You are here

Home

ATCC64974_38230-T1, ATCC64974_38230-T1 (mRNA) Aspergillus niger N402

Overview
NameATCC64974_38230-T1
Unique NameATCC64974_38230-T1
TypemRNA
OrganismAspergillus niger N402
Sequences
The following sequences are available for this feature:

mRNA from alignment at OGUI01000005.1:1609363..1610060+

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>ATCC64974_38230-T1 ID=ATCC64974_38230-T1|Name=ATCC64974_38230-T1|organism=Aspergillus niger N402|type=mRNA|length=698bp|location=Sequence derived from alignment at OGUI01000005.1:1609363..1610060+ (Aspergillus niger N402)
ATGTCTGCCAGCCCATCCCCCTCTGCCGGTGGCGATAGCAAGCCCACCGA
TCAAATTCACTTCCGATTCTGTCGTGAATGGTAAGTTTTGATCTCTACAC
TTTGGTCGGACCTTCTGCTAACGTCTACAGTTCCAACTTGCTCTACCCGA
AGGAAGACCGCATCAACAACCGGTTGATGTTCACCTGCCGAACCTGCCAT
GTCGGCGAGCCCGCCACCTCCTACTGCGTCTATCAAAACAAACTCAACAC
TCAAGTCGGAGATACCGCCGGTGTGACCCAGGATGTGGGATCTGATCCTA
CGGTTTGTCTCCCGGGTTTCTGTGATCATTGTGGGGAAGAGATTACCTGC
TTCGTCTGTGACATATCCTCCGAGGACTCCTGGTCCGAAGAGGATTATGA
TGGCTTTTCGTCGTCATGAGGTCCTGCGAGCGCCGCGCTCGCGTCATGGA
TACATTCCAAGTTGTCTTGAAATTTCCGTGGCTAACCCACTCTTTCCCTA
GCTTCCTCGTTCCAACAAGCTCTGCCCGAGCTGCGGCGAAGCCGAAGCAG
TCTTCTTCCAGTCGCAACAGCGTTCCGCTGAAACGGGAATGGTAAGCCTT
CATGCCGGTTTACACCGCATCCATGAAGGGATCGGCTGACGCTTACTTTC
CAGAAACTTTACTACGTCTGTTGCGCGTGCGGCAATGTTTTCGTCTAA
back to top

Coding sequence (CDS) from alignment at OGUI01000005.1:1609363..1610060+

>ATCC64974_38230-T1 ID=ATCC64974_38230-T1|Name=ATCC64974_38230-T1|organism=Aspergillus niger N402|type=CDS|length=1548bp|location=Sequence derived from alignment at OGUI01000005.1:1609363..1610060+ (Aspergillus niger N402)
ATGTCTGCCAGCCCATCCCCCTCTGCCGGTGGCGATAGCAAGCCCACCGA
TCAAATTCACTTCCGATTCTGTCGTGAATGTTCCAACTTGCTCTACCCGA
AGGAAGACCGCATCAACAACCGGTTGATGTTCACCTGCCGAACCTGCCAT
GTCGGCGAGCCCGCCACCTCCTACTGCGTCTATCAAAACAAACTCAACAC
TCAAGTCGGAGATACCGCCGGTGTGACCCAGGATGTGGGATCTGATCCTA
CGCTTCCTCGTTCCAACAAGCTCTGCCCGAGCTGCGGCGAAGCCGAAGCA
GTCTTCTTCCAGTCGCAACAGCGTTCCGCTGAAACGGGAATGAAACTTTA
CTACGTCTGTTGCGCGTGCGGCAATGTTTTCGTCTAAATGTCTGCCAGCC
CATCCCCCTCTGCCGGTGGCGATAGCAAGCCCACCGATCAAATTCACTTC
CGATTCTGTCGTGAATGTTCCAACTTGCTCTACCCGAAGGAAGACCGCAT
CAACAACCGGTTGATGTTCACCTGCCGAACCTGCCATGTCGGCGAGCCCG
CCACCTCCTACTGCGTCTATCAAAACAAACTCAACACTCAAGTCGGAGAT
ACCGCCGGTGTGACCCAGGATGTGGGATCTGATCCTACGCTTCCTCGTTC
CAACAAGCTCTGCCCGAGCTGCGGCGAAGCCGAAGCAGTCTTCTTCCAGT
CGCAACAGCGTTCCGCTGAAACGGGAATGAAACTTTACTACGTCTGTTGC
GCGTGCGGCAATGTTTTCGTCTAAATGTCTGCCAGCCCATCCCCCTCTGC
CGGTGGCGATAGCAAGCCCACCGATCAAATTCACTTCCGATTCTGTCGTG
AATGTTCCAACTTGCTCTACCCGAAGGAAGACCGCATCAACAACCGGTTG
ATGTTCACCTGCCGAACCTGCCATGTCGGCGAGCCCGCCACCTCCTACTG
CGTCTATCAAAACAAACTCAACACTCAAGTCGGAGATACCGCCGGTGTGA
CCCAGGATGTGGGATCTGATCCTACGCTTCCTCGTTCCAACAAGCTCTGC
CCGAGCTGCGGCGAAGCCGAAGCAGTCTTCTTCCAGTCGCAACAGCGTTC
CGCTGAAACGGGAATGAAACTTTACTACGTCTGTTGCGCGTGCGGCAATG
TTTTCGTCTAAATGTCTGCCAGCCCATCCCCCTCTGCCGGTGGCGATAGC
AAGCCCACCGATCAAATTCACTTCCGATTCTGTCGTGAATGTTCCAACTT
GCTCTACCCGAAGGAAGACCGCATCAACAACCGGTTGATGTTCACCTGCC
GAACCTGCCATGTCGGCGAGCCCGCCACCTCCTACTGCGTCTATCAAAAC
AAACTCAACACTCAAGTCGGAGATACCGCCGGTGTGACCCAGGATGTGGG
ATCTGATCCTACGCTTCCTCGTTCCAACAAGCTCTGCCCGAGCTGCGGCG
AAGCCGAAGCAGTCTTCTTCCAGTCGCAACAGCGTTCCGCTGAAACGGGA
ATGAAACTTTACTACGTCTGTTGCGCGTGCGGCAATGTTTTCGTCTAA
back to top
Annotated Terms
The following terms have been associated with this mRNA:
Vocabulary: Molecular Function
TermDefinition
GO:0003676nucleic acid binding
GO:0008270zinc ion binding
Vocabulary: Biological Process
TermDefinition
GO:0006379mRNA cleavage
GO:0006351transcription, DNA-templated
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
ATCC64974_38230ATCC64974_38230Aspergillus niger N402gene


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
ATCC64974_38230-T1.exon1ATCC64974_38230-T1.exon1Aspergillus niger N402exon
ATCC64974_38230-T1.exon2ATCC64974_38230-T1.exon2Aspergillus niger N402exon
ATCC64974_38230-T1.exon3ATCC64974_38230-T1.exon3Aspergillus niger N402exon
ATCC64974_38230-T1.exon4ATCC64974_38230-T1.exon4Aspergillus niger N402exon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
ATCC64974_38230-T1.cdsATCC64974_38230-T1.cdsAspergillus niger N402CDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
ATCC64974_38230-T1ATCC64974_38230-T1-proteinAspergillus niger N402polypeptide


Properties
Property NameValue
NoteBUSCO:EOG092654O3
DBxrefInterPro:IPR034012
DBxrefInterPro:IPR012164
DBxrefInterPro:IPR001222
DBxrefInterPro:IPR001529
DBxrefPFAM:PF01096
DBxrefPFAM:PF02150
Producthypothetical protein
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Aspergillus niger N402 whole genome analysis2021-11-01
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
OGUI01000005.1supercontigOGUI01000005.1:1609363..1610060 +
Powered by Drupal