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Sequences
The following sequences are available for this feature:
mRNA from alignment at NKJJ01000022.1:4206030..4207078- Legend: polypeptideCDSexon Hold the cursor over a type above to highlight its positions in the sequence below. >CAN33_48840-T1 ID=CAN33_48840-T1|Name=CAN33_48840-T1|organism=Aspergillus niger FDAARGOS_311|type=mRNA|length=1049bp|location=Sequence derived from alignment at NKJJ01000022.1:4206030..4207078- (Aspergillus niger FDAARGOS_311)
ATGAAGAACCGAATCCCCTCCCTAAGGCCTCTCTGCCACCAGCGAGCGCA
AGTCCTCCCCCTCCGTCGCAACCATTCAACAAGCAAACCTCCGAATGCGC
AACCGCAACCGCGGCCGCAGCCCAACAACAAACTGCAATTCAAAGACATC
CCTGCCACAGCAGTGAACTACTACTGGGACACGCAAGCGCCGGATGAAAG
CCAGCTAGCCTACGCGGACAAAGTCTTCGCACCATCGCGCCACTCTCCAG
TCAAGCTCTGGACTCTGAGCAAGTTCCGCACGACGCCGCTCTCCTCGACG
ACCCCGGAAGTAGCGTTCCTAGGTCGGTCGAATGTTGGCAAAAGCTCCTT
GTTGAATGCCCTCATGGGGCAGGAGATATGCTGGACGTCGTCGAAACCAG
GGCGCACGCAGACGATGAACGCATTCGGAATTGGAGGGACAAAGGGCGGC
GAGTCGAAGGTAGTATTGCTTGATATGCCGGGGTACGGCAAGGGAAGTCG
ATCAGAATGGGGGGCTGAGATTATGAAGTACTTAAAGAATAGGAAGCAGT
GAGTATTACCAAATGGCATATATCACACTGGGATACAGGCTAACAAACTG
TCTACGTCTATAGACTCCGCCGCACCTTCATCCTAATCGACGGCCAGCAC
GGCATCAAGCACTCCGACGAAGGCATCCTCGAATTATTCCGCCACTACGC
CATCCCACACCAGATTATCGTCTCAAAAGTGGATAACATCATGGCGGCGA
GAACGAGCCAGCTCGCGACTGGAGTAACGGAGGAACGTCTGCTCCAGACG
CAGAAGAAGATACAGGAGCTGCGTCCTATCATCCAGCCTGTTGGTCGGGA
TGAAGGTCCTGGTGCTCTAGGCGAGATTTTGACATGCAGTTCGAAAGTCC
TCAGAACTCCTGGGAATTATTTGGGAATTAGTCCCATTCGGTGGGCTATC
TTGTCTGCTGCTGGCTATGATGGGACGATGGAGGTGAGGTCTAGTCATGG
CCAACCTGATTTGACGGGGGTGAGTATGTCCTCTGGGGCTGGTCCTTGA back to topCoding sequence (CDS) from alignment at NKJJ01000022.1:4206030..4207078- >CAN33_48840-T1 ID=CAN33_48840-T1|Name=CAN33_48840-T1|organism=Aspergillus niger FDAARGOS_311|type=CDS|length=1968bp|location=Sequence derived from alignment at NKJJ01000022.1:4206030..4207078- (Aspergillus niger FDAARGOS_311)
ACTCCGCCGCACCTTCATCCTAATCGACGGCCAGCACGGCATCAAGCACT
CCGACGAAGGCATCCTCGAATTATTCCGCCACTACGCCATCCCACACCAG
ATTATCGTCTCAAAAGTGGATAACATCATGGCGGCGAGAACGAGCCAGCT
CGCGACTGGAGTAACGGAGGAACGTCTGCTCCAGACGCAGAAGAAGATAC
AGGAGCTGCGTCCTATCATCCAGCCTGTTGGTCGGGATGAAGGTCCTGGT
GCTCTAGGCGAGATTTTGACATGCAGTTCGAAAGTCCTCAGAACTCCTGG
GAATTATTTGGGAATTAGTCCCATTCGGTGGGCTATCTTGTCTGCTGCTG
GCTATGATGGGACGATGGAGGTGAGGTCTAGTCATGGCCAACCTGATTTG
ACGGGGGTGAGTATGTCCTCTGGGGCTGGTCCTTGAATGAAGAACCGAAT
CCCCTCCCTAAGGCCTCTCTGCCACCAGCGAGCGCAAGTCCTCCCCCTCC
GTCGCAACCATTCAACAAGCAAACCTCCGAATGCGCAACCGCAACCGCGG
CCGCAGCCCAACAACAAACTGCAATTCAAAGACATCCCTGCCACAGCAGT
GAACTACTACTGGGACACGCAAGCGCCGGATGAAAGCCAGCTAGCCTACG
CGGACAAAGTCTTCGCACCATCGCGCCACTCTCCAGTCAAGCTCTGGACT
CTGAGCAAGTTCCGCACGACGCCGCTCTCCTCGACGACCCCGGAAGTAGC
GTTCCTAGGTCGGTCGAATGTTGGCAAAAGCTCCTTGTTGAATGCCCTCA
TGGGGCAGGAGATATGCTGGACGTCGTCGAAACCAGGGCGCACGCAGACG
ATGAACGCATTCGGAATTGGAGGGACAAAGGGCGGCGAGTCGAAGGTAGT
ATTGCTTGATATGCCGGGGTACGGCAAGGGAAGTCGATCAGAATGGGGGG
CTGAGATTATGAAGTACTTAAAGAATAGGAAGCAACTCCGCCGCACCTTC
ATCCTAATCGACGGCCAGCACGGCATCAAGCACTCCGACGAAGGCATCCT
CGAATTATTCCGCCACTACGCCATCCCACACCAGATTATCGTCTCAAAAG
TGGATAACATCATGGCGGCGAGAACGAGCCAGCTCGCGACTGGAGTAACG
GAGGAACGTCTGCTCCAGACGCAGAAGAAGATACAGGAGCTGCGTCCTAT
CATCCAGCCTGTTGGTCGGGATGAAGGTCCTGGTGCTCTAGGCGAGATTT
TGACATGCAGTTCGAAAGTCCTCAGAACTCCTGGGAATTATTTGGGAATT
AGTCCCATTCGGTGGGCTATCTTGTCTGCTGCTGGCTATGATGGGACGAT
GGAGGTGAGGTCTAGTCATGGCCAACCTGATTTGACGGGGGTGAGTATGT
CCTCTGGGGCTGGTCCTTGAATGAAGAACCGAATCCCCTCCCTAAGGCCT
CTCTGCCACCAGCGAGCGCAAGTCCTCCCCCTCCGTCGCAACCATTCAAC
AAGCAAACCTCCGAATGCGCAACCGCAACCGCGGCCGCAGCCCAACAACA
AACTGCAATTCAAAGACATCCCTGCCACAGCAGTGAACTACTACTGGGAC
ACGCAAGCGCCGGATGAAAGCCAGCTAGCCTACGCGGACAAAGTCTTCGC
ACCATCGCGCCACTCTCCAGTCAAGCTCTGGACTCTGAGCAAGTTCCGCA
CGACGCCGCTCTCCTCGACGACCCCGGAAGTAGCGTTCCTAGGTCGGTCG
AATGTTGGCAAAAGCTCCTTGTTGAATGCCCTCATGGGGCAGGAGATATG
CTGGACGTCGTCGAAACCAGGGCGCACGCAGACGATGAACGCATTCGGAA
TTGGAGGGACAAAGGGCGGCGAGTCGAAGGTAGTATTGCTTGATATGCCG
GGGTACGGCAAGGGAAGTCGATCAGAATGGGGGGCTGAGATTATGAAGTA
CTTAAAGAATAGGAAGCA back to top
Annotated Terms
The following terms have been associated with this mRNA:
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0005525 | GTP binding |
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following exon feature(s) are a part of this mRNA:
Properties
| Property Name | Value |
|---|
| DBxref | InterPro:IPR027417 |
| DBxref | InterPro:IPR030393 |
| DBxref | InterPro:IPR019987 |
| DBxref | InterPro:IPR006073 |
| DBxref | PFAM:PF01926 |
| Product | ribosome biogenesis GTP-binding protein YsxC |
Analyses
This mRNA is derived from or has results from the following analyses
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| NKJJ01000022.1 | supercontig | NKJJ01000022.1:4206030..4207078 - |
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