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ATCC10864_005704-T1, ATCC10864_005704-T1 (mRNA) Aspergillus niger ATCC 10864

Overview
NameATCC10864_005704-T1
Unique NameATCC10864_005704-T1
TypemRNA
OrganismAspergillus niger ATCC 10864
Sequences
The following sequences are available for this feature:

mRNA from alignment at MCQH01000156:6279..6735-

Legend: polypeptideCDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
>ATCC10864_005704-T1 ID=ATCC10864_005704-T1|Name=ATCC10864_005704-T1|organism=Aspergillus niger ATCC 10864|type=mRNA|length=457bp|location=Sequence derived from alignment at MCQH01000156:6279..6735- (Aspergillus niger ATCC 10864)
ATGGAGAACGGTGCCTCATCTGATGGCAAGGATCCCTCAGCTTTTCTGGG
TGAAATCATTGGCGCCCCAGTTACTGTTAAATTGAACTCAGGCGTTGTCT
ATAAAGGTGAACGATCATATTCTGCTTTGTTCTACCTACCATTTCTGCCA
GTATCGTGTCTTTTTCCCCTGGTACAGGAGAAGGGAACCACTCTTATGGG
GGACAGGAGATAGATACAATCGAAGAACAGGAATATTAAAATGCTAACGA
ACTCTTCAGGGGAACTTCAATCGGTAGATGGCTATATGAATATCGCTCTG
GAGAAATCTGAGGAGTTTGTTAATGGAAAATTGTCCCGCAGTTACGGGGA
TGCCTTCATTCGTGGAAATAATGGTTTGTTGTGTCACACCTAAGGAGATG
AACACGTCTAACTATCTCTCTTCGACTCGCATAGTGCTGTATATATCCGC
GCATTGA
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Coding sequence (CDS) from alignment at MCQH01000156:6279..6735-

>ATCC10864_005704-T1 ID=ATCC10864_005704-T1|Name=ATCC10864_005704-T1|organism=Aspergillus niger ATCC 10864|type=CDS|length=729bp|location=Sequence derived from alignment at MCQH01000156:6279..6735- (Aspergillus niger ATCC 10864)
TGCTGTATATATCCGCGCATTGAGGGAACTTCAATCGGTAGATGGCTATA
TGAATATCGCTCTGGAGAAATCTGAGGAGTTTGTTAATGGAAAATTGTCC
CGCAGTTACGGGGATGCCTTCATTCGTGGAAATAATGATGGAGAACGGTG
CCTCATCTGATGGCAAGGATCCCTCAGCTTTTCTGGGTGAAATCATTGGC
GCCCCAGTTACTGTTAAATTGAACTCAGGCGTTGTCTATAAAGTGCTGTA
TATATCCGCGCATTGAGGGAACTTCAATCGGTAGATGGCTATATGAATAT
CGCTCTGGAGAAATCTGAGGAGTTTGTTAATGGAAAATTGTCCCGCAGTT
ACGGGGATGCCTTCATTCGTGGAAATAATGATGGAGAACGGTGCCTCATC
TGATGGCAAGGATCCCTCAGCTTTTCTGGGTGAAATCATTGGCGCCCCAG
TTACTGTTAAATTGAACTCAGGCGTTGTCTATAAAGTGCTGTATATATCC
GCGCATTGAGGGAACTTCAATCGGTAGATGGCTATATGAATATCGCTCTG
GAGAAATCTGAGGAGTTTGTTAATGGAAAATTGTCCCGCAGTTACGGGGA
TGCCTTCATTCGTGGAAATAATGATGGAGAACGGTGCCTCATCTGATGGC
AAGGATCCCTCAGCTTTTCTGGGTGAAATCATTGGCGCCCCAGTTACTGT
TAAATTGAACTCAGGCGTTGTCTATAAAG
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Annotated Terms
The following terms have been associated with this mRNA:
Vocabulary: Biological Process
TermDefinition
GO:0000398mRNA splicing, via spliceosome
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
LSM6ATCC10864_005704Aspergillus niger ATCC 10864gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
ATCC10864_005704-T1ATCC10864_005704-T1-proteinAspergillus niger ATCC 10864polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
ATCC10864_005704-T1.cdsATCC10864_005704-T1.cdsAspergillus niger ATCC 10864CDS


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
ATCC10864_005704-T1.exon3ATCC10864_005704-T1.exon3Aspergillus niger ATCC 10864exon
ATCC10864_005704-T1.exon2ATCC10864_005704-T1.exon2Aspergillus niger ATCC 10864exon
ATCC10864_005704-T1.exon1ATCC10864_005704-T1.exon1Aspergillus niger ATCC 10864exon


Cross References
External references for this mRNA
DatabaseAccession
PFAMPF01423
InterProIPR001163
InterProIPR010920
InterProIPR016487
Properties
Property NameValue
ProductU4/U6-U5 snRNP complex subunit lsm6
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Aspergillus niger ATCC 10864 whole genome analysis2021-11-01
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
MCQH01000156supercontigMCQH01000156:6279..6735 -
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