You are here

Home

ASPNIDRAFT_172944-T1, ASPNIDRAFT_172944-T1 (mRNA) Aspergillus niger ATCC 1015

Overview
NameASPNIDRAFT_172944-T1
Unique NameASPNIDRAFT_172944-T1
TypemRNA
OrganismAspergillus niger ATCC 1015
Sequences
The following sequences are available for this feature:

mRNA from alignment at ACJE01000010.1:3145430..3146752-

Legend: CDSpolypeptideexon
Hold the cursor over a type above to highlight its positions in the sequence below.
>ASPNIDRAFT_172944-T1 ID=ASPNIDRAFT_172944-T1|Name=ASPNIDRAFT_172944-T1|organism=Aspergillus niger ATCC 1015|type=mRNA|length=1323bp|location=Sequence derived from alignment at ACJE01000010.1:3145430..3146752- (Aspergillus niger ATCC 1015)
ATGTCTGTCTTCAAGGCATCATTCCTATTTCTTCTTTCCTCCTCACTAGT
CCACGGGGTTCCACACTCCAGCAGAGCATCTCGGAGCCAACAATGCGTGG
TTCCGTCCAAATACCAGGCATCGAATGGGACGGCTGATGACTCGGCTGCT
GTCTCCCAGGCCTTTGCACAATGCGCGACTGACTCGGTTATTATTTTCGA
GGAGGGTGTCAACTATAACATCTTTCAGCCGATCACCGCCACCAACCTCA
GCAATGTGGAAATCCGGATGCACGGCAACCTGCATCTGCCACAGAATATC
ACTGCGGTGCAGAATATAGTCAGTGACGGTACTTCTACATGGTTTACCCT
AGAAGGACCAAAAGTGGACTGGATTGGTCCTGAAGACGTGAACAATGGTT
GGATTGACTCGTACGGACAACCGTGGTGGGATGCGAACCCTGCAGGTAGT
TCAGGCATCGATAACCGTCCGCATCTCATGAGCTTCAAGTCTAGCCAAGC
CACTATGAAATACTTCAGGTCTAGGAAGCCCATCGCCTGGAATGTCAAAC
TGCATGGACAAGACATTACAGTCAGCCACGCTATTATCGACGCTACCTCG
ACAGGTAGCTTCCCATTCAACACTGACGGTTTCGATGTTGAGGGTACCAA
TATCCAGATCACCGACAGTATCATGTACAACGGCGACGATGCGATTGCAG
TAGGCGCGGACTCGCACGACATACTTTTCACAAGAAACACCATCGGCTAC
CAGACTCACGGCATGAGCATTGGATCGCTGGGAAAGGATCCCACAGACTT
CGCCAATATCAGCAACATCCGCTTTGACGATGTGACTGTTGTCGATGGGC
TCTACGCAGCACGCTTCAAGTCATGGAGCGGAGGGACCGGACTCGTCAAG
AATGTGACCTGGAACAATATTAGAGTCTTCAACGTGACGTTCCCGATCTT
TGTGACTCAGAGTTATAGCGACCAAGGCGCCTCCCGGTCTGGAACTGTCA
ATGCTAGTTCGGCTGTGATGATGGAGGATTTTACCTGGTCTGACTTTGCT
GGCTCGATCAATACGTACCAGCCTGGTGACGGTTCTTGCGTTTCCGACCC
TTGCTGGTACAACGTTGGGCTGCCAAATTTGAAGCATACGGAGGCCCTCA
TTATCGAATGCCATACTGCTCAATCTTGTAAGAACTTTGTGACGGACAAC
ATCCAGCTATACCCGCAGGTTCTGGAACCAGCGAGTGTGATCTGCATGAA
CGCAACGGCAGCCCTCAATCCTGATCTTGGATTTACATGTAAAAACGGGA
CCTACAGCCCATTATCTAATTAA
back to top

Coding sequence (CDS) from alignment at ACJE01000010.1:3145430..3146752-

>ASPNIDRAFT_172944-T1 ID=ASPNIDRAFT_172944-T1|Name=ASPNIDRAFT_172944-T1|organism=Aspergillus niger ATCC 1015|type=CDS|length=1323bp|location=Sequence derived from alignment at ACJE01000010.1:3145430..3146752- (Aspergillus niger ATCC 1015)
ATGTCTGTCTTCAAGGCATCATTCCTATTTCTTCTTTCCTCCTCACTAGT
CCACGGGGTTCCACACTCCAGCAGAGCATCTCGGAGCCAACAATGCGTGG
TTCCGTCCAAATACCAGGCATCGAATGGGACGGCTGATGACTCGGCTGCT
GTCTCCCAGGCCTTTGCACAATGCGCGACTGACTCGGTTATTATTTTCGA
GGAGGGTGTCAACTATAACATCTTTCAGCCGATCACCGCCACCAACCTCA
GCAATGTGGAAATCCGGATGCACGGCAACCTGCATCTGCCACAGAATATC
ACTGCGGTGCAGAATATAGTCAGTGACGGTACTTCTACATGGTTTACCCT
AGAAGGACCAAAAGTGGACTGGATTGGTCCTGAAGACGTGAACAATGGTT
GGATTGACTCGTACGGACAACCGTGGTGGGATGCGAACCCTGCAGGTAGT
TCAGGCATCGATAACCGTCCGCATCTCATGAGCTTCAAGTCTAGCCAAGC
CACTATGAAATACTTCAGGTCTAGGAAGCCCATCGCCTGGAATGTCAAAC
TGCATGGACAAGACATTACAGTCAGCCACGCTATTATCGACGCTACCTCG
ACAGGTAGCTTCCCATTCAACACTGACGGTTTCGATGTTGAGGGTACCAA
TATCCAGATCACCGACAGTATCATGTACAACGGCGACGATGCGATTGCAG
TAGGCGCGGACTCGCACGACATACTTTTCACAAGAAACACCATCGGCTAC
CAGACTCACGGCATGAGCATTGGATCGCTGGGAAAGGATCCCACAGACTT
CGCCAATATCAGCAACATCCGCTTTGACGATGTGACTGTTGTCGATGGGC
TCTACGCAGCACGCTTCAAGTCATGGAGCGGAGGGACCGGACTCGTCAAG
AATGTGACCTGGAACAATATTAGAGTCTTCAACGTGACGTTCCCGATCTT
TGTGACTCAGAGTTATAGCGACCAAGGCGCCTCCCGGTCTGGAACTGTCA
ATGCTAGTTCGGCTGTGATGATGGAGGATTTTACCTGGTCTGACTTTGCT
GGCTCGATCAATACGTACCAGCCTGGTGACGGTTCTTGCGTTTCCGACCC
TTGCTGGTACAACGTTGGGCTGCCAAATTTGAAGCATACGGAGGCCCTCA
TTATCGAATGCCATACTGCTCAATCTTGTAAGAACTTTGTGACGGACAAC
ATCCAGCTATACCCGCAGGTTCTGGAACCAGCGAGTGTGATCTGCATGAA
CGCAACGGCAGCCCTCAATCCTGATCTTGGATTTACATGTAAAAACGGGA
CCTACAGCCCATTATCTAATTAA
back to top
Annotated Terms
The following terms have been associated with this mRNA:
Vocabulary: Biological Process
TermDefinition
GO:0005975carbohydrate metabolic process
Vocabulary: Molecular Function
TermDefinition
GO:0004650polygalacturonase activity
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
ASPNIDRAFT_172944ASPNIDRAFT_172944Aspergillus niger ATCC 1015gene


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
ASPNIDRAFT_172944-T1.cdsASPNIDRAFT_172944-T1.cdsAspergillus niger ATCC 1015CDS


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
ASPNIDRAFT_172944-T1.exon1ASPNIDRAFT_172944-T1.exon1Aspergillus niger ATCC 1015exon


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
ASPNIDRAFT_172944-T1ASPNIDRAFT_172944-T1-proteinAspergillus niger ATCC 1015polypeptide


Properties
Property NameValue
NoteSECRETED:SignalP(1-19)
NoteCAZy:GH28
DBxrefInterPro:IPR011050
DBxrefInterPro:IPR000743
DBxrefInterPro:IPR012334
DBxrefPFAM:PF00295
Producthypothetical protein
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Aspergillus niger ATCC 1015 whole genome analysis2021-11-01
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ACJE01000010.1supercontigACJE01000010.1:3145430..3146752 -
Powered by Drupal