You are here

Home

CAN33_28935-T1, CAN33_28935-T1 (mRNA) Aspergillus niger FDAARGOS_311

Overview
NameCAN33_28935-T1
Unique NameCAN33_28935-T1
TypemRNA
OrganismAspergillus niger FDAARGOS_311
Sequences
The following sequences are available for this feature:

mRNA from alignment at NKJJ01000008.1:469067..470072+

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>CAN33_28935-T1 ID=CAN33_28935-T1|Name=CAN33_28935-T1|organism=Aspergillus niger FDAARGOS_311|type=mRNA|length=1006bp|location=Sequence derived from alignment at NKJJ01000008.1:469067..470072+ (Aspergillus niger FDAARGOS_311)
ATGTTCGCCCCAACCACTCTCCTCCCCCTTCTCGCTTCCTCAGCGCTGGC
GCTGCCCGCCCTCACCACCCGCGCTCAAACCCAATCCTCCACCTCCCTCT
GCGGTGACTACGACTACATCATCCTCCAGGACTCGCCATGGATCGTGTAC
AACATGCTCTACAATGCCGACGAGATCGTCGGTACCCAGTGTACCGACTA
CGGCGAGATGACTACCTCCACGAATGGCACGAAGGAGGTCGTTTGGAGTA
GTGTGACTGATATTGAATATGTGGAGAGCACGTAGGCCACCTTCCCCTCC
TTTCCTTATCCCATACTGCTAAATGTATCACTAACGATGGTTATAGGAAC
AATGTCCCTAAGGGATACTCCTTCGTCGGACTGACCCAGAACCTCGAGAC
CAAGATCTCGGCTATTGAGTCCATTCCAGCTGAATATACCTGGTCGAGGA
CGAATACTACCGCCTTCAAGGGTACATACCCCTCCCTCTCTCCCAACTCT
TAAGATTGATTCCGGCACTAATGATTGGAATGCTATAGGCAACGTCTGCT
TCGACTTCATCACCTCCCCCACCAAGGGCGACTCGACCTCCACCTCCGCC
CACGAACTCATGCTCTGGCTACAATACGAAGGCGGCCAGCTCCCTATCGG
CTGGACTAACGGGGCTGTTGCCACCATCGATAACCTCTTCGGCACGTCCT
GGAAGCTGTACGAGGATGTGAACGAGGATTCGGGTGTCACTGTTAGCTCG
TTGTTGCCGGATACCCAGTTCGAGGGTTCCTTCGAGGGTGATCTCAAGGA
ATGGTTGTTGGAGTTGGTCCAGTTGGGCAAGTTTACTAAGGAGGCGTATG
TGAATGTTGGGAACGGAGGGTGAGTTTTTATTTCTTCTTACTTTGTCGGA
GATTGGGTGAAGAGACGCTAACAGGGGGGTGTGAATTAGTACCGAGTTTT
TCTACGGTAACTCGGTTATGAATGCTACCCTGGGGTTGCAGATTAACTTG
GATTAG
back to top

Coding sequence (CDS) from alignment at NKJJ01000008.1:469067..470072+

>CAN33_28935-T1 ID=CAN33_28935-T1|Name=CAN33_28935-T1|organism=Aspergillus niger FDAARGOS_311|type=CDS|length=3216bp|location=Sequence derived from alignment at NKJJ01000008.1:469067..470072+ (Aspergillus niger FDAARGOS_311)
ATGTTCGCCCCAACCACTCTCCTCCCCCTTCTCGCTTCCTCAGCGCTGGC
GCTGCCCGCCCTCACCACCCGCGCTCAAACCCAATCCTCCACCTCCCTCT
GCGGTGACTACGACTACATCATCCTCCAGGACTCGCCATGGATCGTGTAC
AACATGCTCTACAATGCCGACGAGATCGTCGGTACCCAGTGTACCGACTA
CGGCGAGATGACTACCTCCACGAATGGCACGAAGGAGGTCGTTTGGAGTA
GTGTGACTGATATTGAATATGTGGAGAGCACGAACAATGTCCCTAAGGGA
TACTCCTTCGTCGGACTGACCCAGAACCTCGAGACCAAGATCTCGGCTAT
TGAGTCCATTCCAGCTGAATATACCTGGTCGAGGACGAATACTACCGCCT
TCAAGGGCAACGTCTGCTTCGACTTCATCACCTCCCCCACCAAGGGCGAC
TCGACCTCCACCTCCGCCCACGAACTCATGCTCTGGCTACAATACGAAGG
CGGCCAGCTCCCTATCGGCTGGACTAACGGGGCTGTTGCCACCATCGATA
ACCTCTTCGGCACGTCCTGGAAGCTGTACGAGGATGTGAACGAGGATTCG
GGTGTCACTGTTAGCTCGTTGTTGCCGGATACCCAGTTCGAGGGTTCCTT
CGAGGGTGATCTCAAGGAATGGTTGTTGGAGTTGGTCCAGTTGGGCAAGT
TTACTAAGGAGGCGTATGTGAATGTTGGGAACGGAGGTACCGAGTTTTTC
TACGGTAACTCGGTTATGAATGCTACCCTGGGGTTGCAGATTAACTTGGA
TTAGATGTTCGCCCCAACCACTCTCCTCCCCCTTCTCGCTTCCTCAGCGC
TGGCGCTGCCCGCCCTCACCACCCGCGCTCAAACCCAATCCTCCACCTCC
CTCTGCGGTGACTACGACTACATCATCCTCCAGGACTCGCCATGGATCGT
GTACAACATGCTCTACAATGCCGACGAGATCGTCGGTACCCAGTGTACCG
ACTACGGCGAGATGACTACCTCCACGAATGGCACGAAGGAGGTCGTTTGG
AGTAGTGTGACTGATATTGAATATGTGGAGAGCACGAACAATGTCCCTAA
GGGATACTCCTTCGTCGGACTGACCCAGAACCTCGAGACCAAGATCTCGG
CTATTGAGTCCATTCCAGCTGAATATACCTGGTCGAGGACGAATACTACC
GCCTTCAAGGGCAACGTCTGCTTCGACTTCATCACCTCCCCCACCAAGGG
CGACTCGACCTCCACCTCCGCCCACGAACTCATGCTCTGGCTACAATACG
AAGGCGGCCAGCTCCCTATCGGCTGGACTAACGGGGCTGTTGCCACCATC
GATAACCTCTTCGGCACGTCCTGGAAGCTGTACGAGGATGTGAACGAGGA
TTCGGGTGTCACTGTTAGCTCGTTGTTGCCGGATACCCAGTTCGAGGGTT
CCTTCGAGGGTGATCTCAAGGAATGGTTGTTGGAGTTGGTCCAGTTGGGC
AAGTTTACTAAGGAGGCGTATGTGAATGTTGGGAACGGAGGTACCGAGTT
TTTCTACGGTAACTCGGTTATGAATGCTACCCTGGGGTTGCAGATTAACT
TGGATTAGATGTTCGCCCCAACCACTCTCCTCCCCCTTCTCGCTTCCTCA
GCGCTGGCGCTGCCCGCCCTCACCACCCGCGCTCAAACCCAATCCTCCAC
CTCCCTCTGCGGTGACTACGACTACATCATCCTCCAGGACTCGCCATGGA
TCGTGTACAACATGCTCTACAATGCCGACGAGATCGTCGGTACCCAGTGT
ACCGACTACGGCGAGATGACTACCTCCACGAATGGCACGAAGGAGGTCGT
TTGGAGTAGTGTGACTGATATTGAATATGTGGAGAGCACGAACAATGTCC
CTAAGGGATACTCCTTCGTCGGACTGACCCAGAACCTCGAGACCAAGATC
TCGGCTATTGAGTCCATTCCAGCTGAATATACCTGGTCGAGGACGAATAC
TACCGCCTTCAAGGGCAACGTCTGCTTCGACTTCATCACCTCCCCCACCA
AGGGCGACTCGACCTCCACCTCCGCCCACGAACTCATGCTCTGGCTACAA
TACGAAGGCGGCCAGCTCCCTATCGGCTGGACTAACGGGGCTGTTGCCAC
CATCGATAACCTCTTCGGCACGTCCTGGAAGCTGTACGAGGATGTGAACG
AGGATTCGGGTGTCACTGTTAGCTCGTTGTTGCCGGATACCCAGTTCGAG
GGTTCCTTCGAGGGTGATCTCAAGGAATGGTTGTTGGAGTTGGTCCAGTT
GGGCAAGTTTACTAAGGAGGCGTATGTGAATGTTGGGAACGGAGGTACCG
AGTTTTTCTACGGTAACTCGGTTATGAATGCTACCCTGGGGTTGCAGATT
AACTTGGATTAGATGTTCGCCCCAACCACTCTCCTCCCCCTTCTCGCTTC
CTCAGCGCTGGCGCTGCCCGCCCTCACCACCCGCGCTCAAACCCAATCCT
CCACCTCCCTCTGCGGTGACTACGACTACATCATCCTCCAGGACTCGCCA
TGGATCGTGTACAACATGCTCTACAATGCCGACGAGATCGTCGGTACCCA
GTGTACCGACTACGGCGAGATGACTACCTCCACGAATGGCACGAAGGAGG
TCGTTTGGAGTAGTGTGACTGATATTGAATATGTGGAGAGCACGAACAAT
GTCCCTAAGGGATACTCCTTCGTCGGACTGACCCAGAACCTCGAGACCAA
GATCTCGGCTATTGAGTCCATTCCAGCTGAATATACCTGGTCGAGGACGA
ATACTACCGCCTTCAAGGGCAACGTCTGCTTCGACTTCATCACCTCCCCC
ACCAAGGGCGACTCGACCTCCACCTCCGCCCACGAACTCATGCTCTGGCT
ACAATACGAAGGCGGCCAGCTCCCTATCGGCTGGACTAACGGGGCTGTTG
CCACCATCGATAACCTCTTCGGCACGTCCTGGAAGCTGTACGAGGATGTG
AACGAGGATTCGGGTGTCACTGTTAGCTCGTTGTTGCCGGATACCCAGTT
CGAGGGTTCCTTCGAGGGTGATCTCAAGGAATGGTTGTTGGAGTTGGTCC
AGTTGGGCAAGTTTACTAAGGAGGCGTATGTGAATGTTGGGAACGGAGGT
ACCGAGTTTTTCTACGGTAACTCGGTTATGAATGCTACCCTGGGGTTGCA
GATTAACTTGGATTAG
back to top
Annotated Terms
The following terms have been associated with this mRNA:
Vocabulary: Molecular Function
TermDefinition
GO:0004553hydrolase activity, hydrolyzing O-glycosyl compounds
GO:0008810cellulase activity
Vocabulary: Biological Process
TermDefinition
GO:0000272polysaccharide catabolic process
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
CAN33_28935CAN33_28935Aspergillus niger FDAARGOS_311gene


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CAN33_28935-T1.exon1CAN33_28935-T1.exon1Aspergillus niger FDAARGOS_311exon
CAN33_28935-T1.exon2CAN33_28935-T1.exon2Aspergillus niger FDAARGOS_311exon
CAN33_28935-T1.exon3CAN33_28935-T1.exon3Aspergillus niger FDAARGOS_311exon
CAN33_28935-T1.exon4CAN33_28935-T1.exon4Aspergillus niger FDAARGOS_311exon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CAN33_28935-T1.cdsCAN33_28935-T1.cdsAspergillus niger FDAARGOS_311CDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
CAN33_28935-T1CAN33_28935-T1-proteinAspergillus niger FDAARGOS_311polypeptide


Properties
Property NameValue
NoteantiSMASH:Cluster_10000081.4
NoteSECRETED:SignalP(1-17)
NoteCAZy:GH12
DBxrefInterPro:IPR013320
DBxrefInterPro:IPR013319
DBxrefInterPro:IPR002594
DBxrefPFAM:PF01670
ProductGlycosyl hydrolase family 12 family protein
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Aspergillus niger FDAARGOS_311 whole genome analysis2021-11-01
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
NKJJ01000008.1supercontigNKJJ01000008.1:469067..470072 +
Powered by Drupal