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Sequences
The following sequences are available for this feature:
mRNA from alignment at An04:1645830..1646418- Legend: polypeptideCDSexon Hold the cursor over a type above to highlight its positions in the sequence below. >CBS51388_003480-T1 ID=CBS51388_003480-T1|Name=CBS51388_003480-T1|organism=Aspergillus niger CBS 513.88|type=mRNA|length=589bp|location=Sequence derived from alignment at An04:1645830..1646418- (Aspergillus niger CBS 513.88)
ATGGGCAAGTTGACCAGCACGATCGGTATCCCGATCAAGCTTCTTAATGA
GGCGCAGGTTAGTCTATCCTTCATCCTAAGCTATTGCTTGTATCTATGTA
TTGCGATTAAGCTAACGCGGGATTCTGCATAGGGCCACGTCGTCACACTC
GAGATCACGTCCGGGGTTGTCTACCGTGGAAAACTCCTAGAGGGTGCGTT
GCTTCACCCCTCCTCAACACCTATCCATCCTCTCCAATACACCAATGTCA
AATATTCTCGTCACTAACATCCTCTGCTATAGCTGAGGACAACATGAACG
TCCAACTGAAGGATATCACGGTCACCGCGCGCGACGGCCGCGTGTCACAT
CTCGACCAGGTGTACATTCGGGGAAGCCATGTGAAGTTTTTCATTGTGCC
GGATATGCTTAGGTCGGTTGCCACCCACCTTAATTTTCTACATATTTATC
AGGGATATGGGGCAATGCTAACTAGTATGGTTATAGAAACGCTCCCATGT
TCCGCTCACGAGGCCAGCGCGGTCGCGGTGTCGGTCTTGCTCGTGGTAAG
GCCACGGTGCAGAGGGCGAGGGGACAGAGACGGGGTTGA back to topCoding sequence (CDS) from alignment at An04:1645830..1646418- >CBS51388_003480-T1 ID=CBS51388_003480-T1|Name=CBS51388_003480-T1|organism=Aspergillus niger CBS 513.88|type=CDS|length=1404bp|location=Sequence derived from alignment at An04:1645830..1646418- (Aspergillus niger CBS 513.88)
AAACGCTCCCATGTTCCGCTCACGAGGCCAGCGCGGTCGCGGTGTCGGTC
TTGCTCGTGGTAAGGCCACGGTGCAGAGGGCGAGGGGACAGAGACGGGGT
TGACTGAGGACAACATGAACGTCCAACTGAAGGATATCACGGTCACCGCG
CGCGACGGCCGCGTGTCACATCTCGACCAGGTGTACATTCGGGGAAGCCA
TGTGAAGTTTTTCATTGTGCCGGATATGCTTAGGGCCACGTCGTCACACT
CGAGATCACGTCCGGGGTTGTCTACCGTGGAAAACTCCTAGAGGATGGGC
AAGTTGACCAGCACGATCGGTATCCCGATCAAGCTTCTTAATGAGGCGCA
GAAACGCTCCCATGTTCCGCTCACGAGGCCAGCGCGGTCGCGGTGTCGGT
CTTGCTCGTGGTAAGGCCACGGTGCAGAGGGCGAGGGGACAGAGACGGGG
TTGACTGAGGACAACATGAACGTCCAACTGAAGGATATCACGGTCACCGC
GCGCGACGGCCGCGTGTCACATCTCGACCAGGTGTACATTCGGGGAAGCC
ATGTGAAGTTTTTCATTGTGCCGGATATGCTTAGGGCCACGTCGTCACAC
TCGAGATCACGTCCGGGGTTGTCTACCGTGGAAAACTCCTAGAGGATGGG
CAAGTTGACCAGCACGATCGGTATCCCGATCAAGCTTCTTAATGAGGCGC
AGAAACGCTCCCATGTTCCGCTCACGAGGCCAGCGCGGTCGCGGTGTCGG
TCTTGCTCGTGGTAAGGCCACGGTGCAGAGGGCGAGGGGACAGAGACGGG
GTTGACTGAGGACAACATGAACGTCCAACTGAAGGATATCACGGTCACCG
CGCGCGACGGCCGCGTGTCACATCTCGACCAGGTGTACATTCGGGGAAGC
CATGTGAAGTTTTTCATTGTGCCGGATATGCTTAGGGCCACGTCGTCACA
CTCGAGATCACGTCCGGGGTTGTCTACCGTGGAAAACTCCTAGAGGATGG
GCAAGTTGACCAGCACGATCGGTATCCCGATCAAGCTTCTTAATGAGGCG
CAGAAACGCTCCCATGTTCCGCTCACGAGGCCAGCGCGGTCGCGGTGTCG
GTCTTGCTCGTGGTAAGGCCACGGTGCAGAGGGCGAGGGGACAGAGACGG
GGTTGACTGAGGACAACATGAACGTCCAACTGAAGGATATCACGGTCACC
GCGCGCGACGGCCGCGTGTCACATCTCGACCAGGTGTACATTCGGGGAAG
CCATGTGAAGTTTTTCATTGTGCCGGATATGCTTAGGGCCACGTCGTCAC
ACTCGAGATCACGTCCGGGGTTGTCTACCGTGGAAAACTCCTAGAGGATG
GGCAAGTTGACCAGCACGATCGGTATCCCGATCAAGCTTCTTAATGAGGC
GCAG back to top
Annotated Terms
The following terms have been associated with this mRNA:
Vocabulary: Cellular Component
| Term | Definition |
|---|
| GO:0005681 | spliceosomal complex |
Vocabulary: Biological Process
| Term | Definition |
|---|
| GO:0000387 | spliceosomal snRNP assembly |
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following exon feature(s) are a part of this mRNA:
Properties
| Property Name | Value |
|---|
| DBxref | InterPro:IPR010920 |
| DBxref | InterPro:IPR034099 |
| DBxref | InterPro:IPR001163 |
| DBxref | PFAM:PF01423 |
| Product | small nuclear ribonucleoprotein Sm D3 |
Analyses
This mRNA is derived from or has results from the following analyses
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| An04 | supercontig | An04:1645830..1646418 - |
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