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Sequences
The following sequences are available for this feature:
mRNA from alignment at MCQH01000066:835498..836086+ Legend: exonpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >ATCC10864_003333-T1 ID=ATCC10864_003333-T1|Name=ATCC10864_003333-T1|organism=Aspergillus niger ATCC 10864|type=mRNA|length=589bp|location=Sequence derived from alignment at MCQH01000066:835498..836086+ (Aspergillus niger ATCC 10864)
ATGGGCAAGTTGACCAGCACGATCGGTATCCCGATCAAGCTTCTTAATGA
GGCGCAGGTTAGTCTATCCTTCATCCTAAGCTATTGCTTGTATCTATGTA
TTGCGATTAAGCTAACGCGGGATTCTGCATAGGGCCACGTCGTCACACTC
GAGATCACGTCCGGGGTTGTCTACCGTGGAAAACTCCTAGAGGGTGCGTT
GCTTCACCCCTCCTCAACACCTATCCATCCTCTCCAATACACCAATGTCA
AATATTCTCGTCACTAACATCCTCTGCTATAGCTGAGGACAACATGAACG
TCCAACTGAAGGATATCACGGTCACCGCGCGCGACGGCCGCGTGTCACAT
CTCGACCAGGTGTACATTCGGGGAAGCCATGTGAAGTTTTTCATTGTGCC
GGATATGCTTAGGTCGGTTGCCACCCACCTTAATTTTCTACATATTTATC
AGGGATATGGGGCAATGCTAACTAGTATGGTTATAGAAACGCTCCCATGT
TCCGCTCACGAGGCCAGCGCGGTCGCGGTGTCGGTCTTGCTCGTGGTAAG
GCCACGGTGCAGAGGGCGAGGGGACAGAGACGGGGTTGA back to topCoding sequence (CDS) from alignment at MCQH01000066:835498..836086+ >ATCC10864_003333-T1 ID=ATCC10864_003333-T1|Name=ATCC10864_003333-T1|organism=Aspergillus niger ATCC 10864|type=CDS|length=1404bp|location=Sequence derived from alignment at MCQH01000066:835498..836086+ (Aspergillus niger ATCC 10864)
ATGGGCAAGTTGACCAGCACGATCGGTATCCCGATCAAGCTTCTTAATGA
GGCGCAGGGCCACGTCGTCACACTCGAGATCACGTCCGGGGTTGTCTACC
GTGGAAAACTCCTAGAGGCTGAGGACAACATGAACGTCCAACTGAAGGAT
ATCACGGTCACCGCGCGCGACGGCCGCGTGTCACATCTCGACCAGGTGTA
CATTCGGGGAAGCCATGTGAAGTTTTTCATTGTGCCGGATATGCTTAGAA
ACGCTCCCATGTTCCGCTCACGAGGCCAGCGCGGTCGCGGTGTCGGTCTT
GCTCGTGGTAAGGCCACGGTGCAGAGGGCGAGGGGACAGAGACGGGGTTG
AATGGGCAAGTTGACCAGCACGATCGGTATCCCGATCAAGCTTCTTAATG
AGGCGCAGGGCCACGTCGTCACACTCGAGATCACGTCCGGGGTTGTCTAC
CGTGGAAAACTCCTAGAGGCTGAGGACAACATGAACGTCCAACTGAAGGA
TATCACGGTCACCGCGCGCGACGGCCGCGTGTCACATCTCGACCAGGTGT
ACATTCGGGGAAGCCATGTGAAGTTTTTCATTGTGCCGGATATGCTTAGA
AACGCTCCCATGTTCCGCTCACGAGGCCAGCGCGGTCGCGGTGTCGGTCT
TGCTCGTGGTAAGGCCACGGTGCAGAGGGCGAGGGGACAGAGACGGGGTT
GAATGGGCAAGTTGACCAGCACGATCGGTATCCCGATCAAGCTTCTTAAT
GAGGCGCAGGGCCACGTCGTCACACTCGAGATCACGTCCGGGGTTGTCTA
CCGTGGAAAACTCCTAGAGGCTGAGGACAACATGAACGTCCAACTGAAGG
ATATCACGGTCACCGCGCGCGACGGCCGCGTGTCACATCTCGACCAGGTG
TACATTCGGGGAAGCCATGTGAAGTTTTTCATTGTGCCGGATATGCTTAG
AAACGCTCCCATGTTCCGCTCACGAGGCCAGCGCGGTCGCGGTGTCGGTC
TTGCTCGTGGTAAGGCCACGGTGCAGAGGGCGAGGGGACAGAGACGGGGT
TGAATGGGCAAGTTGACCAGCACGATCGGTATCCCGATCAAGCTTCTTAA
TGAGGCGCAGGGCCACGTCGTCACACTCGAGATCACGTCCGGGGTTGTCT
ACCGTGGAAAACTCCTAGAGGCTGAGGACAACATGAACGTCCAACTGAAG
GATATCACGGTCACCGCGCGCGACGGCCGCGTGTCACATCTCGACCAGGT
GTACATTCGGGGAAGCCATGTGAAGTTTTTCATTGTGCCGGATATGCTTA
GAAACGCTCCCATGTTCCGCTCACGAGGCCAGCGCGGTCGCGGTGTCGGT
CTTGCTCGTGGTAAGGCCACGGTGCAGAGGGCGAGGGGACAGAGACGGGG
TTGA back to top
Annotated Terms
The following terms have been associated with this mRNA:
Vocabulary: Cellular Component
| Term | Definition |
|---|
| GO:0005681 | spliceosomal complex |
Vocabulary: Biological Process
| Term | Definition |
|---|
| GO:0006396 | RNA processing |
| GO:0000387 | spliceosomal snRNP assembly |
Relationships
This mRNA is a part of the following gene feature(s):
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Cross References
External references for this mRNA
| Database | Accession |
|---|
| InterPro | IPR034099 |
| InterPro | IPR010920 |
| InterPro | IPR001163 |
| PFAM | PF01423 |
| InterPro | IPR027141 |
Properties
| Property Name | Value |
|---|
| Product | small nuclear ribonucleoprotein Sm D3 |
Analyses
This mRNA is derived from or has results from the following analyses
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| MCQH01000066 | supercontig | MCQH01000066:835498..836086 + |
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