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Sequences
The following sequences are available for this feature:
mRNA from alignment at NKJJ01000004.1:2020493..2021482- Legend: polypeptideCDSexon Hold the cursor over a type above to highlight its positions in the sequence below. >CAN33_3180-T1 ID=CAN33_3180-T1|Name=CAN33_3180-T1|organism=Aspergillus niger FDAARGOS_311|type=mRNA|length=990bp|location=Sequence derived from alignment at NKJJ01000004.1:2020493..2021482- (Aspergillus niger FDAARGOS_311)
ATGGCGACCGAGTTGACCGTCCAGTCGGAACGTGCGTTCCAGAAGCAGCC
TCACATCTTCGTCAACCCCAAGGCTCAGGCGAAGAGCAAGAAGGTTGGCA
CCGGCCGCCGTTGGTACAAGGATGTCGGTCTGGGTTTCCGTACCCCCAAG
ACCGCCATTGAGGGCTCCTACATCGGTATGCACGACCTATGTTGAAATTT
TATTTGCGGCGTTATCGACTTCCGATCATGCGGGACCAAGACTGGGAATC
TTTTGGAGGCTATGGCGAGATGAGAATATGCCGCATGGAGAAGAGAGAAA
TCACCTGGAAAGCGCCAGCATGAGTCTACGATAAAATGCAACTATCTTCT
GCAAAGGATCGGGATGGAATGCGACAAGAGAAGGAATCAAAGATCAGACC
TGGAAAAAGCGCTTGGCGACAGATTTGCGGAACCCGGTTATTCTCATCTC
TCAAAGGCTCCGGAGAAGTCCAGTCATGTCGTTTGAAATCTCCAGGTGGG
ACATATCACTGATATCGAACAGACAAGAAGTGCCCCTTCACCGGTCTGGT
TTCCATCCGTGGCCGTATCCTGACCGGCCGTGTCGTCTCCACCAAGATGC
ACCGTACCATCGTCATCCGCCGTGAATACCTCCACTACGTCCCCAAGTAC
AACCGTTACGAGAAGAGACACAAGAACCTTGCCGCTCACGTCTCTCCCGC
TTTCCGTGTTGAGGAAGGTGACTGGGTCACCGTCGGCCAGTGCCGCCCCC
TGAGCAAGACTGTACGTCAAACTTTCCTCGGGATATCTTCTATGGTTACT
GGTGGCAAATGCATTCCTTTCCTATACGCCTGAAAGGATATGGATGATGT
CCAGCGCTATCGAAGATATTCTACATGGATCGCAAAAATATATACGTCAG
ATGCGCTAACTTACTATTCAGGTCCGCTTCAACGTCCTCCGTGTCCTGCC
CCGTACCGGCAAGGCCGTCAAGGCTTTCTCCAAGTTCTAA back to topCoding sequence (CDS) from alignment at NKJJ01000004.1:2020493..2021482- >CAN33_3180-T1 ID=CAN33_3180-T1|Name=CAN33_3180-T1|organism=Aspergillus niger FDAARGOS_311|type=CDS|length=1449bp|location=Sequence derived from alignment at NKJJ01000004.1:2020493..2021482- (Aspergillus niger FDAARGOS_311)
GTCCGCTTCAACGTCCTCCGTGTCCTGCCCCGTACCGGCAAGGCCGTCAA
GGCTTTCTCCAAGTTCTAAACAAGAAGTGCCCCTTCACCGGTCTGGTTTC
CATCCGTGGCCGTATCCTGACCGGCCGTGTCGTCTCCACCAAGATGCACC
GTACCATCGTCATCCGCCGTGAATACCTCCACTACGTCCCCAAGTACAAC
CGTTACGAGAAGAGACACAAGAACCTTGCCGCTCACGTCTCTCCCGCTTT
CCGTGTTGAGGAAGGTGACTGGGTCACCGTCGGCCAGTGCCGCCCCCTGA
GCAAGACTATGGCGACCGAGTTGACCGTCCAGTCGGAACGTGCGTTCCAG
AAGCAGCCTCACATCTTCGTCAACCCCAAGGCTCAGGCGAAGAGCAAGAA
GGTTGGCACCGGCCGCCGTTGGTACAAGGATGTCGGTCTGGGTTTCCGTA
CCCCCAAGACCGCCATTGAGGGCTCCTACATCGGTCCGCTTCAACGTCCT
CCGTGTCCTGCCCCGTACCGGCAAGGCCGTCAAGGCTTTCTCCAAGTTCT
AAACAAGAAGTGCCCCTTCACCGGTCTGGTTTCCATCCGTGGCCGTATCC
TGACCGGCCGTGTCGTCTCCACCAAGATGCACCGTACCATCGTCATCCGC
CGTGAATACCTCCACTACGTCCCCAAGTACAACCGTTACGAGAAGAGACA
CAAGAACCTTGCCGCTCACGTCTCTCCCGCTTTCCGTGTTGAGGAAGGTG
ACTGGGTCACCGTCGGCCAGTGCCGCCCCCTGAGCAAGACTATGGCGACC
GAGTTGACCGTCCAGTCGGAACGTGCGTTCCAGAAGCAGCCTCACATCTT
CGTCAACCCCAAGGCTCAGGCGAAGAGCAAGAAGGTTGGCACCGGCCGCC
GTTGGTACAAGGATGTCGGTCTGGGTTTCCGTACCCCCAAGACCGCCATT
GAGGGCTCCTACATCGGTCCGCTTCAACGTCCTCCGTGTCCTGCCCCGTA
CCGGCAAGGCCGTCAAGGCTTTCTCCAAGTTCTAAACAAGAAGTGCCCCT
TCACCGGTCTGGTTTCCATCCGTGGCCGTATCCTGACCGGCCGTGTCGTC
TCCACCAAGATGCACCGTACCATCGTCATCCGCCGTGAATACCTCCACTA
CGTCCCCAAGTACAACCGTTACGAGAAGAGACACAAGAACCTTGCCGCTC
ACGTCTCTCCCGCTTTCCGTGTTGAGGAAGGTGACTGGGTCACCGTCGGC
CAGTGCCGCCCCCTGAGCAAGACTATGGCGACCGAGTTGACCGTCCAGTC
GGAACGTGCGTTCCAGAAGCAGCCTCACATCTTCGTCAACCCCAAGGCTC
AGGCGAAGAGCAAGAAGGTTGGCACCGGCCGCCGTTGGTACAAGGATGTC
GGTCTGGGTTTCCGTACCCCCAAGACCGCCATTGAGGGCTCCTACATCG back to top
Annotated Terms
The following terms have been associated with this mRNA:
Vocabulary: Cellular Component
| Term | Definition |
|---|
| GO:0005840 | ribosome |
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0003735 | structural constituent of ribosome |
Vocabulary: Biological Process
| Term | Definition |
|---|
| GO:0006412 | translation |
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following exon feature(s) are a part of this mRNA:
Properties
| Property Name | Value |
|---|
| Note | BUSCO:EOG092653NM |
| DBxref | InterPro:IPR012340 |
| DBxref | InterPro:IPR019979 |
| DBxref | InterPro:IPR028333 |
| DBxref | InterPro:IPR032440 |
| DBxref | InterPro:IPR000266 |
| DBxref | PFAM:PF16205 |
| DBxref | PFAM:PF00366 |
| Product | ribosomal 40S subunit protein S11A |
Analyses
This mRNA is derived from or has results from the following analyses
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| NKJJ01000004.1 | supercontig | NKJJ01000004.1:2020493..2021482 - |
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