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Sequences
The following sequences are available for this feature:
mRNA from alignment at ACJE01000004.1:1855416..1856599+ Legend: exonpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >ASPNIDRAFT_172862-T1 ID=ASPNIDRAFT_172862-T1|Name=ASPNIDRAFT_172862-T1|organism=Aspergillus niger ATCC 1015|type=mRNA|length=1184bp|location=Sequence derived from alignment at ACJE01000004.1:1855416..1856599+ (Aspergillus niger ATCC 1015)
ATGCCTGAGCTAGCGGAAGTCTCGCGTATAGTCCATTTCCTTCGTCAACA
TCTTGTCGGCAAAACGCTTTCCAAGGTGTCAGTGCAAAACGATGACATTA
TCTACGGCAAAGCCGGCACTACTGCTGCCGAGTTTCAGAAGGCAATGGAA
GGGAAGAAAGTTACTGGTGCCGGACAGCAGGGCAAGTACTTCTGGATTGC
TATGTCATCACCACCCCATGCGGTTATGCATTTCGGTATGGCGGGCTGGC
TGAAAATCCGGGATGCCGACACCTATTACTACCGGACAGACAAACCTGGA
GATAAGGAGTGGCCGCCAAAATACTGGAAATTCTTGCTCGAAACCGAGGG
AGATCCAAAGACAGAAGCTGCTTTTGTTGACTTTCGCCGACTGGGCAGAA
TACGCCTGGTAGACTGTCCCGCGGAGGAAATCCGTAACTACAGCCCTCTG
AAAGAGAATGGCCCAGATCCTGTCGCCGATAAAGACATTGTGTCGGAGGA
GTGGCTAGCAAAGAAGCTCCGAAGCAAGAAGGTACCTGTGAAGGCGCTGC
TCCTTGATCAGGCGAATATCAGCGGAATAGGCAACTGGATGGGGTATGTT
CCTTAAGTCTCCCACCATGACTAATTATATCTAGCTGACTGCTTTCTAGC
GATGAGATCCTCTACCATGCTAAAATACACCCTGAGCAATACAGCAACAC
CTTGAATGACGACCAGATTAGAGAGCTGCACTCAGCGATACATTATATCT
GTTCCACCTCCGTAGAGCTTCTAGCAGATTCGGAGAAATTTCCAGCTGAC
TGGCTGTTCAAACATCGGTGGAGTAAAGGCAAGAAGAACACGCCATCTGT
GCTGCCAAACGGAGAAAAGATTACCTTTCTCACGGTAGGGGGCAGAACCA
GCGCAGTGGTTCCAAGTGTGCAGAAAAAGACTGGGCCAGTAGCCAAGGAC
GTCAGCAGTGAAGACGCCAGCAATGCGCCGGCAAACTCGAAGCGAAAGCG
GGCTTCAGTGAAAAAGGAGGAGAGCGAGCCGGAAGCTAGCGAAGAGGATA
CGAAGCCCAAGAAGACCGGGCCCAAAAGGCAAAGCAGAACTTCTGTCAAG
AAGGAAGACATCGATGAGACGGAGACTAAGCCGGTAGAAGAACAGCAAAC
TACCAGGAGACGCTCGGGCCGACTTCGAAAGTAG back to topCoding sequence (CDS) from alignment at ACJE01000004.1:1855416..1856599+ >ASPNIDRAFT_172862-T1 ID=ASPNIDRAFT_172862-T1|Name=ASPNIDRAFT_172862-T1|organism=Aspergillus niger ATCC 1015|type=CDS|length=2256bp|location=Sequence derived from alignment at ACJE01000004.1:1855416..1856599+ (Aspergillus niger ATCC 1015)
ATGCCTGAGCTAGCGGAAGTCTCGCGTATAGTCCATTTCCTTCGTCAACA
TCTTGTCGGCAAAACGCTTTCCAAGGTGTCAGTGCAAAACGATGACATTA
TCTACGGCAAAGCCGGCACTACTGCTGCCGAGTTTCAGAAGGCAATGGAA
GGGAAGAAAGTTACTGGTGCCGGACAGCAGGGCAAGTACTTCTGGATTGC
TATGTCATCACCACCCCATGCGGTTATGCATTTCGGTATGGCGGGCTGGC
TGAAAATCCGGGATGCCGACACCTATTACTACCGGACAGACAAACCTGGA
GATAAGGAGTGGCCGCCAAAATACTGGAAATTCTTGCTCGAAACCGAGGG
AGATCCAAAGACAGAAGCTGCTTTTGTTGACTTTCGCCGACTGGGCAGAA
TACGCCTGGTAGACTGTCCCGCGGAGGAAATCCGTAACTACAGCCCTCTG
AAAGAGAATGGCCCAGATCCTGTCGCCGATAAAGACATTGTGTCGGAGGA
GTGGCTAGCAAAGAAGCTCCGAAGCAAGAAGGTACCTGTGAAGGCGCTGC
TCCTTGATCAGGCGAATATCAGCGGAATAGGCAACTGGATGGGCGATGAG
ATCCTCTACCATGCTAAAATACACCCTGAGCAATACAGCAACACCTTGAA
TGACGACCAGATTAGAGAGCTGCACTCAGCGATACATTATATCTGTTCCA
CCTCCGTAGAGCTTCTAGCAGATTCGGAGAAATTTCCAGCTGACTGGCTG
TTCAAACATCGGTGGAGTAAAGGCAAGAAGAACACGCCATCTGTGCTGCC
AAACGGAGAAAAGATTACCTTTCTCACGGTAGGGGGCAGAACCAGCGCAG
TGGTTCCAAGTGTGCAGAAAAAGACTGGGCCAGTAGCCAAGGACGTCAGC
AGTGAAGACGCCAGCAATGCGCCGGCAAACTCGAAGCGAAAGCGGGCTTC
AGTGAAAAAGGAGGAGAGCGAGCCGGAAGCTAGCGAAGAGGATACGAAGC
CCAAGAAGACCGGGCCCAAAAGGCAAAGCAGAACTTCTGTCAAGAAGGAA
GACATCGATGAGACGGAGACTAAGCCGGTAGAAGAACAGCAAACTACCAG
GAGACGCTCGGGCCGACTTCGAAAGTAGATGCCTGAGCTAGCGGAAGTCT
CGCGTATAGTCCATTTCCTTCGTCAACATCTTGTCGGCAAAACGCTTTCC
AAGGTGTCAGTGCAAAACGATGACATTATCTACGGCAAAGCCGGCACTAC
TGCTGCCGAGTTTCAGAAGGCAATGGAAGGGAAGAAAGTTACTGGTGCCG
GACAGCAGGGCAAGTACTTCTGGATTGCTATGTCATCACCACCCCATGCG
GTTATGCATTTCGGTATGGCGGGCTGGCTGAAAATCCGGGATGCCGACAC
CTATTACTACCGGACAGACAAACCTGGAGATAAGGAGTGGCCGCCAAAAT
ACTGGAAATTCTTGCTCGAAACCGAGGGAGATCCAAAGACAGAAGCTGCT
TTTGTTGACTTTCGCCGACTGGGCAGAATACGCCTGGTAGACTGTCCCGC
GGAGGAAATCCGTAACTACAGCCCTCTGAAAGAGAATGGCCCAGATCCTG
TCGCCGATAAAGACATTGTGTCGGAGGAGTGGCTAGCAAAGAAGCTCCGA
AGCAAGAAGGTACCTGTGAAGGCGCTGCTCCTTGATCAGGCGAATATCAG
CGGAATAGGCAACTGGATGGGCGATGAGATCCTCTACCATGCTAAAATAC
ACCCTGAGCAATACAGCAACACCTTGAATGACGACCAGATTAGAGAGCTG
CACTCAGCGATACATTATATCTGTTCCACCTCCGTAGAGCTTCTAGCAGA
TTCGGAGAAATTTCCAGCTGACTGGCTGTTCAAACATCGGTGGAGTAAAG
GCAAGAAGAACACGCCATCTGTGCTGCCAAACGGAGAAAAGATTACCTTT
CTCACGGTAGGGGGCAGAACCAGCGCAGTGGTTCCAAGTGTGCAGAAAAA
GACTGGGCCAGTAGCCAAGGACGTCAGCAGTGAAGACGCCAGCAATGCGC
CGGCAAACTCGAAGCGAAAGCGGGCTTCAGTGAAAAAGGAGGAGAGCGAG
CCGGAAGCTAGCGAAGAGGATACGAAGCCCAAGAAGACCGGGCCCAAAAG
GCAAAGCAGAACTTCTGTCAAGAAGGAAGACATCGATGAGACGGAGACTA
AGCCGGTAGAAGAACAGCAAACTACCAGGAGACGCTCGGGCCGACTTCGA
AAGTAG back to top
Annotated Terms
The following terms have been associated with this mRNA:
Vocabulary: Biological Process
| Term | Definition |
|---|
| GO:0006289 | nucleotide-excision repair |
| GO:0006284 | base-excision repair |
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0003676 | nucleic acid binding |
| GO:0003684 | damaged DNA binding |
| GO:0016799 | hydrolase activity, hydrolyzing N-glycosyl compounds |
| GO:0003906 | DNA-(apurinic or apyrimidinic site) endonuclease activity |
| GO:0008270 | zinc ion binding |
Relationships
This mRNA is a part of the following gene feature(s):
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Properties
| Property Name | Value |
|---|
| DBxref | InterPro:IPR010979 |
| DBxref | InterPro:IPR035937 |
| DBxref | InterPro:IPR015886 |
| DBxref | InterPro:IPR012319 |
| DBxref | PFAM:PF06831 |
| DBxref | PFAM:PF01149 |
| Product | hypothetical protein |
Analyses
This mRNA is derived from or has results from the following analyses
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| ACJE01000004.1 | supercontig | ACJE01000004.1:1855416..1856599 + |
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