You are here

Home

CBS51388_002471-T1, CBS51388_002471-T1 (mRNA) Aspergillus niger CBS 513.88

Overview
NameCBS51388_002471-T1
Unique NameCBS51388_002471-T1
TypemRNA
OrganismAspergillus niger CBS 513.88
Sequences
The following sequences are available for this feature:

mRNA from alignment at An03:159723..160237-

Legend: polypeptideCDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
>CBS51388_002471-T1 ID=CBS51388_002471-T1|Name=CBS51388_002471-T1|organism=Aspergillus niger CBS 513.88|type=mRNA|length=515bp|location=Sequence derived from alignment at An03:159723..160237- (Aspergillus niger CBS 513.88)
ATGCCTTCATTTCCTGCTCCTGCGGAGAGGGCCCAGACCCTGCAAAGCCT
TATCGGGTACATCTTCAATGACCCGAATCGTGCGATGGAAGCACTAGTCG
CTGCTGGGGTTCACATGCCCGGATTGATCAATCGCACGGATGGTCACAAG
CAACTTGCTCTCGTTGGGGATGCCGTTCTCAGAATGATTCTGGCGTTGGA
CGGATACGAAGCCCGAAAGGGCAGAGGTAGATATTATTCCATTTAACCAG
AATCACATTCTCATCCCTTATGGCAGAATTCACGAACAGTATCCTCTCAA
CGAAGGCCGGCAACACATACATCGCCCAGGCTGGACGTAACCTGGGCCTG
GACAAACTTGTCATTGTCAATCCAGCCCAGGCCGGAATGGTCGCGGACAA
AGTCATGGCTAGCGCCGTTGAAGCTATTATCGGAGCTGTCTTCATGGACA
GCGATGGCTCTGTTGAGTCCGTGCGACCTGTCCTGGCTACCTTGGGCCTT
GACTGGCCTGCTTGA
back to top

Coding sequence (CDS) from alignment at An03:159723..160237-

>CBS51388_002471-T1 ID=CBS51388_002471-T1|Name=CBS51388_002471-T1|organism=Aspergillus niger CBS 513.88|type=CDS|length=930bp|location=Sequence derived from alignment at An03:159723..160237- (Aspergillus niger CBS 513.88)
AATTCACGAACAGTATCCTCTCAACGAAGGCCGGCAACACATACATCGCC
CAGGCTGGACGTAACCTGGGCCTGGACAAACTTGTCATTGTCAATCCAGC
CCAGGCCGGAATGGTCGCGGACAAAGTCATGGCTAGCGCCGTTGAAGCTA
TTATCGGAGCTGTCTTCATGGACAGCGATGGCTCTGTTGAGTCCGTGCGA
CCTGTCCTGGCTACCTTGGGCCTTGACTGGCCTGCTTGAATGCCTTCATT
TCCTGCTCCTGCGGAGAGGGCCCAGACCCTGCAAAGCCTTATCGGGTACA
TCTTCAATGACCCGAATCGTGCGATGGAAGCACTAGTCGCTGCTGGGGTT
CACATGCCCGGATTGATCAATCGCACGGATGGTCACAAGCAACTTGCTCT
CGTTGGGGATGCCGTTCTCAGAATGATTCTGGCGTTGGACGGATACGAAG
CCCGAAAGGGCAGAGAATTCACGAACAGTATCCTCTCAACGAAGGCCGGC
AACACATACATCGCCCAGGCTGGACGTAACCTGGGCCTGGACAAACTTGT
CATTGTCAATCCAGCCCAGGCCGGAATGGTCGCGGACAAAGTCATGGCTA
GCGCCGTTGAAGCTATTATCGGAGCTGTCTTCATGGACAGCGATGGCTCT
GTTGAGTCCGTGCGACCTGTCCTGGCTACCTTGGGCCTTGACTGGCCTGC
TTGAATGCCTTCATTTCCTGCTCCTGCGGAGAGGGCCCAGACCCTGCAAA
GCCTTATCGGGTACATCTTCAATGACCCGAATCGTGCGATGGAAGCACTA
GTCGCTGCTGGGGTTCACATGCCCGGATTGATCAATCGCACGGATGGTCA
CAAGCAACTTGCTCTCGTTGGGGATGCCGTTCTCAGAATGATTCTGGCGT
TGGACGGATACGAAGCCCGAAAGGGCAGAG
back to top
Annotated Terms
The following terms have been associated with this mRNA:
Vocabulary: Molecular Function
TermDefinition
GO:0004525ribonuclease III activity
Vocabulary: Biological Process
TermDefinition
GO:0006396RNA processing
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
CBS51388_002471CBS51388_002471Aspergillus niger CBS 513.88gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
CBS51388_002471-T1CBS51388_002471-T1-proteinAspergillus niger CBS 513.88polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CBS51388_002471-T1.cdsCBS51388_002471-T1.cdsAspergillus niger CBS 513.88CDS


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CBS51388_002471-T1.exon2CBS51388_002471-T1.exon2Aspergillus niger CBS 513.88exon
CBS51388_002471-T1.exon1CBS51388_002471-T1.exon1Aspergillus niger CBS 513.88exon


Properties
Property NameValue
NoteantiSMASH:Cluster_3.3
DBxrefInterPro:IPR036389
DBxrefInterPro:IPR000999
DBxrefPFAM:PF00636
Producthypothetical protein
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Aspergillus niger CBS 513.88 whole genome analysis2021-11-01
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
An03supercontigAn03:159723..160237 -
Powered by Drupal