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Sequences
The following sequences are available for this feature:
mRNA from alignment at An08:201557..202373+ Legend: exonpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >CBS51388_005017-T1 ID=CBS51388_005017-T1|Name=CBS51388_005017-T1|organism=Aspergillus niger CBS 513.88|type=mRNA|length=817bp|location=Sequence derived from alignment at An08:201557..202373+ (Aspergillus niger CBS 513.88)
ATGACTTCCCGCCTGGTTCTGGTCATTGGTGACCTCTTCATCCCCGACAG
AGCCCCCGTACGCATCCCCTCATCCCTTATCGCATCCTCGCAGGTTGACC
TGTCTGCTGACTTGTACTCGCTAGGACCTCCCAGCCAAGGTGCGCACTAT
TGCTCCATCCCTCTTGATCCTCCTCTCTGTCTTTCAATCCCCCGTTCTCG
ATTGACCCGCGCACAGTTCCGGAAACTCCTGACGCCAGGCAAGATCGGCC
AGATCCTCTGTCTCGGCAATCTCACCGATCGGAGCACTTTCGAATTCCTC
CGACAGGTCGCTCCAGACTTGCAATTGGTCAAAGGCGACTTCGATGTCGA
TTCCCCCAACCTACCCCTCTCTAAAGTGGTGACTCACGGGAGTCTCCGCA
TCGGATTTACTCATGGCCACACCATCATCCCGCCGGGGGACGCCGATGCC
CTTCTGATCGCTGCCCGCCAGATGGATGTTGACATACTGCTATGGGGTGG
AACCCACCGCTTTGAAGCTTTTGAACTGGAGGGAAGGTTCTTTATCAACC
CGGGAAGTGCCACCGGTGCCATGAGCACGGGGTACTGGCCGGAAGGGGAA
GAGCCGACACCTAGTTTCTGTTTGATGGATGTAAGTCGCGCAACTCCACG
GGGTTCGCTGCAAGACTCGGTACGTGCTCTATGCTAACACAGGATTATAG
ATCCAAGGCGATGTCCTCGTGTTGTATGTTTACCAACTGAAGACGGACGC
CGACGGGGCTGAGACGGTCGCGGTCGAGAAAGTATCTTACCGCAAGAACA
ATATCCCTTCTTCATGA back to topCoding sequence (CDS) from alignment at An08:201557..202373+ >CBS51388_005017-T1 ID=CBS51388_005017-T1|Name=CBS51388_005017-T1|organism=Aspergillus niger CBS 513.88|type=CDS|length=1764bp|location=Sequence derived from alignment at An08:201557..202373+ (Aspergillus niger CBS 513.88)
ATGACTTCCCGCCTGGTTCTGGTCATTGGTGACCTCTTCATCCCCGACAG
AGCCCCCTTCCGGAAACTCCTGACGCCAGGCAAGATCGGCCAGATCCTCT
GTCTCGGCAATCTCACCGATCGGAGCACTTTCGAATTCCTCCGACAGGTC
GCTCCAGACTTGCAATTGGTCAAAGGCGACTTCGATGTCGATTCCCCCAA
CCTACCCCTCTCTAAAGTGGTGACTCACGGGAGTCTCCGCATCGGATTTA
CTCATGGCCACACCATCATCCCGCCGGGGGACGCCGATGCCCTTCTGATC
GCTGCCCGCCAGATGGATGTTGACATACTGCTATGGGGTGGAACCCACCG
CTTTGAAGCTTTTGAACTGGAGGGAAGGTTCTTTATCAACCCGGGAAGTG
CCACCGGTGCCATGAGCACGGGGTACTGGCCGGAAGGGGAAGAGCCGACA
CCTAGTTTCTGTTTGATGGATATCCAAGGCGATGTCCTCGTGTTGTATGT
TTACCAACTGAAGACGGACGCCGACGGGGCTGAGACGGTCGCGGTCGAGA
AAGTATCTTACCGCAAGAACAATATCCCTTCTTCATGAATGACTTCCCGC
CTGGTTCTGGTCATTGGTGACCTCTTCATCCCCGACAGAGCCCCCTTCCG
GAAACTCCTGACGCCAGGCAAGATCGGCCAGATCCTCTGTCTCGGCAATC
TCACCGATCGGAGCACTTTCGAATTCCTCCGACAGGTCGCTCCAGACTTG
CAATTGGTCAAAGGCGACTTCGATGTCGATTCCCCCAACCTACCCCTCTC
TAAAGTGGTGACTCACGGGAGTCTCCGCATCGGATTTACTCATGGCCACA
CCATCATCCCGCCGGGGGACGCCGATGCCCTTCTGATCGCTGCCCGCCAG
ATGGATGTTGACATACTGCTATGGGGTGGAACCCACCGCTTTGAAGCTTT
TGAACTGGAGGGAAGGTTCTTTATCAACCCGGGAAGTGCCACCGGTGCCA
TGAGCACGGGGTACTGGCCGGAAGGGGAAGAGCCGACACCTAGTTTCTGT
TTGATGGATATCCAAGGCGATGTCCTCGTGTTGTATGTTTACCAACTGAA
GACGGACGCCGACGGGGCTGAGACGGTCGCGGTCGAGAAAGTATCTTACC
GCAAGAACAATATCCCTTCTTCATGAATGACTTCCCGCCTGGTTCTGGTC
ATTGGTGACCTCTTCATCCCCGACAGAGCCCCCTTCCGGAAACTCCTGAC
GCCAGGCAAGATCGGCCAGATCCTCTGTCTCGGCAATCTCACCGATCGGA
GCACTTTCGAATTCCTCCGACAGGTCGCTCCAGACTTGCAATTGGTCAAA
GGCGACTTCGATGTCGATTCCCCCAACCTACCCCTCTCTAAAGTGGTGAC
TCACGGGAGTCTCCGCATCGGATTTACTCATGGCCACACCATCATCCCGC
CGGGGGACGCCGATGCCCTTCTGATCGCTGCCCGCCAGATGGATGTTGAC
ATACTGCTATGGGGTGGAACCCACCGCTTTGAAGCTTTTGAACTGGAGGG
AAGGTTCTTTATCAACCCGGGAAGTGCCACCGGTGCCATGAGCACGGGGT
ACTGGCCGGAAGGGGAAGAGCCGACACCTAGTTTCTGTTTGATGGATATC
CAAGGCGATGTCCTCGTGTTGTATGTTTACCAACTGAAGACGGACGCCGA
CGGGGCTGAGACGGTCGCGGTCGAGAAAGTATCTTACCGCAAGAACAATA
TCCCTTCTTCATGA back to top
Annotated Terms
The following terms have been associated with this mRNA:
Vocabulary: Cellular Component
| Term | Definition |
|---|
| GO:0030904 | retromer complex |
Vocabulary: Biological Process
| Term | Definition |
|---|
| GO:0042147 | retrograde transport, endosome to Golgi |
Relationships
This mRNA is a part of the following gene feature(s):
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Properties
| Property Name | Value |
|---|
| Note | BUSCO:EOG092640ZF |
| DBxref | InterPro:IPR028661 |
| DBxref | InterPro:IPR024654 |
| DBxref | InterPro:IPR000979 |
| DBxref | InterPro:IPR029052 |
| DBxref | PFAM:PF12850 |
| Product | hypothetical protein |
Analyses
This mRNA is derived from or has results from the following analyses
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| An08 | supercontig | An08:201557..202373 + |
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