You are here

Home

CBS51388_006367-T1, CBS51388_006367-T1 (mRNA) Aspergillus niger CBS 513.88

Overview
NameCBS51388_006367-T1
Unique NameCBS51388_006367-T1
TypemRNA
OrganismAspergillus niger CBS 513.88
Sequences
The following sequences are available for this feature:

mRNA from alignment at An09:1435261..1436914+

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>CBS51388_006367-T1 ID=CBS51388_006367-T1|Name=CBS51388_006367-T1|organism=Aspergillus niger CBS 513.88|type=mRNA|length=1654bp|location=Sequence derived from alignment at An09:1435261..1436914+ (Aspergillus niger CBS 513.88)
ATGGTCCTTCAGGATCTCGGGCGGCGAATCAACGCCGCCGTCAATGACCT
GACTCGCTCTAACAATTTGGACGAGAAGGTGAGGATCAGCACTTTTCTCT
CTGTCTGATGTATGTACTGACTGTTAGCAGGCCTTTGATGACATGATCAA
AGAGATCTGCGCCGCCTTGCTGTCCGCCGACGTCAACGTCCGCCTGGTCC
AGTCCCTCCGCAAATCCATCAAGTCCAGCGTCAACTTTGCCTCTCTTCCT
CCCGCCGTGAACAAGAAGCGTTTGATTCAGAAGGCCGTCTTCGATGAGCT
GGTTTCCCTGGTTGATCCCCATGCGGAGCCATTCCGTCCCAAGAAGGGCC
GCTCCAACGTGATCATGTTCGTCGGTCTACAGGGTGCCGGTAAAACCACC
ACCTGTACCAAGCTGGCCCGCCACTATCAGATGCGCGGCTTCAAGACCGC
CCTCGTCTGTGCCGATACCTTCCGAGCTGGTGCTTTCGACCAGCTGAAAC
AGAATGCCACCAAGGCCAAGATCCCCTACTACGGTAGCCTGACGCAAACC
GACCCCGCCATCGTGGCAGCCGAGGGTGTGGCCAAGTTCAAGAAGGAGCG
TTTCGAAATCATCATTGTCGATACCAGTGGTCGTCATAAGCAGGAAGAAG
AGCTCTTCACCGAAATGACCCAGATTCAGACCGCCGTCACCCCCGACCAG
ACCATCCTCGTCCTCGACAGCACCATCGGTCAGGCTGCCGAAGCCCAGTC
CTCCGCCTTCAAGGCCACCGCAGACTTCGGAGCCATCATCATCACCAAGA
CGGATGGTCACGCCGCAGGTGGTGGTGCTATTTCCGCCGTCGCCGCCACA
CACACTCCCATTATCTACCTCGGTACCGGTGAGCACTTGATGGACCTGGA
ACGTTTCGAGCCCAAGGCCTTCATCCAGAAGCTCCTGGGTATGGGTGATA
TGGCCGGACTGGTAGAGCACGTACAAGCCGTGACCAAGGACTCGGCCTCC
GCCAAGGAAACATACAAGCACATCTCAGAAGGTATCTACACGCTGCGCGA
CTTCCGCGAGAACATCACCTCCATCATGAAGATGGGTCCTCTCTCCAAGC
TCTCCGGCATGATTCCCGGTCTCTCCAACCTGACCGCGGGACTTGATGAC
GAAGACGGCTCCATGAAGCTCCGCCGCATGATCTACATTTTCGACAGCAT
GACGGCCGCCGAACTCGACGGCGACGGCAAGATGTTCGTCGAACAGCCTA
GCCGCATGGTCCGGATCGCTTGCGGAAGCGGTACCACCGTCCGCGAAGTC
GAAGACCTGCTCTCCCAGCACCGCATGATGGCTGGTATGGCCAAGCGCGT
CGGCGGACAGAAGAAGCAGATGCAGCGTGCCCAGAACATGCTCAAGGGCG
GTAACAAGGAACAGCAGCTCGCCGCCATGCAGAAGCGCATGGCCGCCATG
GGTGGTGCTGGCGGTGGTGGATTCCCCGGTATGCCCGGCATGGGCGACAT
GGCCAAGATGATGCAAATGCTGCAAGGTCAAGGAGGTGGCGGCGGTGGTG
GTCTTCCCGGCCTGGGTGGGATGGACCTACAAAGTATGATGAGCCAGATG
AGTGGATTGATGGGCGGTGGCGGTGGTGGTGGTGGCCGCGGTAGAGGACG
GTGA
back to top

Coding sequence (CDS) from alignment at An09:1435261..1436914+

>CBS51388_006367-T1 ID=CBS51388_006367-T1|Name=CBS51388_006367-T1|organism=Aspergillus niger CBS 513.88|type=CDS|length=3204bp|location=Sequence derived from alignment at An09:1435261..1436914+ (Aspergillus niger CBS 513.88)
ATGGTCCTTCAGGATCTCGGGCGGCGAATCAACGCCGCCGTCAATGACCT
GACTCGCTCTAACAATTTGGACGAGAAGGCCTTTGATGACATGATCAAAG
AGATCTGCGCCGCCTTGCTGTCCGCCGACGTCAACGTCCGCCTGGTCCAG
TCCCTCCGCAAATCCATCAAGTCCAGCGTCAACTTTGCCTCTCTTCCTCC
CGCCGTGAACAAGAAGCGTTTGATTCAGAAGGCCGTCTTCGATGAGCTGG
TTTCCCTGGTTGATCCCCATGCGGAGCCATTCCGTCCCAAGAAGGGCCGC
TCCAACGTGATCATGTTCGTCGGTCTACAGGGTGCCGGTAAAACCACCAC
CTGTACCAAGCTGGCCCGCCACTATCAGATGCGCGGCTTCAAGACCGCCC
TCGTCTGTGCCGATACCTTCCGAGCTGGTGCTTTCGACCAGCTGAAACAG
AATGCCACCAAGGCCAAGATCCCCTACTACGGTAGCCTGACGCAAACCGA
CCCCGCCATCGTGGCAGCCGAGGGTGTGGCCAAGTTCAAGAAGGAGCGTT
TCGAAATCATCATTGTCGATACCAGTGGTCGTCATAAGCAGGAAGAAGAG
CTCTTCACCGAAATGACCCAGATTCAGACCGCCGTCACCCCCGACCAGAC
CATCCTCGTCCTCGACAGCACCATCGGTCAGGCTGCCGAAGCCCAGTCCT
CCGCCTTCAAGGCCACCGCAGACTTCGGAGCCATCATCATCACCAAGACG
GATGGTCACGCCGCAGGTGGTGGTGCTATTTCCGCCGTCGCCGCCACACA
CACTCCCATTATCTACCTCGGTACCGGTGAGCACTTGATGGACCTGGAAC
GTTTCGAGCCCAAGGCCTTCATCCAGAAGCTCCTGGGTATGGGTGATATG
GCCGGACTGGTAGAGCACGTACAAGCCGTGACCAAGGACTCGGCCTCCGC
CAAGGAAACATACAAGCACATCTCAGAAGGTATCTACACGCTGCGCGACT
TCCGCGAGAACATCACCTCCATCATGAAGATGGGTCCTCTCTCCAAGCTC
TCCGGCATGATTCCCGGTCTCTCCAACCTGACCGCGGGACTTGATGACGA
AGACGGCTCCATGAAGCTCCGCCGCATGATCTACATTTTCGACAGCATGA
CGGCCGCCGAACTCGACGGCGACGGCAAGATGTTCGTCGAACAGCCTAGC
CGCATGGTCCGGATCGCTTGCGGAAGCGGTACCACCGTCCGCGAAGTCGA
AGACCTGCTCTCCCAGCACCGCATGATGGCTGGTATGGCCAAGCGCGTCG
GCGGACAGAAGAAGCAGATGCAGCGTGCCCAGAACATGCTCAAGGGCGGT
AACAAGGAACAGCAGCTCGCCGCCATGCAGAAGCGCATGGCCGCCATGGG
TGGTGCTGGCGGTGGTGGATTCCCCGGTATGCCCGGCATGGGCGACATGG
CCAAGATGATGCAAATGCTGCAAGGTCAAGGAGGTGGCGGCGGTGGTGGT
CTTCCCGGCCTGGGTGGGATGGACCTACAAAGTATGATGAGCCAGATGAG
TGGATTGATGGGCGGTGGCGGTGGTGGTGGTGGCCGCGGTAGAGGACGGT
GAATGGTCCTTCAGGATCTCGGGCGGCGAATCAACGCCGCCGTCAATGAC
CTGACTCGCTCTAACAATTTGGACGAGAAGGCCTTTGATGACATGATCAA
AGAGATCTGCGCCGCCTTGCTGTCCGCCGACGTCAACGTCCGCCTGGTCC
AGTCCCTCCGCAAATCCATCAAGTCCAGCGTCAACTTTGCCTCTCTTCCT
CCCGCCGTGAACAAGAAGCGTTTGATTCAGAAGGCCGTCTTCGATGAGCT
GGTTTCCCTGGTTGATCCCCATGCGGAGCCATTCCGTCCCAAGAAGGGCC
GCTCCAACGTGATCATGTTCGTCGGTCTACAGGGTGCCGGTAAAACCACC
ACCTGTACCAAGCTGGCCCGCCACTATCAGATGCGCGGCTTCAAGACCGC
CCTCGTCTGTGCCGATACCTTCCGAGCTGGTGCTTTCGACCAGCTGAAAC
AGAATGCCACCAAGGCCAAGATCCCCTACTACGGTAGCCTGACGCAAACC
GACCCCGCCATCGTGGCAGCCGAGGGTGTGGCCAAGTTCAAGAAGGAGCG
TTTCGAAATCATCATTGTCGATACCAGTGGTCGTCATAAGCAGGAAGAAG
AGCTCTTCACCGAAATGACCCAGATTCAGACCGCCGTCACCCCCGACCAG
ACCATCCTCGTCCTCGACAGCACCATCGGTCAGGCTGCCGAAGCCCAGTC
CTCCGCCTTCAAGGCCACCGCAGACTTCGGAGCCATCATCATCACCAAGA
CGGATGGTCACGCCGCAGGTGGTGGTGCTATTTCCGCCGTCGCCGCCACA
CACACTCCCATTATCTACCTCGGTACCGGTGAGCACTTGATGGACCTGGA
ACGTTTCGAGCCCAAGGCCTTCATCCAGAAGCTCCTGGGTATGGGTGATA
TGGCCGGACTGGTAGAGCACGTACAAGCCGTGACCAAGGACTCGGCCTCC
GCCAAGGAAACATACAAGCACATCTCAGAAGGTATCTACACGCTGCGCGA
CTTCCGCGAGAACATCACCTCCATCATGAAGATGGGTCCTCTCTCCAAGC
TCTCCGGCATGATTCCCGGTCTCTCCAACCTGACCGCGGGACTTGATGAC
GAAGACGGCTCCATGAAGCTCCGCCGCATGATCTACATTTTCGACAGCAT
GACGGCCGCCGAACTCGACGGCGACGGCAAGATGTTCGTCGAACAGCCTA
GCCGCATGGTCCGGATCGCTTGCGGAAGCGGTACCACCGTCCGCGAAGTC
GAAGACCTGCTCTCCCAGCACCGCATGATGGCTGGTATGGCCAAGCGCGT
CGGCGGACAGAAGAAGCAGATGCAGCGTGCCCAGAACATGCTCAAGGGCG
GTAACAAGGAACAGCAGCTCGCCGCCATGCAGAAGCGCATGGCCGCCATG
GGTGGTGCTGGCGGTGGTGGATTCCCCGGTATGCCCGGCATGGGCGACAT
GGCCAAGATGATGCAAATGCTGCAAGGTCAAGGAGGTGGCGGCGGTGGTG
GTCTTCCCGGCCTGGGTGGGATGGACCTACAAAGTATGATGAGCCAGATG
AGTGGATTGATGGGCGGTGGCGGTGGTGGTGGTGGCCGCGGTAGAGGACG
GTGA
back to top
Annotated Terms
The following terms have been associated with this mRNA:
Vocabulary: Cellular Component
TermDefinition
GO:0048500signal recognition particle
Vocabulary: Biological Process
TermDefinition
GO:0006614SRP-dependent cotranslational protein targeting to membrane
Vocabulary: Molecular Function
TermDefinition
GO:0003924GTPase activity
GO:00083127S RNA binding
GO:0005525GTP binding
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
CBS51388_006367CBS51388_006367Aspergillus niger CBS 513.88gene


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CBS51388_006367-T1.exon1CBS51388_006367-T1.exon1Aspergillus niger CBS 513.88exon
CBS51388_006367-T1.exon2CBS51388_006367-T1.exon2Aspergillus niger CBS 513.88exon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CBS51388_006367-T1.cdsCBS51388_006367-T1.cdsAspergillus niger CBS 513.88CDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
CBS51388_006367-T1CBS51388_006367-T1-proteinAspergillus niger CBS 513.88polypeptide


Properties
Property NameValue
NoteBUSCO:EOG09261V9P
DBxrefInterPro:IPR027417
DBxrefInterPro:IPR036225
DBxrefInterPro:IPR022941
DBxrefInterPro:IPR006325
DBxrefInterPro:IPR004125
DBxrefInterPro:IPR036891
DBxrefInterPro:IPR042101
DBxrefInterPro:IPR003593
DBxrefInterPro:IPR000897
DBxrefInterPro:IPR013822
DBxrefPFAM:PF02978
DBxrefPFAM:PF02881
DBxrefPFAM:PF00448
DBxrefPFAM:PF02492
Producthypothetical protein
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Aspergillus niger CBS 513.88 whole genome analysis2021-11-01
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
An09supercontigAn09:1435261..1436914 +
Powered by Drupal