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ATCC10864_005717-T1, ATCC10864_005717-T1 (mRNA) Aspergillus niger ATCC 10864

Overview
NameATCC10864_005717-T1
Unique NameATCC10864_005717-T1
TypemRNA
OrganismAspergillus niger ATCC 10864
Sequences
The following sequences are available for this feature:

mRNA from alignment at MCQH01000156:39878..40787+

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>ATCC10864_005717-T1 ID=ATCC10864_005717-T1|Name=ATCC10864_005717-T1|organism=Aspergillus niger ATCC 10864|type=mRNA|length=910bp|location=Sequence derived from alignment at MCQH01000156:39878..40787+ (Aspergillus niger ATCC 10864)
ATGCCTGCACCCACAGCTTTACGGCAAACTGCCGAAGTAGCAATGGCAGA
GACGCCTGTTGCGCCTACTATGTCAGGTCAGTCCCCGCCAGCGCTTTACG
GGAACCCGACTGGGTGGCCATCCTAACGTCCATTAGAGCAAGATGAGGAA
ATTTTGATCGACGCCCAAACGTCGGCAGATCAGGTCTCTGCAGGACTCGC
GCCTGAGATTGAGCCTACTCAAGACAGCGATATGCGTATTGACGAAGAGG
GACGGCCCCTCTTCACACCAGCAAAAGACACTAGCAGGGTATATCGAGTT
GAAAGCAGGAAGGTTCCTGTACCACCGCATAGGATGACTCCATTGAAGGC
TAGCTGGGCACGCATCTATCCCCCGCTTGTCGAACACCTCAAACTTCAAG
TGCGGATGAACATCAAGAACCGAGCTGTGGAGCTACGTACGTCACGATTC
ACGACCGATACGGAAGCCCTGCAGAAGGGCGAGGACTTCGTCAAAGCTTT
TACTCTTGGATTTGATGTCGACGACGCTATCGCACTTCTCAGATTGGATG
ATCTTTACATACGTTCATTCGAGATTCGGGATATCAAAGCCCTTAACGGA
GAGCACCTCAGTCGTGCAATTGGACGCTGTGCTGGTAAAGATGGGCGAAC
AAAGTTTGCTATAGAGAACGCTACTCGGACAAGAATCGTCATTGCAGACC
AGAAGATTCACTTGCTAGGCGCAGTGAAGAATGTCGACTGTGCCCAGCAG
GCCATTGTTAGCTTGATTCTTGGCAGTCCACCGGTCAGTAACCTTGTGCC
AATCCTTTCTATTGTCGTTTCAGAAGATGCAACATCTGCTAACTCCTCAA
TAGGGCAAAGTGTATGGGAACCTTCGTAAGGTGGCTTCTCGCATGAAGGA
GCGTTTTTAA
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Coding sequence (CDS) from alignment at MCQH01000156:39878..40787+

>ATCC10864_005717-T1 ID=ATCC10864_005717-T1|Name=ATCC10864_005717-T1|organism=Aspergillus niger ATCC 10864|type=CDS|length=2340bp|location=Sequence derived from alignment at MCQH01000156:39878..40787+ (Aspergillus niger ATCC 10864)
ATGCCTGCACCCACAGCTTTACGGCAAACTGCCGAAGTAGCAATGGCAGA
GACGCCTGTTGCGCCTACTATGTCAGAGCAAGATGAGGAAATTTTGATCG
ACGCCCAAACGTCGGCAGATCAGGTCTCTGCAGGACTCGCGCCTGAGATT
GAGCCTACTCAAGACAGCGATATGCGTATTGACGAAGAGGGACGGCCCCT
CTTCACACCAGCAAAAGACACTAGCAGGGTATATCGAGTTGAAAGCAGGA
AGGTTCCTGTACCACCGCATAGGATGACTCCATTGAAGGCTAGCTGGGCA
CGCATCTATCCCCCGCTTGTCGAACACCTCAAACTTCAAGTGCGGATGAA
CATCAAGAACCGAGCTGTGGAGCTACGTACGTCACGATTCACGACCGATA
CGGAAGCCCTGCAGAAGGGCGAGGACTTCGTCAAAGCTTTTACTCTTGGA
TTTGATGTCGACGACGCTATCGCACTTCTCAGATTGGATGATCTTTACAT
ACGTTCATTCGAGATTCGGGATATCAAAGCCCTTAACGGAGAGCACCTCA
GTCGTGCAATTGGACGCTGTGCTGGTAAAGATGGGCGAACAAAGTTTGCT
ATAGAGAACGCTACTCGGACAAGAATCGTCATTGCAGACCAGAAGATTCA
CTTGCTAGGCGCAGTGAAGAATGTCGACTGTGCCCAGCAGGCCATTGTTA
GCTTGATTCTTGGCAGTCCACCGGGCAAAGTGTATGGGAACCTTCGTAAG
GTGGCTTCTCGCATGAAGGAGCGTTTTTAAATGCCTGCACCCACAGCTTT
ACGGCAAACTGCCGAAGTAGCAATGGCAGAGACGCCTGTTGCGCCTACTA
TGTCAGAGCAAGATGAGGAAATTTTGATCGACGCCCAAACGTCGGCAGAT
CAGGTCTCTGCAGGACTCGCGCCTGAGATTGAGCCTACTCAAGACAGCGA
TATGCGTATTGACGAAGAGGGACGGCCCCTCTTCACACCAGCAAAAGACA
CTAGCAGGGTATATCGAGTTGAAAGCAGGAAGGTTCCTGTACCACCGCAT
AGGATGACTCCATTGAAGGCTAGCTGGGCACGCATCTATCCCCCGCTTGT
CGAACACCTCAAACTTCAAGTGCGGATGAACATCAAGAACCGAGCTGTGG
AGCTACGTACGTCACGATTCACGACCGATACGGAAGCCCTGCAGAAGGGC
GAGGACTTCGTCAAAGCTTTTACTCTTGGATTTGATGTCGACGACGCTAT
CGCACTTCTCAGATTGGATGATCTTTACATACGTTCATTCGAGATTCGGG
ATATCAAAGCCCTTAACGGAGAGCACCTCAGTCGTGCAATTGGACGCTGT
GCTGGTAAAGATGGGCGAACAAAGTTTGCTATAGAGAACGCTACTCGGAC
AAGAATCGTCATTGCAGACCAGAAGATTCACTTGCTAGGCGCAGTGAAGA
ATGTCGACTGTGCCCAGCAGGCCATTGTTAGCTTGATTCTTGGCAGTCCA
CCGGGCAAAGTGTATGGGAACCTTCGTAAGGTGGCTTCTCGCATGAAGGA
GCGTTTTTAAATGCCTGCACCCACAGCTTTACGGCAAACTGCCGAAGTAG
CAATGGCAGAGACGCCTGTTGCGCCTACTATGTCAGAGCAAGATGAGGAA
ATTTTGATCGACGCCCAAACGTCGGCAGATCAGGTCTCTGCAGGACTCGC
GCCTGAGATTGAGCCTACTCAAGACAGCGATATGCGTATTGACGAAGAGG
GACGGCCCCTCTTCACACCAGCAAAAGACACTAGCAGGGTATATCGAGTT
GAAAGCAGGAAGGTTCCTGTACCACCGCATAGGATGACTCCATTGAAGGC
TAGCTGGGCACGCATCTATCCCCCGCTTGTCGAACACCTCAAACTTCAAG
TGCGGATGAACATCAAGAACCGAGCTGTGGAGCTACGTACGTCACGATTC
ACGACCGATACGGAAGCCCTGCAGAAGGGCGAGGACTTCGTCAAAGCTTT
TACTCTTGGATTTGATGTCGACGACGCTATCGCACTTCTCAGATTGGATG
ATCTTTACATACGTTCATTCGAGATTCGGGATATCAAAGCCCTTAACGGA
GAGCACCTCAGTCGTGCAATTGGACGCTGTGCTGGTAAAGATGGGCGAAC
AAAGTTTGCTATAGAGAACGCTACTCGGACAAGAATCGTCATTGCAGACC
AGAAGATTCACTTGCTAGGCGCAGTGAAGAATGTCGACTGTGCCCAGCAG
GCCATTGTTAGCTTGATTCTTGGCAGTCCACCGGGCAAAGTGTATGGGAA
CCTTCGTAAGGTGGCTTCTCGCATGAAGGAGCGTTTTTAA
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Annotated Terms
The following terms have been associated with this mRNA:
Vocabulary: Molecular Function
TermDefinition
GO:0003723RNA binding
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
PNO1ATCC10864_005717Aspergillus niger ATCC 10864gene


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
ATCC10864_005717-T1.exon1ATCC10864_005717-T1.exon1Aspergillus niger ATCC 10864exon
ATCC10864_005717-T1.exon2ATCC10864_005717-T1.exon2Aspergillus niger ATCC 10864exon
ATCC10864_005717-T1.exon3ATCC10864_005717-T1.exon3Aspergillus niger ATCC 10864exon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
ATCC10864_005717-T1.cdsATCC10864_005717-T1.cdsAspergillus niger ATCC 10864CDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
ATCC10864_005717-T1ATCC10864_005717-T1-proteinAspergillus niger ATCC 10864polypeptide


Cross References
External references for this mRNA
DatabaseAccession
InterProIPR039912
InterProIPR036612
Properties
Property NameValue
NoteBUSCO:EOG09264SQJ
Productpre-rRNA-processing protein pno1
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Aspergillus niger ATCC 10864 whole genome analysis2021-11-01
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
MCQH01000156supercontigMCQH01000156:39878..40787 +
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