You are here

Home

ASPNIDRAFT_172232-T1, ASPNIDRAFT_172232-T1 (mRNA) Aspergillus niger ATCC 1015

Overview
NameASPNIDRAFT_172232-T1
Unique NameASPNIDRAFT_172232-T1
TypemRNA
OrganismAspergillus niger ATCC 1015
Sequences
The following sequences are available for this feature:

mRNA from alignment at ACJE01000004.1:440677..441895+

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>ASPNIDRAFT_172232-T1 ID=ASPNIDRAFT_172232-T1|Name=ASPNIDRAFT_172232-T1|organism=Aspergillus niger ATCC 1015|type=mRNA|length=1219bp|location=Sequence derived from alignment at ACJE01000004.1:440677..441895+ (Aspergillus niger ATCC 1015)
ATGGGAGGCACAAGTCTCGCACAAAAGCCTCAGATGGGCTGGAACTCATG
GAACGCATTCAAAGCGACGGTCAACTATACGATAGTTCAAGAAGTTATTT
CGCTGTTCGATACGCTTGGGCTGAAAGAGGCGGGCTACGAGTACGTGCTG
CTTGATGATGGATGGGCAAGTTACAATCGCACGTCCGACGGGTATCTTCA
AGCCAATGCAACATCCTTTCCTCAGGGTATTAAGGCACTGGCGCAAGAGG
TGCACGGTAAGGGCCTAAAACTAGGCCTTTATGGAGATAGTGGTCATTAC
ACCTGTGCGTGGAGACCGGGAAGCTGGGGATACGAAGAGCGAGACGCTCA
AACGTTCGCGGGCTGGGGCGTCGACTACCTCAAGTACGACAATTGTGGCG
GATTTCAGTCGATGACAGAGGCCCCTCAAATACGCTTTGGGGCAATGAAG
AATGCTCTCGCGCTTTCGGGTCGAGATATCTTCTATTCCGTGTGTGGGTG
GGGTTATCAGTTTCCCTGGCACTGGGGAGGAGGTGAGATACACCCCGCAA
ATCAACCAATCTTCTACCTTAAGATACTCATTCCACCTGCCTGCAGATAT
CGGTCACTCATACAGAATGTCAGGCGACATTACAACAAGCTTCACCAACG
AAACTGAGTGCCAGTGCAAGACCGCCTACTGTCTCAATACCGGGTATGCC
GGTTGCTCAGTACTGACCATCATCAACAAAATGAAAGAAATCAGCCAATA
TCAGACGCCAGGTCATTGGTTGGATATGGACATGCTAGAAGTCGGAAATG
CAAATTTCACACTCAACCAGCAGCAGACGCACTTTGCATTCTGGGCGGCG
CTGAAGTCTCCCTTGATCATTGGTGCTGATCTCAGCAAGCTCTCCAATGA
CAGTTTAGCTGTTCTCACCAACAAGGCTATCATTTCGATCAATCAAGACG
CGCTGGGGGAGCCTGTGACGTATCGCGAAGCACATAGCAAAGAAGGTCTC
TTCCAGGTATGGGCTGGGAAGATTGAGGACGGATATGTTGTTCTGCTGCT
GAATGAGAAAAGCTATCCGCAAACTGTGTCTCTGACCTTTGCCAGTTTGG
GACTTGGCTCACCTCAGAAGGTCATTGAACTTTGGTCGGGGCAGACTTTG
CAGGATTTTAGTAAGTTCAATGGGGTTCTGGGGTCTTATCAAACTCTTGT
TTTCAAAGTGAAGACATGA
back to top

Coding sequence (CDS) from alignment at ACJE01000004.1:440677..441895+

>ASPNIDRAFT_172232-T1 ID=ASPNIDRAFT_172232-T1|Name=ASPNIDRAFT_172232-T1|organism=Aspergillus niger ATCC 1015|type=CDS|length=2310bp|location=Sequence derived from alignment at ACJE01000004.1:440677..441895+ (Aspergillus niger ATCC 1015)
ATGGGAGGCACAAGTCTCGCACAAAAGCCTCAGATGGGCTGGAACTCATG
GAACGCATTCAAAGCGACGGTCAACTATACGATAGTTCAAGAAGTTATTT
CGCTGTTCGATACGCTTGGGCTGAAAGAGGCGGGCTACGAGTACGTGCTG
CTTGATGATGGATGGGCAAGTTACAATCGCACGTCCGACGGGTATCTTCA
AGCCAATGCAACATCCTTTCCTCAGGGTATTAAGGCACTGGCGCAAGAGG
TGCACGGTAAGGGCCTAAAACTAGGCCTTTATGGAGATAGTGGTCATTAC
ACCTGTGCGTGGAGACCGGGAAGCTGGGGATACGAAGAGCGAGACGCTCA
AACGTTCGCGGGCTGGGGCGTCGACTACCTCAAGTACGACAATTGTGGCG
GATTTCAGTCGATGACAGAGGCCCCTCAAATACGCTTTGGGGCAATGAAG
AATGCTCTCGCGCTTTCGGGTCGAGATATCTTCTATTCCGTGTGTGGGTG
GGGTTATCAGTTTCCCTGGCACTGGGGAGGAGATATCGGTCACTCATACA
GAATGTCAGGCGACATTACAACAAGCTTCACCAACGAAACTGAGTGCCAG
TGCAAGACCGCCTACTGTCTCAATACCGGGTATGCCGGTTGCTCAGTACT
GACCATCATCAACAAAATGAAAGAAATCAGCCAATATCAGACGCCAGGTC
ATTGGTTGGATATGGACATGCTAGAAGTCGGAAATGCAAATTTCACACTC
AACCAGCAGCAGACGCACTTTGCATTCTGGGCGGCGCTGAAGTCTCCCTT
GATCATTGGTGCTGATCTCAGCAAGCTCTCCAATGACAGTTTAGCTGTTC
TCACCAACAAGGCTATCATTTCGATCAATCAAGACGCGCTGGGGGAGCCT
GTGACGTATCGCGAAGCACATAGCAAAGAAGGTCTCTTCCAGGTATGGGC
TGGGAAGATTGAGGACGGATATGTTGTTCTGCTGCTGAATGAGAAAAGCT
ATCCGCAAACTGTGTCTCTGACCTTTGCCAGTTTGGGACTTGGCTCACCT
CAGAAGGTCATTGAACTTTGGTCGGGGCAGACTTTGCAGGATTTTAGTAA
GTTCAATGGGGTTCTGGGGTCTTATCAAACTCTTGTTTTCAAAGTGAAGA
CATGAATGGGAGGCACAAGTCTCGCACAAAAGCCTCAGATGGGCTGGAAC
TCATGGAACGCATTCAAAGCGACGGTCAACTATACGATAGTTCAAGAAGT
TATTTCGCTGTTCGATACGCTTGGGCTGAAAGAGGCGGGCTACGAGTACG
TGCTGCTTGATGATGGATGGGCAAGTTACAATCGCACGTCCGACGGGTAT
CTTCAAGCCAATGCAACATCCTTTCCTCAGGGTATTAAGGCACTGGCGCA
AGAGGTGCACGGTAAGGGCCTAAAACTAGGCCTTTATGGAGATAGTGGTC
ATTACACCTGTGCGTGGAGACCGGGAAGCTGGGGATACGAAGAGCGAGAC
GCTCAAACGTTCGCGGGCTGGGGCGTCGACTACCTCAAGTACGACAATTG
TGGCGGATTTCAGTCGATGACAGAGGCCCCTCAAATACGCTTTGGGGCAA
TGAAGAATGCTCTCGCGCTTTCGGGTCGAGATATCTTCTATTCCGTGTGT
GGGTGGGGTTATCAGTTTCCCTGGCACTGGGGAGGAGATATCGGTCACTC
ATACAGAATGTCAGGCGACATTACAACAAGCTTCACCAACGAAACTGAGT
GCCAGTGCAAGACCGCCTACTGTCTCAATACCGGGTATGCCGGTTGCTCA
GTACTGACCATCATCAACAAAATGAAAGAAATCAGCCAATATCAGACGCC
AGGTCATTGGTTGGATATGGACATGCTAGAAGTCGGAAATGCAAATTTCA
CACTCAACCAGCAGCAGACGCACTTTGCATTCTGGGCGGCGCTGAAGTCT
CCCTTGATCATTGGTGCTGATCTCAGCAAGCTCTCCAATGACAGTTTAGC
TGTTCTCACCAACAAGGCTATCATTTCGATCAATCAAGACGCGCTGGGGG
AGCCTGTGACGTATCGCGAAGCACATAGCAAAGAAGGTCTCTTCCAGGTA
TGGGCTGGGAAGATTGAGGACGGATATGTTGTTCTGCTGCTGAATGAGAA
AAGCTATCCGCAAACTGTGTCTCTGACCTTTGCCAGTTTGGGACTTGGCT
CACCTCAGAAGGTCATTGAACTTTGGTCGGGGCAGACTTTGCAGGATTTT
AGTAAGTTCAATGGGGTTCTGGGGTCTTATCAAACTCTTGTTTTCAAAGT
GAAGACATGA
back to top
Annotated Terms
The following terms have been associated with this mRNA:
Vocabulary: Biological Process
TermDefinition
GO:0005975carbohydrate metabolic process
Vocabulary: Molecular Function
TermDefinition
GO:0003824catalytic activity
GO:0004553hydrolase activity, hydrolyzing O-glycosyl compounds
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
ASPNIDRAFT_172232ASPNIDRAFT_172232Aspergillus niger ATCC 1015gene


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
ASPNIDRAFT_172232-T1.exon1ASPNIDRAFT_172232-T1.exon1Aspergillus niger ATCC 1015exon
ASPNIDRAFT_172232-T1.exon2ASPNIDRAFT_172232-T1.exon2Aspergillus niger ATCC 1015exon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
ASPNIDRAFT_172232-T1.cdsASPNIDRAFT_172232-T1.cdsAspergillus niger ATCC 1015CDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
ASPNIDRAFT_172232-T1ASPNIDRAFT_172232-T1-proteinAspergillus niger ATCC 1015polypeptide


Properties
Property NameValue
NoteantiSMASH:Cluster_10000041.1
DBxrefInterPro:IPR017853
DBxrefInterPro:IPR041233
DBxrefInterPro:IPR013785
DBxrefInterPro:IPR013780
DBxrefInterPro:IPR002241
DBxrefPFAM:PF17801
DBxrefPFAM:PF16499
Productalpha-galactosidase
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Aspergillus niger ATCC 1015 whole genome analysis2021-11-01
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ACJE01000004.1supercontigACJE01000004.1:440677..441895 +
Powered by Drupal