAGTGGACGCGATGGTCTTTGTGGATAAGACTTCCGTTGCCCTGGAG
AAGGTCAAGGAGATCAATGCAATCATTGATAAGGCGTTACAAGCCGATCT
CTCGAAACGAGCGAAGATTGGCATGGCTGAGGAGTCGCGGGCGGAAAACG
ATCGGTGAATGAACAAAGAAGCATTGCTCTCCGTCACTGAGCGCGACTTC
ATCCTCAATGCGCTGCGCGAGGATGTACGACTGGACGGTCGCGGTTTCGA
CCAGCTACGTCCGCTGAATGTGTCATTCGGGGAGGAGTATGGACATGTGA
AGGTGCAGCTCGGCAAAACCAGCCTCATTGTCCGTATCTCAGCTGAAGTC
ACAAAACCTCACGATGATCGTCCGTTCGACGGTCTTTTCACAATCGCCAT
GGAGCTGACTGCCATGGGCTCCCCCGCTTGGGACAATGGCCGACAAGGAG
ACTTTGAAACATATGTCACCAATGTCCTCGACCGTGTCGTTCGCCATTCC
AACGCCCTGGACACCGAGTCCCTCTGTATCCTCAAGGGTGTCAGCTGCTG
GAGCATCCGCGCGGACGTCCACGTTACCGATTACGATGGCAATCTGATTG
ATGCGGCTTGTATTGGTATCATGGCTGGATTGCAGCATTTCCGCCGTCAA
GACGCTGTAGTCAAGGATGGCCAGGTGATTGTGTACAGACTCGATGAACG
AGTTCCTGTCGCATTGAACATTACACATAAGCCGCTGTCTGTTACTTTCC
ACACATTCGATGAAGGAAAACGGGTCATCATTGATGCAACTCGGAAGGAG
GAGCAAGCAGCGGAAGCTGACGTCGTGATTGGCATCAACAACGCTGGTGA
TGTGTGCTTCGTCTCCAAGTTCTCCGGATCGCCAGTGGACGCGATGGTCT
TTGTGGATAAGACTTCCGTTGCCCTGGAGAAGGTCAAGGAGATCAATGCA
ATCATTGATAAGGCGTTACAAGCCGATCTCTCGAAACGAGCGAAGATTGG
CATGGCTGAGGAGTCGCGGGCGGAAAACGATCGGTGA back to top
Annotated Terms
The following terms have been associated with this mRNA:
Vocabulary: Cellular Component
| Term | Definition |
|---|
| GO:0000178 | exosome (RNase complex) |
Vocabulary: Biological Process
| Term | Definition |
|---|
| GO:0006396 | RNA processing |
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following five_prime_UTR feature(s) are a part of this mRNA:
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following three_prime_UTR feature(s) are a part of this mRNA:
Properties
| Property Name | Value |
|---|
| Note | BUSCO:EOG09264398 |
| DBxref | InterPro:IPR036345 |
| DBxref | InterPro:IPR020568 |
| DBxref | InterPro:IPR033100 |
| DBxref | InterPro:IPR015847 |
| DBxref | InterPro:IPR001247 |
| DBxref | InterPro:IPR027408 |
| DBxref | PFAM:PF03725 |
| DBxref | PFAM:PF01138 |
| Product | exosome complex endonuclease 2/ribosomal RNA processing protein |
Analyses
This mRNA is derived from or has results from the following analyses
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| KZ851933.1 | supercontig | KZ851933.1:305820..306997 + |
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