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Sequences
The following sequences are available for this feature:
mRNA from alignment at NKJJ01000017.1:846800..848434- Legend: polypeptideCDSexon Hold the cursor over a type above to highlight its positions in the sequence below. >CAN33_37425-T1 ID=CAN33_37425-T1|Name=CAN33_37425-T1|organism=Aspergillus niger FDAARGOS_311|type=mRNA|length=1635bp|location=Sequence derived from alignment at NKJJ01000017.1:846800..848434- (Aspergillus niger FDAARGOS_311)
ATGACGCAGATCCCTGCGGGCAAGTCTACAGGAGGCGTTCTCCAGATCCC
CGCCGCTGCGACTCAGAAGAATGCCTCTGCGCCGCCAAAGAAGGCTCCAA
AGCCAGCCGCGCCTCGATTGAAGCTCCTCGTCAGACGTCTGCCACCCGGA
CTAACACAAGCGGAATTCGAGACAGCGTTGGGCTCGGAATGGAAGGTTGG
CGGTGGGAAGGTCGACTGGTTCCAATACAAGCCAGGAAAGGTCTCTAAAG
AGTAAGCTAGCATTGTAACCTGTGAAGACTTTCGCTAACAGTATGCTGTA
TAGTCCAGCCAAACCTTCTCGGCCTTCGCGTGCGTATATCCATGTCATGT
CCAGCGATCACACCATCCCGCTCTCGAACAAAGTCCGCCAAACGTCTTTC
TTGGACGCCCGTAATACCTCAACCGATCCTGTCCTTTTGGGACCTCCATC
TTTGGAATTCGCACCTTATGCCAAGATTGCCGGAAACCGTTCGCGCAAAG
ACGCCCGTCAAGGAACTATCGACCAAGACCCTGAGTTCATCGCTTTTCTC
GAGAGCCTCACGCAACCACTTGCCAAACCGGCTCCTGTCGAGTCTGGCGC
TGATGGGGAGGATAAGAAGGAGACGGTGACTGTTACGCCTTTGGTGCAGT
ACATCAGAGAGAAGAAGGCCAACAAGGCGAAGGAATCCAGCAAATCTAAA
CACAAGTCGGACAAGGACTCCAAAGGAGAGAAGATCCAGGCGAAGAAGTT
GCTACAACGTCCTGACAGGGATACAAAGGACTCTGCTGCTACGGAGAAAC
CCGAGAAGAAATCCAAGTCCGACAAGGCTACCAAGGAAGCTGTGAAGGCC
GCAAACAAGCAGGCTGCTAATGTTGCTGCCAAGCAAGCCGCGAAATCGTC
TCCAGCGCAAAACTCCCCCAAGGATACGCCACAGACATCCACAGAGCGGA
AACGCGAACGTGGAAGTGTCGCGGCTGCTGCCAAGATCCTCCAGCGCGAC
CTGGGGCTTGCTCCGTCCGGTCGCCGCAGGGGTGGCAAAGCTGCAGCCGC
CGATGGAGATACACCCAAGTCTGATCAGAGCGGAACTGCAACCCCAGATA
CGAGCAAGAAGGAGACGCCGTCCAGACCTTCCAAAGGGGCGAACTCGGCT
CGGGACAAGTCCAAGGGCAGCAACACACAACCACCCAGTGAGCCATCCGA
AGCAAGCACTCCAGTCAGTACTACACCTAAGCCGGGAAAGTCTGGGAAGG
GGAAGCAAGCATCGGCAGGACCGGCAGCGACCGCTACCCAAGCATTCCTT
AAGCACGCCAACCCATCTCAGGGCGTTACCGAGCCACTCCTGGAAGCCGC
ATTCGCGCCATTCGGAAAGGTTCTCAAGGTGGAGATTGATAAGAAGAAAG
GATTCGGCTACATTGATTTCGCAGAACCCGACGGACTTCAAAAGGCCATT
GCTGCTAGTCCTGTCTCGGTCGCGCAGAGTCAAGTTGTCGTGCTAGAGAG
AAAGGCCAACCCCGGTGGAGAGAAGGGCCGCGGCAAAGGCCGCAGTGAAG
CCCAAGCATCCTCGGGAGGCGGCGGCGGCGGCGGTGGTGGTGGTGGTGGT
GGTGGTAACAACAGCCGGGGGAATAAGTCCAATGA back to topCoding sequence (CDS) from alignment at NKJJ01000017.1:846800..848434- >CAN33_37425-T1 ID=CAN33_37425-T1|Name=CAN33_37425-T1|organism=Aspergillus niger FDAARGOS_311|type=CDS|length=4500bp|location=Sequence derived from alignment at NKJJ01000017.1:846800..848434- (Aspergillus niger FDAARGOS_311)
TCCAATGATCCAGCCAAACCTTCTCGGCCTTCGCGTGCGTATATCCATGT
CATGTCCAGCGATCACACCATCCCGCTCTCGAACAAAGTCCGCCAAACGT
CTTTCTTGGACGCCCGTAATACCTCAACCGATCCTGTCCTTTTGGGACCT
CCATCTTTGGAATTCGCACCTTATGCCAAGATTGCCGGAAACCGTTCGCG
CAAAGACGCCCGTCAAGGAACTATCGACCAAGACCCTGAGTTCATCGCTT
TTCTCGAGAGCCTCACGCAACCACTTGCCAAACCGGCTCCTGTCGAGTCT
GGCGCTGATGGGGAGGATAAGAAGGAGACGGTGACTGTTACGCCTTTGGT
GCAGTACATCAGAGAGAAGAAGGCCAACAAGGCGAAGGAATCCAGCAAAT
CTAAACACAAGTCGGACAAGGACTCCAAAGGAGAGAAGATCCAGGCGAAG
AAGTTGCTACAACGTCCTGACAGGGATACAAAGGACTCTGCTGCTACGGA
GAAACCCGAGAAGAAATCCAAGTCCGACAAGGCTACCAAGGAAGCTGTGA
AGGCCGCAAACAAGCAGGCTGCTAATGTTGCTGCCAAGCAAGCCGCGAAA
TCGTCTCCAGCGCAAAACTCCCCCAAGGATACGCCACAGACATCCACAGA
GCGGAAACGCGAACGTGGAAGTGTCGCGGCTGCTGCCAAGATCCTCCAGC
GCGACCTGGGGCTTGCTCCGTCCGGTCGCCGCAGGGGTGGCAAAGCTGCA
GCCGCCGATGGAGATACACCCAAGTCTGATCAGAGCGGAACTGCAACCCC
AGATACGAGCAAGAAGGAGACGCCGTCCAGACCTTCCAAAGGGGCGAACT
CGGCTCGGGACAAGTCCAAGGGCAGCAACACACAACCACCCAGTGAGCCA
TCCGAAGCAAGCACTCCAGTCAGTACTACACCTAAGCCGGGAAAGTCTGG
GAAGGGGAAGCAAGCATCGGCAGGACCGGCAGCGACCGCTACCCAAGCAT
TCCTTAAGCACGCCAACCCATCTCAGGGCGTTACCGAGCCACTCCTGGAA
GCCGCATTCGCGCCATTCGGAAAGGTTCTCAAGGTGGAGATTGATAAGAA
GAAAGGATTCGGCTACATTGATTTCGCAGAACCCGACGGACTTCAAAAGG
CCATTGCTGCTAGTCCTGTCTCGGTCGCGCAGAGTCAAGTTGTCGTGCTA
GAGAGAAAGGCCAACCCCGGTGGAGAGAAGGGCCGCGGCAAAGGCCGCAA
TGACGCAGATCCCTGCGGGCAAGTCTACAGGAGGCGTTCTCCAGATCCCC
GCCGCTGCGACTCAGAAGAATGCCTCTGCGCCGCCAAAGAAGGCTCCAAA
GCCAGCCGCGCCTCGATTGAAGCTCCTCGTCAGACGTCTGCCACCCGGAC
TAACACAAGCGGAATTCGAGACAGCGTTGGGCTCGGAATGGAAGGTTGGC
GGTGGGAAGGTCGACTGGTTCCAATACAAGCCAGGAAAGGTCTCTAAAGA
TCCAATGATCCAGCCAAACCTTCTCGGCCTTCGCGTGCGTATATCCATGT
CATGTCCAGCGATCACACCATCCCGCTCTCGAACAAAGTCCGCCAAACGT
CTTTCTTGGACGCCCGTAATACCTCAACCGATCCTGTCCTTTTGGGACCT
CCATCTTTGGAATTCGCACCTTATGCCAAGATTGCCGGAAACCGTTCGCG
CAAAGACGCCCGTCAAGGAACTATCGACCAAGACCCTGAGTTCATCGCTT
TTCTCGAGAGCCTCACGCAACCACTTGCCAAACCGGCTCCTGTCGAGTCT
GGCGCTGATGGGGAGGATAAGAAGGAGACGGTGACTGTTACGCCTTTGGT
GCAGTACATCAGAGAGAAGAAGGCCAACAAGGCGAAGGAATCCAGCAAAT
CTAAACACAAGTCGGACAAGGACTCCAAAGGAGAGAAGATCCAGGCGAAG
AAGTTGCTACAACGTCCTGACAGGGATACAAAGGACTCTGCTGCTACGGA
GAAACCCGAGAAGAAATCCAAGTCCGACAAGGCTACCAAGGAAGCTGTGA
AGGCCGCAAACAAGCAGGCTGCTAATGTTGCTGCCAAGCAAGCCGCGAAA
TCGTCTCCAGCGCAAAACTCCCCCAAGGATACGCCACAGACATCCACAGA
GCGGAAACGCGAACGTGGAAGTGTCGCGGCTGCTGCCAAGATCCTCCAGC
GCGACCTGGGGCTTGCTCCGTCCGGTCGCCGCAGGGGTGGCAAAGCTGCA
GCCGCCGATGGAGATACACCCAAGTCTGATCAGAGCGGAACTGCAACCCC
AGATACGAGCAAGAAGGAGACGCCGTCCAGACCTTCCAAAGGGGCGAACT
CGGCTCGGGACAAGTCCAAGGGCAGCAACACACAACCACCCAGTGAGCCA
TCCGAAGCAAGCACTCCAGTCAGTACTACACCTAAGCCGGGAAAGTCTGG
GAAGGGGAAGCAAGCATCGGCAGGACCGGCAGCGACCGCTACCCAAGCAT
TCCTTAAGCACGCCAACCCATCTCAGGGCGTTACCGAGCCACTCCTGGAA
GCCGCATTCGCGCCATTCGGAAAGGTTCTCAAGGTGGAGATTGATAAGAA
GAAAGGATTCGGCTACATTGATTTCGCAGAACCCGACGGACTTCAAAAGG
CCATTGCTGCTAGTCCTGTCTCGGTCGCGCAGAGTCAAGTTGTCGTGCTA
GAGAGAAAGGCCAACCCCGGTGGAGAGAAGGGCCGCGGCAAAGGCCGCAA
TGACGCAGATCCCTGCGGGCAAGTCTACAGGAGGCGTTCTCCAGATCCCC
GCCGCTGCGACTCAGAAGAATGCCTCTGCGCCGCCAAAGAAGGCTCCAAA
GCCAGCCGCGCCTCGATTGAAGCTCCTCGTCAGACGTCTGCCACCCGGAC
TAACACAAGCGGAATTCGAGACAGCGTTGGGCTCGGAATGGAAGGTTGGC
GGTGGGAAGGTCGACTGGTTCCAATACAAGCCAGGAAAGGTCTCTAAAGA
TCCAATGATCCAGCCAAACCTTCTCGGCCTTCGCGTGCGTATATCCATGT
CATGTCCAGCGATCACACCATCCCGCTCTCGAACAAAGTCCGCCAAACGT
CTTTCTTGGACGCCCGTAATACCTCAACCGATCCTGTCCTTTTGGGACCT
CCATCTTTGGAATTCGCACCTTATGCCAAGATTGCCGGAAACCGTTCGCG
CAAAGACGCCCGTCAAGGAACTATCGACCAAGACCCTGAGTTCATCGCTT
TTCTCGAGAGCCTCACGCAACCACTTGCCAAACCGGCTCCTGTCGAGTCT
GGCGCTGATGGGGAGGATAAGAAGGAGACGGTGACTGTTACGCCTTTGGT
GCAGTACATCAGAGAGAAGAAGGCCAACAAGGCGAAGGAATCCAGCAAAT
CTAAACACAAGTCGGACAAGGACTCCAAAGGAGAGAAGATCCAGGCGAAG
AAGTTGCTACAACGTCCTGACAGGGATACAAAGGACTCTGCTGCTACGGA
GAAACCCGAGAAGAAATCCAAGTCCGACAAGGCTACCAAGGAAGCTGTGA
AGGCCGCAAACAAGCAGGCTGCTAATGTTGCTGCCAAGCAAGCCGCGAAA
TCGTCTCCAGCGCAAAACTCCCCCAAGGATACGCCACAGACATCCACAGA
GCGGAAACGCGAACGTGGAAGTGTCGCGGCTGCTGCCAAGATCCTCCAGC
GCGACCTGGGGCTTGCTCCGTCCGGTCGCCGCAGGGGTGGCAAAGCTGCA
GCCGCCGATGGAGATACACCCAAGTCTGATCAGAGCGGAACTGCAACCCC
AGATACGAGCAAGAAGGAGACGCCGTCCAGACCTTCCAAAGGGGCGAACT
CGGCTCGGGACAAGTCCAAGGGCAGCAACACACAACCACCCAGTGAGCCA
TCCGAAGCAAGCACTCCAGTCAGTACTACACCTAAGCCGGGAAAGTCTGG
GAAGGGGAAGCAAGCATCGGCAGGACCGGCAGCGACCGCTACCCAAGCAT
TCCTTAAGCACGCCAACCCATCTCAGGGCGTTACCGAGCCACTCCTGGAA
GCCGCATTCGCGCCATTCGGAAAGGTTCTCAAGGTGGAGATTGATAAGAA
GAAAGGATTCGGCTACATTGATTTCGCAGAACCCGACGGACTTCAAAAGG
CCATTGCTGCTAGTCCTGTCTCGGTCGCGCAGAGTCAAGTTGTCGTGCTA
GAGAGAAAGGCCAACCCCGGTGGAGAGAAGGGCCGCGGCAAAGGCCGCAA
TGACGCAGATCCCTGCGGGCAAGTCTACAGGAGGCGTTCTCCAGATCCCC
GCCGCTGCGACTCAGAAGAATGCCTCTGCGCCGCCAAAGAAGGCTCCAAA
GCCAGCCGCGCCTCGATTGAAGCTCCTCGTCAGACGTCTGCCACCCGGAC
TAACACAAGCGGAATTCGAGACAGCGTTGGGCTCGGAATGGAAGGTTGGC
GGTGGGAAGGTCGACTGGTTCCAATACAAGCCAGGAAAGGTCTCTAAAGA back to top
Annotated Terms
The following terms have been associated with this mRNA:
Vocabulary: Molecular Function
| Term | Definition |
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| GO:0003676 | nucleic acid binding |
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following exon feature(s) are a part of this mRNA:
Properties
| Property Name | Value |
|---|
| Note | antiSMASH:Cluster_10000171.3 |
| Note | antiSMASH:Cluster_10000171.4 |
| DBxref | InterPro:IPR035979 |
| DBxref | InterPro:IPR012677 |
| DBxref | InterPro:IPR005120 |
| DBxref | InterPro:IPR000504 |
| DBxref | PFAM:PF03467 |
| DBxref | PFAM:PF00076 |
| Product | Smg-4/UPF3 family protein |
Analyses
This mRNA is derived from or has results from the following analyses
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| NKJJ01000017.1 | supercontig | NKJJ01000017.1:846800..848434 - |
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