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ATCC64974_108940-T1, ATCC64974_108940-T1 (mRNA) Aspergillus niger N402

Overview
NameATCC64974_108940-T1
Unique NameATCC64974_108940-T1
TypemRNA
OrganismAspergillus niger N402
Sequences
The following sequences are available for this feature:

mRNA from alignment at OGUI01000017.1:4164088..4164718+

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>ATCC64974_108940-T1 ID=ATCC64974_108940-T1|Name=ATCC64974_108940-T1|organism=Aspergillus niger N402|type=mRNA|length=631bp|location=Sequence derived from alignment at OGUI01000017.1:4164088..4164718+ (Aspergillus niger N402)
ATGGCTCCCATCCCGCTCAGCACGGTCGACAGTGTGTATTGATTCTTTCT
AATCCAATGTTATCAGTTACTAACTCTATCTTCTGCCCAGCCGACCTCAA
AGACGTAATCCAACACCTCTTTGAAATCCAATCCGCCGTTCACGGCTACC
TCGGTCCCGAAACCCAACAAGAGCTCGTTCGCAAAATGTACTCTCCTTCC
TATCCCTGCCATCTTCCTCACCTAAGATTCCACTCTACTAACGGATTACG
TGTTATGCATTCAGAAAGAACCTCACCCTCGCGCTCTCCACCCTCAGCAC
ACACACCTCCGATAATCACCCCGACGCACAATCACAATCACCAGGAAACA
GCAACGACCCTCCCATCCACAGCATCCAACTCCCCCCCGAGATTATCGAC
TACGTAGATGCAGCAAGGAATCCGGATATCTACACAAGAGAATTCGTGGA
GTTGATCCAGCGCGGGAACCAGGATCTGAGGGGGAAGAAGGAGGCGTTTG
GGAGTTTCCGGGATGTGTTAGCGAGGGAGATGAGGGGAGCGATGCCGGAG
GTTAGGGGGGAGGTGGATAGAGTGGTTGCTTCGTTCGGTGGTGATGGAAA
TGGGAATAATAATGGGGAGGGGAGGGGATGA
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Coding sequence (CDS) from alignment at OGUI01000017.1:4164088..4164718+

>ATCC64974_108940-T1 ID=ATCC64974_108940-T1|Name=ATCC64974_108940-T1|organism=Aspergillus niger N402|type=CDS|length=1485bp|location=Sequence derived from alignment at OGUI01000017.1:4164088..4164718+ (Aspergillus niger N402)
ATGGCTCCCATCCCGCTCAGCACGGTCGACACCGACCTCAAAGACGTAAT
CCAACACCTCTTTGAAATCCAATCCGCCGTTCACGGCTACCTCGGTCCCG
AAACCCAACAAGAGCTCGTTCGCAAAATAAAGAACCTCACCCTCGCGCTC
TCCACCCTCAGCACACACACCTCCGATAATCACCCCGACGCACAATCACA
ATCACCAGGAAACAGCAACGACCCTCCCATCCACAGCATCCAACTCCCCC
CCGAGATTATCGACTACGTAGATGCAGCAAGGAATCCGGATATCTACACA
AGAGAATTCGTGGAGTTGATCCAGCGCGGGAACCAGGATCTGAGGGGGAA
GAAGGAGGCGTTTGGGAGTTTCCGGGATGTGTTAGCGAGGGAGATGAGGG
GAGCGATGCCGGAGGTTAGGGGGGAGGTGGATAGAGTGGTTGCTTCGTTC
GGTGGTGATGGAAATGGGAATAATAATGGGGAGGGGAGGGGATGAATGGC
TCCCATCCCGCTCAGCACGGTCGACACCGACCTCAAAGACGTAATCCAAC
ACCTCTTTGAAATCCAATCCGCCGTTCACGGCTACCTCGGTCCCGAAACC
CAACAAGAGCTCGTTCGCAAAATAAAGAACCTCACCCTCGCGCTCTCCAC
CCTCAGCACACACACCTCCGATAATCACCCCGACGCACAATCACAATCAC
CAGGAAACAGCAACGACCCTCCCATCCACAGCATCCAACTCCCCCCCGAG
ATTATCGACTACGTAGATGCAGCAAGGAATCCGGATATCTACACAAGAGA
ATTCGTGGAGTTGATCCAGCGCGGGAACCAGGATCTGAGGGGGAAGAAGG
AGGCGTTTGGGAGTTTCCGGGATGTGTTAGCGAGGGAGATGAGGGGAGCG
ATGCCGGAGGTTAGGGGGGAGGTGGATAGAGTGGTTGCTTCGTTCGGTGG
TGATGGAAATGGGAATAATAATGGGGAGGGGAGGGGATGAATGGCTCCCA
TCCCGCTCAGCACGGTCGACACCGACCTCAAAGACGTAATCCAACACCTC
TTTGAAATCCAATCCGCCGTTCACGGCTACCTCGGTCCCGAAACCCAACA
AGAGCTCGTTCGCAAAATAAAGAACCTCACCCTCGCGCTCTCCACCCTCA
GCACACACACCTCCGATAATCACCCCGACGCACAATCACAATCACCAGGA
AACAGCAACGACCCTCCCATCCACAGCATCCAACTCCCCCCCGAGATTAT
CGACTACGTAGATGCAGCAAGGAATCCGGATATCTACACAAGAGAATTCG
TGGAGTTGATCCAGCGCGGGAACCAGGATCTGAGGGGGAAGAAGGAGGCG
TTTGGGAGTTTCCGGGATGTGTTAGCGAGGGAGATGAGGGGAGCGATGCC
GGAGGTTAGGGGGGAGGTGGATAGAGTGGTTGCTTCGTTCGGTGGTGATG
GAAATGGGAATAATAATGGGGAGGGGAGGGGATGA
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Annotated Terms
The following terms have been associated with this mRNA:
Vocabulary: Cellular Component
TermDefinition
GO:0016592mediator complex
Vocabulary: Molecular Function
TermDefinition
GO:0003712transcription coregulator activity
Vocabulary: Biological Process
TermDefinition
GO:0006357regulation of transcription by RNA polymerase II
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NUT2ATCC64974_108940Aspergillus niger N402gene


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
ATCC64974_108940-T1.exon1ATCC64974_108940-T1.exon1Aspergillus niger N402exon
ATCC64974_108940-T1.exon2ATCC64974_108940-T1.exon2Aspergillus niger N402exon
ATCC64974_108940-T1.exon3ATCC64974_108940-T1.exon3Aspergillus niger N402exon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
ATCC64974_108940-T1.cdsATCC64974_108940-T1.cdsAspergillus niger N402CDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
ATCC64974_108940-T1ATCC64974_108940-T1-proteinAspergillus niger N402polypeptide


Properties
Property NameValue
NoteBUSCO:EOG09264V30
DBxrefInterPro:IPR019145
DBxrefPFAM:PF09748
ProductRNA polymerase II mediator complex subunit
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Aspergillus niger N402 whole genome analysis2021-11-01
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
OGUI01000017.1supercontigOGUI01000017.1:4164088..4164718 +
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