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ATCC10864_004973-T1, ATCC10864_004973-T1 (mRNA) Aspergillus niger ATCC 10864

Overview
NameATCC10864_004973-T1
Unique NameATCC10864_004973-T1
TypemRNA
OrganismAspergillus niger ATCC 10864
Sequences
The following sequences are available for this feature:

mRNA from alignment at MCQH01000131:6079..7597+

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>ATCC10864_004973-T1 ID=ATCC10864_004973-T1|Name=ATCC10864_004973-T1|organism=Aspergillus niger ATCC 10864|type=mRNA|length=1519bp|location=Sequence derived from alignment at MCQH01000131:6079..7597+ (Aspergillus niger ATCC 10864)
ATGGTCGATTCCGATGAAGAGTACATAGGAGAAATCTCTGAGGATGAGGA
TGAAAACAATCTTCTACCAGGGTCTCGCGGAGAGACTACGTCCGCATCCC
GGTCCAAGAGGAGAAAGCACCGTGGAGGCGCAGAATGGGAGGTCTCGAGA
ACATGGGAAACCTTAGTTGAAGGTGCCGACGGTACAATCAGCTCTACAGT
TGAAGGGCTTCTCGAGGCTGGGAAAAGGAAAAGGTAGGGTGTACTTTCAA
GCCGAGTTAGTCTCAGTTTTGATAACGGTTCGAGCTGAGTTCCATGTCTT
CGCGCTTGCAGGCTCCTCAGAGATACGACTCCTTTACAACGGGGTATAAT
CCGTCATCTCATCTTGATTATAGATCTGTCACAATCTATGACCGAGAAAG
ATCTCCGACCGACACGTTACTTATTGTCCTTACGGTATGCACAAGAGTTC
GTGAGGGAATTTTTCGAGCAAAATCCCATCTCTCAACTCGGCGTTCTTGG
CCTCAAAGATGGACTGGCGGTCAGAGTCAGTGATATGAGTGGAAACCCTA
CTGAGCATATTAGTGCCATCCAATCACTGCGAGACCAGGATCCGAAAGGT
CTTCCTAGTCTGCAAAATGGCTTCGAAATGGCTCGTGGTGCCTTGTTGTA
TGTCTTTTCCACGGTAGCGTCGTACACACTCAATGATAAGGTGGACTAAT
TTGTCTTGCAACAGCCATACTCCAAGCCATGGCACCCGTGAGATCTTCGT
CATTTTTGGCTCCCTCCTTTCCTCTGATCCCGGTGATATTCACCAAACAA
TTACTACGCTTATAAATGATAAAATACGTGTTGGAATCGTGGGCCTTGCT
GCTCAAGTGGCAATCTGTCGCGAAATTTGTGGCAAGACTAACGGGGGCGA
CGATACCACATACGGTGTAGCACTCAATGAACAACATTTCCGTGACCTTG
TGATGAATGTGACAACACCACCAGCCACATACTCTCAGAAGCAGTCCACA
AGCTCTCTCTTGATGATGGGTTTTCCATCACGAACCGTTGAGGCTTACCC
TTCACTTTGTGCATGCCATTCCAAGCCTTCTCGTGGGGGCTATCTGTGCT
CACGGTGCAACAGCAAGGTTTGTGGTCTCCCTGCCGAGTGTCCTTCCTGT
GGTCTTACTTTGATTCTTTCAACCCATCTTGCTCGGTCGTATCACCATCT
GTTTCCCCTTATGAACTGGGTGGAAGTTTCGTGGCAACACGCTTCACGCA
GTAGTGTCTGTTTCGCTTGTGGGATATCCTTTCCATCAGTACCACCCAAG
GAGCAGTGGCATACTACAGAGGGACAAACAAAGGGAATAAGCGTAAGCAG
CCGCTATGAATGTACTGTTTGCAGAAACCATTTTTGCATTGACTGTGACC
TTTTCGCTCATGAGGTTGTGCACAACTGCCCTGGCTGCCAAAGCAAGATG
ATAGTTGCCACGAGTTCTGAGCCCTCTCAGGACCACGAAGCTCTAGACAG
GATGGATACCTCTGCATGA
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Coding sequence (CDS) from alignment at MCQH01000131:6079..7597+

>ATCC10864_004973-T1 ID=ATCC10864_004973-T1|Name=ATCC10864_004973-T1|organism=Aspergillus niger ATCC 10864|type=CDS|length=4122bp|location=Sequence derived from alignment at MCQH01000131:6079..7597+ (Aspergillus niger ATCC 10864)
ATGGTCGATTCCGATGAAGAGTACATAGGAGAAATCTCTGAGGATGAGGA
TGAAAACAATCTTCTACCAGGGTCTCGCGGAGAGACTACGTCCGCATCCC
GGTCCAAGAGGAGAAAGCACCGTGGAGGCGCAGAATGGGAGGTCTCGAGA
ACATGGGAAACCTTAGTTGAAGGTGCCGACGGTACAATCAGCTCTACAGT
TGAAGGGCTTCTCGAGGCTGGGAAAAGGAAAAGGCTCCTCAGAGATACGA
CTCCTTTACAACGGGGTATAATCCGTCATCTCATCTTGATTATAGATCTG
TCACAATCTATGACCGAGAAAGATCTCCGACCGACACGTTACTTATTGTC
CTTACGGTATGCACAAGAGTTCGTGAGGGAATTTTTCGAGCAAAATCCCA
TCTCTCAACTCGGCGTTCTTGGCCTCAAAGATGGACTGGCGGTCAGAGTC
AGTGATATGAGTGGAAACCCTACTGAGCATATTAGTGCCATCCAATCACT
GCGAGACCAGGATCCGAAAGGTCTTCCTAGTCTGCAAAATGGCTTCGAAA
TGGCTCGTGGTGCCTTGTTCCATACTCCAAGCCATGGCACCCGTGAGATC
TTCGTCATTTTTGGCTCCCTCCTTTCCTCTGATCCCGGTGATATTCACCA
AACAATTACTACGCTTATAAATGATAAAATACGTGTTGGAATCGTGGGCC
TTGCTGCTCAAGTGGCAATCTGTCGCGAAATTTGTGGCAAGACTAACGGG
GGCGACGATACCACATACGGTGTAGCACTCAATGAACAACATTTCCGTGA
CCTTGTGATGAATGTGACAACACCACCAGCCACATACTCTCAGAAGCAGT
CCACAAGCTCTCTCTTGATGATGGGTTTTCCATCACGAACCGTTGAGGCT
TACCCTTCACTTTGTGCATGCCATTCCAAGCCTTCTCGTGGGGGCTATCT
GTGCTCACGGTGCAACAGCAAGGTTTGTGGTCTCCCTGCCGAGTGTCCTT
CCTGTGGTCTTACTTTGATTCTTTCAACCCATCTTGCTCGGTCGTATCAC
CATCTGTTTCCCCTTATGAACTGGGTGGAAGTTTCGTGGCAACACGCTTC
ACGCAGTAGTGTCTGTTTCGCTTGTGGGATATCCTTTCCATCAGTACCAC
CCAAGGAGCAGTGGCATACTACAGAGGGACAAACAAAGGGAATAAGCGTA
AGCAGCCGCTATGAATGTACTGTTTGCAGAAACCATTTTTGCATTGACTG
TGACCTTTTCGCTCATGAGGTTGTGCACAACTGCCCTGGCTGCCAAAGCA
AGATGATAGTTGCCACGAGTTCTGAGCCCTCTCAGGACCACGAAGCTCTA
GACAGGATGGATACCTCTGCATGAATGGTCGATTCCGATGAAGAGTACAT
AGGAGAAATCTCTGAGGATGAGGATGAAAACAATCTTCTACCAGGGTCTC
GCGGAGAGACTACGTCCGCATCCCGGTCCAAGAGGAGAAAGCACCGTGGA
GGCGCAGAATGGGAGGTCTCGAGAACATGGGAAACCTTAGTTGAAGGTGC
CGACGGTACAATCAGCTCTACAGTTGAAGGGCTTCTCGAGGCTGGGAAAA
GGAAAAGGCTCCTCAGAGATACGACTCCTTTACAACGGGGTATAATCCGT
CATCTCATCTTGATTATAGATCTGTCACAATCTATGACCGAGAAAGATCT
CCGACCGACACGTTACTTATTGTCCTTACGGTATGCACAAGAGTTCGTGA
GGGAATTTTTCGAGCAAAATCCCATCTCTCAACTCGGCGTTCTTGGCCTC
AAAGATGGACTGGCGGTCAGAGTCAGTGATATGAGTGGAAACCCTACTGA
GCATATTAGTGCCATCCAATCACTGCGAGACCAGGATCCGAAAGGTCTTC
CTAGTCTGCAAAATGGCTTCGAAATGGCTCGTGGTGCCTTGTTCCATACT
CCAAGCCATGGCACCCGTGAGATCTTCGTCATTTTTGGCTCCCTCCTTTC
CTCTGATCCCGGTGATATTCACCAAACAATTACTACGCTTATAAATGATA
AAATACGTGTTGGAATCGTGGGCCTTGCTGCTCAAGTGGCAATCTGTCGC
GAAATTTGTGGCAAGACTAACGGGGGCGACGATACCACATACGGTGTAGC
ACTCAATGAACAACATTTCCGTGACCTTGTGATGAATGTGACAACACCAC
CAGCCACATACTCTCAGAAGCAGTCCACAAGCTCTCTCTTGATGATGGGT
TTTCCATCACGAACCGTTGAGGCTTACCCTTCACTTTGTGCATGCCATTC
CAAGCCTTCTCGTGGGGGCTATCTGTGCTCACGGTGCAACAGCAAGGTTT
GTGGTCTCCCTGCCGAGTGTCCTTCCTGTGGTCTTACTTTGATTCTTTCA
ACCCATCTTGCTCGGTCGTATCACCATCTGTTTCCCCTTATGAACTGGGT
GGAAGTTTCGTGGCAACACGCTTCACGCAGTAGTGTCTGTTTCGCTTGTG
GGATATCCTTTCCATCAGTACCACCCAAGGAGCAGTGGCATACTACAGAG
GGACAAACAAAGGGAATAAGCGTAAGCAGCCGCTATGAATGTACTGTTTG
CAGAAACCATTTTTGCATTGACTGTGACCTTTTCGCTCATGAGGTTGTGC
ACAACTGCCCTGGCTGCCAAAGCAAGATGATAGTTGCCACGAGTTCTGAG
CCCTCTCAGGACCACGAAGCTCTAGACAGGATGGATACCTCTGCATGAAT
GGTCGATTCCGATGAAGAGTACATAGGAGAAATCTCTGAGGATGAGGATG
AAAACAATCTTCTACCAGGGTCTCGCGGAGAGACTACGTCCGCATCCCGG
TCCAAGAGGAGAAAGCACCGTGGAGGCGCAGAATGGGAGGTCTCGAGAAC
ATGGGAAACCTTAGTTGAAGGTGCCGACGGTACAATCAGCTCTACAGTTG
AAGGGCTTCTCGAGGCTGGGAAAAGGAAAAGGCTCCTCAGAGATACGACT
CCTTTACAACGGGGTATAATCCGTCATCTCATCTTGATTATAGATCTGTC
ACAATCTATGACCGAGAAAGATCTCCGACCGACACGTTACTTATTGTCCT
TACGGTATGCACAAGAGTTCGTGAGGGAATTTTTCGAGCAAAATCCCATC
TCTCAACTCGGCGTTCTTGGCCTCAAAGATGGACTGGCGGTCAGAGTCAG
TGATATGAGTGGAAACCCTACTGAGCATATTAGTGCCATCCAATCACTGC
GAGACCAGGATCCGAAAGGTCTTCCTAGTCTGCAAAATGGCTTCGAAATG
GCTCGTGGTGCCTTGTTCCATACTCCAAGCCATGGCACCCGTGAGATCTT
CGTCATTTTTGGCTCCCTCCTTTCCTCTGATCCCGGTGATATTCACCAAA
CAATTACTACGCTTATAAATGATAAAATACGTGTTGGAATCGTGGGCCTT
GCTGCTCAAGTGGCAATCTGTCGCGAAATTTGTGGCAAGACTAACGGGGG
CGACGATACCACATACGGTGTAGCACTCAATGAACAACATTTCCGTGACC
TTGTGATGAATGTGACAACACCACCAGCCACATACTCTCAGAAGCAGTCC
ACAAGCTCTCTCTTGATGATGGGTTTTCCATCACGAACCGTTGAGGCTTA
CCCTTCACTTTGTGCATGCCATTCCAAGCCTTCTCGTGGGGGCTATCTGT
GCTCACGGTGCAACAGCAAGGTTTGTGGTCTCCCTGCCGAGTGTCCTTCC
TGTGGTCTTACTTTGATTCTTTCAACCCATCTTGCTCGGTCGTATCACCA
TCTGTTTCCCCTTATGAACTGGGTGGAAGTTTCGTGGCAACACGCTTCAC
GCAGTAGTGTCTGTTTCGCTTGTGGGATATCCTTTCCATCAGTACCACCC
AAGGAGCAGTGGCATACTACAGAGGGACAAACAAAGGGAATAAGCGTAAG
CAGCCGCTATGAATGTACTGTTTGCAGAAACCATTTTTGCATTGACTGTG
ACCTTTTCGCTCATGAGGTTGTGCACAACTGCCCTGGCTGCCAAAGCAAG
ATGATAGTTGCCACGAGTTCTGAGCCCTCTCAGGACCACGAAGCTCTAGA
CAGGATGGATACCTCTGCATGA
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Annotated Terms
The following terms have been associated with this mRNA:
Vocabulary: Cellular Component
TermDefinition
GO:0000439transcription factor TFIIH core complex
Vocabulary: Biological Process
TermDefinition
GO:0006281DNA repair
GO:0006351transcription, DNA-templated
GO:0006289nucleotide-excision repair
Vocabulary: Molecular Function
TermDefinition
GO:0008270zinc ion binding
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
ATCC10864_004973ATCC10864_004973Aspergillus niger ATCC 10864gene


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
ATCC10864_004973-T1.exon1ATCC10864_004973-T1.exon1Aspergillus niger ATCC 10864exon
ATCC10864_004973-T1.exon2ATCC10864_004973-T1.exon2Aspergillus niger ATCC 10864exon
ATCC10864_004973-T1.exon3ATCC10864_004973-T1.exon3Aspergillus niger ATCC 10864exon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
ATCC10864_004973-T1.cdsATCC10864_004973-T1.cdsAspergillus niger ATCC 10864CDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
ATCC10864_004973-T1ATCC10864_004973-T1-proteinAspergillus niger ATCC 10864polypeptide


Cross References
External references for this mRNA
DatabaseAccession
PFAMPF00092
PFAMPF07975
InterProIPR004595
InterProIPR013087
InterProIPR036465
InterProIPR002035
PFAMPF04056
InterProIPR012170
PFAMPF13519
InterProIPR013083
InterProIPR007198
Properties
Property NameValue
NoteBUSCO:EOG09262ILV
Producthypothetical protein
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Aspergillus niger ATCC 10864 whole genome analysis2021-11-01
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
MCQH01000131supercontigMCQH01000131:6079..7597 +
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