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CAN33_38110-T1, CAN33_38110-T1 (mRNA) Aspergillus niger FDAARGOS_311

Overview
NameCAN33_38110-T1
Unique NameCAN33_38110-T1
TypemRNA
OrganismAspergillus niger FDAARGOS_311
Sequences
The following sequences are available for this feature:

mRNA from alignment at NKJJ01000017.1:1267104..1268602+

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>CAN33_38110-T1 ID=CAN33_38110-T1|Name=CAN33_38110-T1|organism=Aspergillus niger FDAARGOS_311|type=mRNA|length=1499bp|location=Sequence derived from alignment at NKJJ01000017.1:1267104..1268602+ (Aspergillus niger FDAARGOS_311)
ATGTCTTCCACTTCCGATCGACAGTATGACGAAACGATAACTCGCCTAGT
TGAGTATGTTTATCACTACGAAGTGACCAGCGACCTCGCTATCCTACGGG
CCCGCTATGCCCTCATGGATGCTCTTGGTTGCGCGCTGGAGACTCTTCAG
CAAAGCCCCGAGTGTCGCGCTCTGATCGGCCCATACACACCAGGTCTGGT
CGCCCCTTATGGGTTCAAGCTGCCGGGCACCTGCCACCAACTTGATCCAG
TCAAGGGTGCCTTTGATATGGCAACCTTGATTCGCTTCCTGGACCACAAC
GATGCATACCCTGGTGCTGAATGGGGCCACCCGTCTGGTATGCCCGTCTG
CGGGATCTACGCTCCCAGAAGCTTGGTTGAATATAGGGCTAACCGATCGA
CAAAACAGATAACCTGGGCGCCATCTTGGCGGTCACAGATTGGCTCAGCC
GTACAGGCGCCACCAGCCAGCCACTGACCGTCCGGACGGTCCTGATCGCG
ATGATCAAAGCCTACGAGATTCAAGGCTGCTACCAGATCCGCAATGCCTT
CAACAAGGTGGGCCTAGATCATACGCTACTCGTGAAGATCGCCTCCACAG
CTGTTGTAGCTTGGTTGATGGGTCTGACGGAGAAACAAGCCGCCGTCGCG
CTCTCCCATGCGTGGGCTGATGGCCACCCTCTGCGCATTTTCCGTCAAAG
TCCTAATGCGGGGCCACGCAAGGGCTGGGCCGCTGGAGATGCCGCCATGC
GTGCTGTACACTTGTGCTTACTAGCTCGCGCCGGCCAGCCAGGCATTCCC
AGCGCGCTAACTGAGCCGGAATGGGGGTTTCTCGCTGTCAGCTTTGGGGG
CAAAGAGCTGCAGCTGCCACGTCCTTTCAAGACCCGGGTGATGGAGGAAG
TTTTCTTCAAACTCATCACTGCAGAGGGCCACGGCATCTCCGCAGTTCAG
GCGGCCATGGCGCTGGCTGAGACCATGGCCAGCAGGGGGATCGATCCTGC
TACTGAAATCAGTCGCATCGATATCCGCACGCATGAAGCGGCTGTACGCA
TCATCGACAAGCAAGGCCCGCTCACCAATGCGGCCGACCGCGATCACTGC
ATGCGGTACATGGTCTCGGTGGTGTTGTTGAAGAACGCGATCATCGAAGC
AGAGGACTACCACGATTCGAGCGTGTGGGCCCATGATCCGCGTGTTGAGG
CCCTACGCCAGCGGATCCATATGGCCGAAGACCCGCAGTTCACCTACGGC
TACCACCACAAAAAGGCGGCCGCCAGCGGACTCACCGTCTTTCTGACCAA
CGGGGAGCAGTTAGACGAAGTAGTCGTCGAATACCCAATCGGGCATCCGA
TGCACGAAGATACTTTGCCTAAGGTGCGCGCCAAGTTTGAGCGAAACATG
CAGGGCCTGTTCACGGCCGAGGAGACAAGCCGGGTGATCGACGCGATCCA
TCAGGACAAACTTCCGGTGCATCGATTGGTCGACCTGCTGGGCCGATGA
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Coding sequence (CDS) from alignment at NKJJ01000017.1:1267104..1268602+

>CAN33_38110-T1 ID=CAN33_38110-T1|Name=CAN33_38110-T1|organism=Aspergillus niger FDAARGOS_311|type=CDS|length=2856bp|location=Sequence derived from alignment at NKJJ01000017.1:1267104..1268602+ (Aspergillus niger FDAARGOS_311)
ATGTCTTCCACTTCCGATCGACAGTATGACGAAACGATAACTCGCCTAGT
TGAGTATGTTTATCACTACGAAGTGACCAGCGACCTCGCTATCCTACGGG
CCCGCTATGCCCTCATGGATGCTCTTGGTTGCGCGCTGGAGACTCTTCAG
CAAAGCCCCGAGTGTCGCGCTCTGATCGGCCCATACACACCAGGTCTGGT
CGCCCCTTATGGGTTCAAGCTGCCGGGCACCTGCCACCAACTTGATCCAG
TCAAGGGTGCCTTTGATATGGCAACCTTGATTCGCTTCCTGGACCACAAC
GATGCATACCCTGGTGCTGAATGGGGCCACCCGTCTGATAACCTGGGCGC
CATCTTGGCGGTCACAGATTGGCTCAGCCGTACAGGCGCCACCAGCCAGC
CACTGACCGTCCGGACGGTCCTGATCGCGATGATCAAAGCCTACGAGATT
CAAGGCTGCTACCAGATCCGCAATGCCTTCAACAAGGTGGGCCTAGATCA
TACGCTACTCGTGAAGATCGCCTCCACAGCTGTTGTAGCTTGGTTGATGG
GTCTGACGGAGAAACAAGCCGCCGTCGCGCTCTCCCATGCGTGGGCTGAT
GGCCACCCTCTGCGCATTTTCCGTCAAAGTCCTAATGCGGGGCCACGCAA
GGGCTGGGCCGCTGGAGATGCCGCCATGCGTGCTGTACACTTGTGCTTAC
TAGCTCGCGCCGGCCAGCCAGGCATTCCCAGCGCGCTAACTGAGCCGGAA
TGGGGGTTTCTCGCTGTCAGCTTTGGGGGCAAAGAGCTGCAGCTGCCACG
TCCTTTCAAGACCCGGGTGATGGAGGAAGTTTTCTTCAAACTCATCACTG
CAGAGGGCCACGGCATCTCCGCAGTTCAGGCGGCCATGGCGCTGGCTGAG
ACCATGGCCAGCAGGGGGATCGATCCTGCTACTGAAATCAGTCGCATCGA
TATCCGCACGCATGAAGCGGCTGTACGCATCATCGACAAGCAAGGCCCGC
TCACCAATGCGGCCGACCGCGATCACTGCATGCGGTACATGGTCTCGGTG
GTGTTGTTGAAGAACGCGATCATCGAAGCAGAGGACTACCACGATTCGAG
CGTGTGGGCCCATGATCCGCGTGTTGAGGCCCTACGCCAGCGGATCCATA
TGGCCGAAGACCCGCAGTTCACCTACGGCTACCACCACAAAAAGGCGGCC
GCCAGCGGACTCACCGTCTTTCTGACCAACGGGGAGCAGTTAGACGAAGT
AGTCGTCGAATACCCAATCGGGCATCCGATGCACGAAGATACTTTGCCTA
AGGTGCGCGCCAAGTTTGAGCGAAACATGCAGGGCCTGTTCACGGCCGAG
GAGACAAGCCGGGTGATCGACGCGATCCATCAGGACAAACTTCCGGTGCA
TCGATTGGTCGACCTGCTGGGCCGATGAATGTCTTCCACTTCCGATCGAC
AGTATGACGAAACGATAACTCGCCTAGTTGAGTATGTTTATCACTACGAA
GTGACCAGCGACCTCGCTATCCTACGGGCCCGCTATGCCCTCATGGATGC
TCTTGGTTGCGCGCTGGAGACTCTTCAGCAAAGCCCCGAGTGTCGCGCTC
TGATCGGCCCATACACACCAGGTCTGGTCGCCCCTTATGGGTTCAAGCTG
CCGGGCACCTGCCACCAACTTGATCCAGTCAAGGGTGCCTTTGATATGGC
AACCTTGATTCGCTTCCTGGACCACAACGATGCATACCCTGGTGCTGAAT
GGGGCCACCCGTCTGATAACCTGGGCGCCATCTTGGCGGTCACAGATTGG
CTCAGCCGTACAGGCGCCACCAGCCAGCCACTGACCGTCCGGACGGTCCT
GATCGCGATGATCAAAGCCTACGAGATTCAAGGCTGCTACCAGATCCGCA
ATGCCTTCAACAAGGTGGGCCTAGATCATACGCTACTCGTGAAGATCGCC
TCCACAGCTGTTGTAGCTTGGTTGATGGGTCTGACGGAGAAACAAGCCGC
CGTCGCGCTCTCCCATGCGTGGGCTGATGGCCACCCTCTGCGCATTTTCC
GTCAAAGTCCTAATGCGGGGCCACGCAAGGGCTGGGCCGCTGGAGATGCC
GCCATGCGTGCTGTACACTTGTGCTTACTAGCTCGCGCCGGCCAGCCAGG
CATTCCCAGCGCGCTAACTGAGCCGGAATGGGGGTTTCTCGCTGTCAGCT
TTGGGGGCAAAGAGCTGCAGCTGCCACGTCCTTTCAAGACCCGGGTGATG
GAGGAAGTTTTCTTCAAACTCATCACTGCAGAGGGCCACGGCATCTCCGC
AGTTCAGGCGGCCATGGCGCTGGCTGAGACCATGGCCAGCAGGGGGATCG
ATCCTGCTACTGAAATCAGTCGCATCGATATCCGCACGCATGAAGCGGCT
GTACGCATCATCGACAAGCAAGGCCCGCTCACCAATGCGGCCGACCGCGA
TCACTGCATGCGGTACATGGTCTCGGTGGTGTTGTTGAAGAACGCGATCA
TCGAAGCAGAGGACTACCACGATTCGAGCGTGTGGGCCCATGATCCGCGT
GTTGAGGCCCTACGCCAGCGGATCCATATGGCCGAAGACCCGCAGTTCAC
CTACGGCTACCACCACAAAAAGGCGGCCGCCAGCGGACTCACCGTCTTTC
TGACCAACGGGGAGCAGTTAGACGAAGTAGTCGTCGAATACCCAATCGGG
CATCCGATGCACGAAGATACTTTGCCTAAGGTGCGCGCCAAGTTTGAGCG
AAACATGCAGGGCCTGTTCACGGCCGAGGAGACAAGCCGGGTGATCGACG
CGATCCATCAGGACAAACTTCCGGTGCATCGATTGGTCGACCTGCTGGGC
CGATGA
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Annotated Terms
The following terms have been associated with this mRNA:
Vocabulary: Molecular Function
TermDefinition
GO:0016829lyase activity
GO:00475472-methylcitrate dehydratase activity
GO:00515372 iron, 2 sulfur cluster binding
Vocabulary: Biological Process
TermDefinition
GO:0019629propionate catabolic process, 2-methylcitrate cycle
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
CAN33_38110CAN33_38110Aspergillus niger FDAARGOS_311gene


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CAN33_38110-T1.exon1CAN33_38110-T1.exon1Aspergillus niger FDAARGOS_311exon
CAN33_38110-T1.exon2CAN33_38110-T1.exon2Aspergillus niger FDAARGOS_311exon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CAN33_38110-T1.cdsCAN33_38110-T1.cdsAspergillus niger FDAARGOS_311CDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
CAN33_38110-T1CAN33_38110-T1-proteinAspergillus niger FDAARGOS_311polypeptide


Properties
Property NameValue
NoteEggNog:ENOG41
DBxrefInterPro:IPR036148
DBxrefInterPro:IPR005656
DBxrefInterPro:IPR042188
DBxrefInterPro:IPR042183
DBxrefInterPro:IPR012705
DBxrefPFAM:PF03972
Product2-methylcitrate dehydratase
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Aspergillus niger FDAARGOS_311 whole genome analysis2021-11-01
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
NKJJ01000017.1supercontigNKJJ01000017.1:1267104..1268602 +
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