|
|
Sequences
The following sequences are available for this feature:
mRNA from alignment at ACJE01000009.1:203523..204818- Legend: polypeptideCDSexon Hold the cursor over a type above to highlight its positions in the sequence below. >ASPNIDRAFT_180922-T1 ID=ASPNIDRAFT_180922-T1|Name=ASPNIDRAFT_180922-T1|organism=Aspergillus niger ATCC 1015|type=mRNA|length=1296bp|location=Sequence derived from alignment at ACJE01000009.1:203523..204818- (Aspergillus niger ATCC 1015)
CTCGCAGCCGGCCAACTGATTGGCCCAGTCGGTCCGACAACCCAGCTCGA
AGACAAGGATATTGAGTGCAATATTTTGGACTATGGTGGCGTTGCTGATA
ATGAGACCGATGTCGCAACTTCCATCGAGACCACGTTCACCGAATGTGTG
CTAAACAACCCCAAAAGTCGTCTTGTTATCCCCGAGGGCGACTATTTGAT
CAAGCGCAGTGTTGTTTTGAGTAATGGAACCAATTGGGCTTTCCAGCTTG
ACGGTCTGATCACCGCGGCATATGGTGGAAATTGGACAGTCGACCGTGAG
TTGATACTCCAAGGGTTTGCGGGAGAGCAAATAATAAACTCTACCATCAA
CGGCGAGGGTGACGGAAAATTCTTACTAGATGTGCTCGTCATTGTGAACG
GTATGACTGCTTAATCTTCATCCCGATGACAGATCACTAAATCCATCCCA
TTCAATGTGTGCAGCTGTCGATTTCGAATTCTATTCGTCCAACGGGCTTG
GCGCATTTCAAGGCCAAGGATATATCTATCGAAATCTGGCCAAGTGAGTT
GTTTGAAATCCTATTTCTGCACACAGCTGACGAGCCTTCAAAGCACCGAT
CGCCCTCGACTTGTGAGATTAATTTCGCCCACAAATGCTTCTGTGCATGA
TTTGATCCTTGTGGATAGCCCCAAGTTTCACATCGTGTTTGATTTTGCTG
TGAACCTGGAGGCGTACCACCTTACTATCCGTGGTGCTAACCTAGGAAGC
TATGATGGCATTGACGCCATTGGCACCAACTATTACATCCACGATAACGA
GGCAAGTAGATAGACCATAAATTCGCAATCTAGCAGTGGCTAACAATAAG
ACCGATGGTAGGTCACGAATCGTGATGAGTGTGTCTCCGTGAAAAGCCCG
TCCCATCATGCCTTAGTCGAGAATCTGGTTTGCAATCAGGCAGGATCTGG
TGTTTCAATTGGCAGTCTTAACGTATCTGCGGAAATATCTAACATTGTGA
GTCCCATCAGCTGATTTGTTCGTGACAGGTCTTGGAAACCTACTAACATG
AACCAGGAAGCTCGCAATATCAGCATTATCCAGGGCAACAACATCGCCTT
TATCAAAACGTATCCTGGAGGGTCTGGTTACGTCAAAGACGTCACCTTCG
AAAATTTCCGCTCTTTGAACAGCCTGTACGGATTGGACATCAACCAATAC
TGGCAAAACACATGGGAGCCTGATACCGGTTCCGTGACATTGAGCAACCT
TGTCTTCAAGAACTTCTCAGGTAATCTCGGCTCGTGTATCCAGTGA back to topCoding sequence (CDS) from alignment at ACJE01000009.1:203523..204818- >ASPNIDRAFT_180922-T1 ID=ASPNIDRAFT_180922-T1|Name=ASPNIDRAFT_180922-T1|organism=Aspergillus niger ATCC 1015|type=CDS|length=4935bp|location=Sequence derived from alignment at ACJE01000009.1:203523..204818- (Aspergillus niger ATCC 1015)
GAAGCTCGCAATATCAGCATTATCCAGGGCAACAACATCGCCTTTATCAA
AACGTATCCTGGAGGGTCTGGTTACGTCAAAGACGTCACCTTCGAAAATT
TCCGCTCTTTGAACAGCCTGTACGGATTGGACATCAACCAATACTGGCAA
AACACATGGGAGCCTGATACCGGTTCCGTGACATTGAGCAACCTTGTCTT
CAAGAACTTCTCAGGTAATCTCGGCTCGTGTATCCAGTGATCGAGAATCT
GGTTTGCAATCAGGCAGGATCTGGTGTTTCAATTGGCAGTCTTAACGTAT
CTGCGGAAATATCTAACATTATTAATTTCGCCCACAAATGCTTCTGTGCA
TGATTTGATCCTTGTGGATAGCCCCAAGTTTCACATCGTGTTTGATTTTG
CTGTGAACCTGGAGGCGTACCACCTTACTATCCGTGGTGCTAACCTAGGA
AGCTATGATGGCATTGACGCCATTGGCACCAACTATTACATCCACGATAA
CGAGGCAACTGTCGATTTCGAATTCTATTCGTCCAACGGGCTTGGCGCAT
TTCAAGGCCAAGGATATATCTATCGAAATCTGGCCAACTCGCAGCCGGCC
AACTGATTGGCCCAGTCGGTCCGACAACCCAGCTCGAAGACAAGGATATT
GAGTGCAATATTTTGGACTATGGTGGCGTTGCTGATAATGAGACCGATGT
CGCAACTTCCATCGAGACCACGTTCACCGAATGTGTGCTAAACAACCCCA
AAAGTCGTCTTGTTATCCCCGAGGGCGACTATTTGATCAAGCGCAGTGTT
GTTTTGAGTAATGGAACCAATTGGGCTTTCCAGCTTGACGGTCTGATCAC
CGCGGCATATGGTGGAAATTGGACAGTCGACCGTGAGTTGATACTCCAAG
GGTTTGCGGGAGAGCAAATAATAAACTCTACCATCAACGGCGAGGGTGAC
GGAAAATTCTTACTAGATGTGCTCGTCATTGTGAACGGAAGCTCGCAATA
TCAGCATTATCCAGGGCAACAACATCGCCTTTATCAAAACGTATCCTGGA
GGGTCTGGTTACGTCAAAGACGTCACCTTCGAAAATTTCCGCTCTTTGAA
CAGCCTGTACGGATTGGACATCAACCAATACTGGCAAAACACATGGGAGC
CTGATACCGGTTCCGTGACATTGAGCAACCTTGTCTTCAAGAACTTCTCA
GGTAATCTCGGCTCGTGTATCCAGTGATCGAGAATCTGGTTTGCAATCAG
GCAGGATCTGGTGTTTCAATTGGCAGTCTTAACGTATCTGCGGAAATATC
TAACATTATTAATTTCGCCCACAAATGCTTCTGTGCATGATTTGATCCTT
GTGGATAGCCCCAAGTTTCACATCGTGTTTGATTTTGCTGTGAACCTGGA
GGCGTACCACCTTACTATCCGTGGTGCTAACCTAGGAAGCTATGATGGCA
TTGACGCCATTGGCACCAACTATTACATCCACGATAACGAGGCAACTGTC
GATTTCGAATTCTATTCGTCCAACGGGCTTGGCGCATTTCAAGGCCAAGG
ATATATCTATCGAAATCTGGCCAACTCGCAGCCGGCCAACTGATTGGCCC
AGTCGGTCCGACAACCCAGCTCGAAGACAAGGATATTGAGTGCAATATTT
TGGACTATGGTGGCGTTGCTGATAATGAGACCGATGTCGCAACTTCCATC
GAGACCACGTTCACCGAATGTGTGCTAAACAACCCCAAAAGTCGTCTTGT
TATCCCCGAGGGCGACTATTTGATCAAGCGCAGTGTTGTTTTGAGTAATG
GAACCAATTGGGCTTTCCAGCTTGACGGTCTGATCACCGCGGCATATGGT
GGAAATTGGACAGTCGACCGTGAGTTGATACTCCAAGGGTTTGCGGGAGA
GCAAATAATAAACTCTACCATCAACGGCGAGGGTGACGGAAAATTCTTAC
TAGATGTGCTCGTCATTGTGAACGGAAGCTCGCAATATCAGCATTATCCA
GGGCAACAACATCGCCTTTATCAAAACGTATCCTGGAGGGTCTGGTTACG
TCAAAGACGTCACCTTCGAAAATTTCCGCTCTTTGAACAGCCTGTACGGA
TTGGACATCAACCAATACTGGCAAAACACATGGGAGCCTGATACCGGTTC
CGTGACATTGAGCAACCTTGTCTTCAAGAACTTCTCAGGTAATCTCGGCT
CGTGTATCCAGTGATCGAGAATCTGGTTTGCAATCAGGCAGGATCTGGTG
TTTCAATTGGCAGTCTTAACGTATCTGCGGAAATATCTAACATTATTAAT
TTCGCCCACAAATGCTTCTGTGCATGATTTGATCCTTGTGGATAGCCCCA
AGTTTCACATCGTGTTTGATTTTGCTGTGAACCTGGAGGCGTACCACCTT
ACTATCCGTGGTGCTAACCTAGGAAGCTATGATGGCATTGACGCCATTGG
CACCAACTATTACATCCACGATAACGAGGCAACTGTCGATTTCGAATTCT
ATTCGTCCAACGGGCTTGGCGCATTTCAAGGCCAAGGATATATCTATCGA
AATCTGGCCAACTCGCAGCCGGCCAACTGATTGGCCCAGTCGGTCCGACA
ACCCAGCTCGAAGACAAGGATATTGAGTGCAATATTTTGGACTATGGTGG
CGTTGCTGATAATGAGACCGATGTCGCAACTTCCATCGAGACCACGTTCA
CCGAATGTGTGCTAAACAACCCCAAAAGTCGTCTTGTTATCCCCGAGGGC
GACTATTTGATCAAGCGCAGTGTTGTTTTGAGTAATGGAACCAATTGGGC
TTTCCAGCTTGACGGTCTGATCACCGCGGCATATGGTGGAAATTGGACAG
TCGACCGTGAGTTGATACTCCAAGGGTTTGCGGGAGAGCAAATAATAAAC
TCTACCATCAACGGCGAGGGTGACGGAAAATTCTTACTAGATGTGCTCGT
CATTGTGAACGGAAGCTCGCAATATCAGCATTATCCAGGGCAACAACATC
GCCTTTATCAAAACGTATCCTGGAGGGTCTGGTTACGTCAAAGACGTCAC
CTTCGAAAATTTCCGCTCTTTGAACAGCCTGTACGGATTGGACATCAACC
AATACTGGCAAAACACATGGGAGCCTGATACCGGTTCCGTGACATTGAGC
AACCTTGTCTTCAAGAACTTCTCAGGTAATCTCGGCTCGTGTATCCAGTG
ATCGAGAATCTGGTTTGCAATCAGGCAGGATCTGGTGTTTCAATTGGCAG
TCTTAACGTATCTGCGGAAATATCTAACATTATTAATTTCGCCCACAAAT
GCTTCTGTGCATGATTTGATCCTTGTGGATAGCCCCAAGTTTCACATCGT
GTTTGATTTTGCTGTGAACCTGGAGGCGTACCACCTTACTATCCGTGGTG
CTAACCTAGGAAGCTATGATGGCATTGACGCCATTGGCACCAACTATTAC
ATCCACGATAACGAGGCAACTGTCGATTTCGAATTCTATTCGTCCAACGG
GCTTGGCGCATTTCAAGGCCAAGGATATATCTATCGAAATCTGGCCAACT
CGCAGCCGGCCAACTGATTGGCCCAGTCGGTCCGACAACCCAGCTCGAAG
ACAAGGATATTGAGTGCAATATTTTGGACTATGGTGGCGTTGCTGATAAT
GAGACCGATGTCGCAACTTCCATCGAGACCACGTTCACCGAATGTGTGCT
AAACAACCCCAAAAGTCGTCTTGTTATCCCCGAGGGCGACTATTTGATCA
AGCGCAGTGTTGTTTTGAGTAATGGAACCAATTGGGCTTTCCAGCTTGAC
GGTCTGATCACCGCGGCATATGGTGGAAATTGGACAGTCGACCGTGAGTT
GATACTCCAAGGGTTTGCGGGAGAGCAAATAATAAACTCTACCATCAACG
GCGAGGGTGACGGAAAATTCTTACTAGATGTGCTCGTCATTGTGAACGGA
AGCTCGCAATATCAGCATTATCCAGGGCAACAACATCGCCTTTATCAAAA
CGTATCCTGGAGGGTCTGGTTACGTCAAAGACGTCACCTTCGAAAATTTC
CGCTCTTTGAACAGCCTGTACGGATTGGACATCAACCAATACTGGCAAAA
CACATGGGAGCCTGATACCGGTTCCGTGACATTGAGCAACCTTGTCTTCA
AGAACTTCTCAGGTAATCTCGGCTCGTGTATCCAGTGATCGAGAATCTGG
TTTGCAATCAGGCAGGATCTGGTGTTTCAATTGGCAGTCTTAACGTATCT
GCGGAAATATCTAACATTATTAATTTCGCCCACAAATGCTTCTGTGCATG
ATTTGATCCTTGTGGATAGCCCCAAGTTTCACATCGTGTTTGATTTTGCT
GTGAACCTGGAGGCGTACCACCTTACTATCCGTGGTGCTAACCTAGGAAG
CTATGATGGCATTGACGCCATTGGCACCAACTATTACATCCACGATAACG
AGGCAACTGTCGATTTCGAATTCTATTCGTCCAACGGGCTTGGCGCATTT
CAAGGCCAAGGATATATCTATCGAAATCTGGCCAACTCGCAGCCGGCCAA
CTGATTGGCCCAGTCGGTCCGACAACCCAGCTCGAAGACAAGGATATTGA
GTGCAATATTTTGGACTATGGTGGCGTTGCTGATAATGAGACCGATGTCG
CAACTTCCATCGAGACCACGTTCACCGAATGTGTGCTAAACAACCCCAAA
AGTCGTCTTGTTATCCCCGAGGGCGACTATTTGATCAAGCGCAGTGTTGT
TTTGAGTAATGGAACCAATTGGGCTTTCCAGCTTGACGGTCTGATCACCG
CGGCATATGGTGGAAATTGGACAGTCGACCGTGAGTTGATACTCCAAGGG
TTTGCGGGAGAGCAAATAATAAACTCTACCATCAACGGCGAGGGTGACGG
AAAATTCTTACTAGATGTGCTCGTCATTGTGAACG back to top
Annotated Terms
The following terms have been associated with this mRNA:
Vocabulary: Biological Process
| Term | Definition |
|---|
| GO:0005975 | carbohydrate metabolic process |
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0004650 | polygalacturonase activity |
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following exon feature(s) are a part of this mRNA:
Properties
| Property Name | Value |
|---|
| Note | CAZy:GH28 |
| DBxref | InterPro:IPR011050 |
| DBxref | InterPro:IPR012334 |
| DBxref | InterPro:IPR000743 |
| Product | hypothetical protein |
Analyses
This mRNA is derived from or has results from the following analyses
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| ACJE01000009.1 | supercontig | ACJE01000009.1:203523..204818 - |
|
