You are here

Home

ASPNIDRAFT_187212-T1, ASPNIDRAFT_187212-T1 (mRNA) Aspergillus niger ATCC 1015

Overview
NameASPNIDRAFT_187212-T1
Unique NameASPNIDRAFT_187212-T1
TypemRNA
OrganismAspergillus niger ATCC 1015
Sequences
The following sequences are available for this feature:

mRNA from alignment at ACJE01000020.1:317090..319132-

Legend: polypeptideCDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
>ASPNIDRAFT_187212-T1 ID=ASPNIDRAFT_187212-T1|Name=ASPNIDRAFT_187212-T1|organism=Aspergillus niger ATCC 1015|type=mRNA|length=2043bp|location=Sequence derived from alignment at ACJE01000020.1:317090..319132- (Aspergillus niger ATCC 1015)
ATGTCCGACTCATTCAGCCTCCCCCTGCGCCCGCTCACCGAGAAGCCCGA
CCGCCCCGATACCCTTCCAATCGAGATCGCCCAAATCAACGCCCGATGGG
GATCTTTCCGCGACGTGAACGAAGAGACACTGCTCGCCAAGATCGAAGAG
GACAAGAACCGGGACCCATGGGAAGAGGAAGATGAGGACGAAAAACTTGC
TGAGGATGTGGACTCAACCGAGCGTCTGGAAACATTGTACAAGCGACGTG
CCGAGATCTTGCAGTTCGCTATGTAAGTAGGTGGTCTGCTGGTAGCAATG
GTGGACAATTGCGCTAATTGATTTGTTGCGGGTTGAAGGCAGGCGCATAT
GGAAGCTCTGTTCGCTTTGGATTTTGTTTCCCTTTTGCTTTCGAAGCATA
CCCCTCGCCAGGCGGAGACTTCGATGTCGGCGTTCCTGAAACAGGTTGCG
CCGCTTGGGTCGTTGAATGCGGAGATCGTCGAGCCGCCGCCGAAGTCGGA
GGCCGCTGTGCAGGATGTCAAGACTGTGTCGCGGGGTTGGAGGGCGCAGA
ACTTCAATGCCGCTGCGAATAAATTGCTCAATTCGGCGACGCGATTGGAA
GAAGAGGTCGCTTCGGAGACGAAGTACTGGGATGAAGTACTGGCGGTTAA
GGAGAAGGGTTGGAAGGTGTGCAGGTTGCCCCGGGAGAGAACTGCGCTGG
GAGTACAATATGGGTTCTTGGAAGGTAGGATGGCTACGTGCTTCTGCTGG
ACTGATGCTGACTGTGTTCCTATAGCTACGCCTATATTCCGCGACCGGGG
TCTTGCTGCTCTACGGAGGGCTGATAATGGAAGCTTAATACTGGATAAGG
GACTGGCACCACAGAAGACGAGGACGGTTCGAGTGCGTGTGAAGCACCGC
GGACAACTTACGGGATGCTCTAAAATGCCGGATCCGATCCCCGATGCAGC
GTCGGTCGAGCGCAGGATTTTGCAAGCACGCGACACAGTGTACGAGGAGG
AGCTATTCCACGAGTTGATGCGCGAAGCGCGTATCATGGGAAGTCATGGT
GTGACGACTCGCCAAAACCTGGTCCGACTGCCGATATCCGAGGACCAAGA
GATCCTGCTGGATCTGGTAGATGCGGACCGTGAAACGCCCGACGAAGACA
AGATCGAGTCAACAGAACACGACGTCCTTGCTAATGGGCTTTCACACTCA
ATTCGGATCCTGCTCGCGTATGCACACCGCCAGAACCTGCGACGCAGAAC
CCAACCGCCGCCCCCGCTCTCCCAGAAACGTCGGCTTACCCCCGAGTATC
AGCTCCTGCGCCCTGTCATGGCGTATCTCCAACACAGCTCGCACGTCCGG
TGGTTGGAGTCTTTCATGAATGATATATACCGGGTTCTGCGGGCGGCAGG
GATCGAGCGTGATTTCCACGCCGTGCCTTTTGCGTCTGTGAGCCTTCCGA
AGGTGCGGGCTGTTCCGAAGGTAGAGAGTCTGGTACAACAGTTCCTGATG
CCCTTCGAATCGACATTTTCCGGCCATCTGATCACCCCTCAAAGCTCTTT
TCGCGTGAAAATCCGCACCAACCCGGTGTCGCCGCCATTTGGCACCCACT
ACGACATTTCCATTGACCTACCTCACCACCCCGAAGTTCAGCCTCCCGGT
CGGGTTGGACTGCAGAATGAAGCAGCTGCAGCTCTCATGCATTTCGTCAA
GTTGGACATCGTGTCGGCCATCGCGCTCCAGGGCTCGAAGACGACCAAAA
ATACCACCAAGAAAGAAGGCGCCGAGGGGACTTTGACGTGGGAGGCGGCA
TATCCGCACCACGGCGAACTGCTGGCGTTTTCGACTGCTGGCCAAAGCAA
GAAGCTGAAAATCAGCCTGTCACGGGAGGAATTGAAAGTGGAAACATTTT
CACTTCGGGGACTTGAAGGGTTTGGCCGATCGGGCGGCCCCAAGGCACCA
AGTTTGCAGTCTCAGACGTGGACAGCCACTCAGACAGATTCTAAGCCTGG
TCTGATGGATTTTGTCGCGGAGGTTTCGCGGGAGCAGTCATAA
back to top

Coding sequence (CDS) from alignment at ACJE01000020.1:317090..319132-

>ASPNIDRAFT_187212-T1 ID=ASPNIDRAFT_187212-T1|Name=ASPNIDRAFT_187212-T1|organism=Aspergillus niger ATCC 1015|type=CDS|length=5778bp|location=Sequence derived from alignment at ACJE01000020.1:317090..319132- (Aspergillus niger ATCC 1015)
CTACGCCTATATTCCGCGACCGGGGTCTTGCTGCTCTACGGAGGGCTGAT
AATGGAAGCTTAATACTGGATAAGGGACTGGCACCACAGAAGACGAGGAC
GGTTCGAGTGCGTGTGAAGCACCGCGGACAACTTACGGGATGCTCTAAAA
TGCCGGATCCGATCCCCGATGCAGCGTCGGTCGAGCGCAGGATTTTGCAA
GCACGCGACACAGTGTACGAGGAGGAGCTATTCCACGAGTTGATGCGCGA
AGCGCGTATCATGGGAAGTCATGGTGTGACGACTCGCCAAAACCTGGTCC
GACTGCCGATATCCGAGGACCAAGAGATCCTGCTGGATCTGGTAGATGCG
GACCGTGAAACGCCCGACGAAGACAAGATCGAGTCAACAGAACACGACGT
CCTTGCTAATGGGCTTTCACACTCAATTCGGATCCTGCTCGCGTATGCAC
ACCGCCAGAACCTGCGACGCAGAACCCAACCGCCGCCCCCGCTCTCCCAG
AAACGTCGGCTTACCCCCGAGTATCAGCTCCTGCGCCCTGTCATGGCGTA
TCTCCAACACAGCTCGCACGTCCGGTGGTTGGAGTCTTTCATGAATGATA
TATACCGGGTTCTGCGGGCGGCAGGGATCGAGCGTGATTTCCACGCCGTG
CCTTTTGCGTCTGTGAGCCTTCCGAAGGTGCGGGCTGTTCCGAAGGTAGA
GAGTCTGGTACAACAGTTCCTGATGCCCTTCGAATCGACATTTTCCGGCC
ATCTGATCACCCCTCAAAGCTCTTTTCGCGTGAAAATCCGCACCAACCCG
GTGTCGCCGCCATTTGGCACCCACTACGACATTTCCATTGACCTACCTCA
CCACCCCGAAGTTCAGCCTCCCGGTCGGGTTGGACTGCAGAATGAAGCAG
CTGCAGCTCTCATGCATTTCGTCAAGTTGGACATCGTGTCGGCCATCGCG
CTCCAGGGCTCGAAGACGACCAAAAATACCACCAAGAAAGAAGGCGCCGA
GGGGACTTTGACGTGGGAGGCGGCATATCCGCACCACGGCGAACTGCTGG
CGTTTTCGACTGCTGGCCAAAGCAAGAAGCTGAAAATCAGCCTGTCACGG
GAGGAATTGAAAGTGGAAACATTTTCACTTCGGGGACTTGAAGGGTTTGG
CCGATCGGGCGGCCCCAAGGCACCAAGTTTGCAGTCTCAGACGTGGACAG
CCACTCAGACAGATTCTAAGCCTGGTCTGATGGATTTTGTCGCGGAGGTT
TCGCGGGAGCAGTCATAAGCAGGCGCATATGGAAGCTCTGTTCGCTTTGG
ATTTTGTTTCCCTTTTGCTTTCGAAGCATACCCCTCGCCAGGCGGAGACT
TCGATGTCGGCGTTCCTGAAACAGGTTGCGCCGCTTGGGTCGTTGAATGC
GGAGATCGTCGAGCCGCCGCCGAAGTCGGAGGCCGCTGTGCAGGATGTCA
AGACTGTGTCGCGGGGTTGGAGGGCGCAGAACTTCAATGCCGCTGCGAAT
AAATTGCTCAATTCGGCGACGCGATTGGAAGAAGAGGTCGCTTCGGAGAC
GAAGTACTGGGATGAAGTACTGGCGGTTAAGGAGAAGGGTTGGAAGGTGT
GCAGGTTGCCCCGGGAGAGAACTGCGCTGGGAGTACAATATGGGTTCTTG
GAAGATGTCCGACTCATTCAGCCTCCCCCTGCGCCCGCTCACCGAGAAGC
CCGACCGCCCCGATACCCTTCCAATCGAGATCGCCCAAATCAACGCCCGA
TGGGGATCTTTCCGCGACGTGAACGAAGAGACACTGCTCGCCAAGATCGA
AGAGGACAAGAACCGGGACCCATGGGAAGAGGAAGATGAGGACGAAAAAC
TTGCTGAGGATGTGGACTCAACCGAGCGTCTGGAAACATTGTACAAGCGA
CGTGCCGAGATCTTGCAGTTCGCTATCTACGCCTATATTCCGCGACCGGG
GTCTTGCTGCTCTACGGAGGGCTGATAATGGAAGCTTAATACTGGATAAG
GGACTGGCACCACAGAAGACGAGGACGGTTCGAGTGCGTGTGAAGCACCG
CGGACAACTTACGGGATGCTCTAAAATGCCGGATCCGATCCCCGATGCAG
CGTCGGTCGAGCGCAGGATTTTGCAAGCACGCGACACAGTGTACGAGGAG
GAGCTATTCCACGAGTTGATGCGCGAAGCGCGTATCATGGGAAGTCATGG
TGTGACGACTCGCCAAAACCTGGTCCGACTGCCGATATCCGAGGACCAAG
AGATCCTGCTGGATCTGGTAGATGCGGACCGTGAAACGCCCGACGAAGAC
AAGATCGAGTCAACAGAACACGACGTCCTTGCTAATGGGCTTTCACACTC
AATTCGGATCCTGCTCGCGTATGCACACCGCCAGAACCTGCGACGCAGAA
CCCAACCGCCGCCCCCGCTCTCCCAGAAACGTCGGCTTACCCCCGAGTAT
CAGCTCCTGCGCCCTGTCATGGCGTATCTCCAACACAGCTCGCACGTCCG
GTGGTTGGAGTCTTTCATGAATGATATATACCGGGTTCTGCGGGCGGCAG
GGATCGAGCGTGATTTCCACGCCGTGCCTTTTGCGTCTGTGAGCCTTCCG
AAGGTGCGGGCTGTTCCGAAGGTAGAGAGTCTGGTACAACAGTTCCTGAT
GCCCTTCGAATCGACATTTTCCGGCCATCTGATCACCCCTCAAAGCTCTT
TTCGCGTGAAAATCCGCACCAACCCGGTGTCGCCGCCATTTGGCACCCAC
TACGACATTTCCATTGACCTACCTCACCACCCCGAAGTTCAGCCTCCCGG
TCGGGTTGGACTGCAGAATGAAGCAGCTGCAGCTCTCATGCATTTCGTCA
AGTTGGACATCGTGTCGGCCATCGCGCTCCAGGGCTCGAAGACGACCAAA
AATACCACCAAGAAAGAAGGCGCCGAGGGGACTTTGACGTGGGAGGCGGC
ATATCCGCACCACGGCGAACTGCTGGCGTTTTCGACTGCTGGCCAAAGCA
AGAAGCTGAAAATCAGCCTGTCACGGGAGGAATTGAAAGTGGAAACATTT
TCACTTCGGGGACTTGAAGGGTTTGGCCGATCGGGCGGCCCCAAGGCACC
AAGTTTGCAGTCTCAGACGTGGACAGCCACTCAGACAGATTCTAAGCCTG
GTCTGATGGATTTTGTCGCGGAGGTTTCGCGGGAGCAGTCATAAGCAGGC
GCATATGGAAGCTCTGTTCGCTTTGGATTTTGTTTCCCTTTTGCTTTCGA
AGCATACCCCTCGCCAGGCGGAGACTTCGATGTCGGCGTTCCTGAAACAG
GTTGCGCCGCTTGGGTCGTTGAATGCGGAGATCGTCGAGCCGCCGCCGAA
GTCGGAGGCCGCTGTGCAGGATGTCAAGACTGTGTCGCGGGGTTGGAGGG
CGCAGAACTTCAATGCCGCTGCGAATAAATTGCTCAATTCGGCGACGCGA
TTGGAAGAAGAGGTCGCTTCGGAGACGAAGTACTGGGATGAAGTACTGGC
GGTTAAGGAGAAGGGTTGGAAGGTGTGCAGGTTGCCCCGGGAGAGAACTG
CGCTGGGAGTACAATATGGGTTCTTGGAAGATGTCCGACTCATTCAGCCT
CCCCCTGCGCCCGCTCACCGAGAAGCCCGACCGCCCCGATACCCTTCCAA
TCGAGATCGCCCAAATCAACGCCCGATGGGGATCTTTCCGCGACGTGAAC
GAAGAGACACTGCTCGCCAAGATCGAAGAGGACAAGAACCGGGACCCATG
GGAAGAGGAAGATGAGGACGAAAAACTTGCTGAGGATGTGGACTCAACCG
AGCGTCTGGAAACATTGTACAAGCGACGTGCCGAGATCTTGCAGTTCGCT
ATCTACGCCTATATTCCGCGACCGGGGTCTTGCTGCTCTACGGAGGGCTG
ATAATGGAAGCTTAATACTGGATAAGGGACTGGCACCACAGAAGACGAGG
ACGGTTCGAGTGCGTGTGAAGCACCGCGGACAACTTACGGGATGCTCTAA
AATGCCGGATCCGATCCCCGATGCAGCGTCGGTCGAGCGCAGGATTTTGC
AAGCACGCGACACAGTGTACGAGGAGGAGCTATTCCACGAGTTGATGCGC
GAAGCGCGTATCATGGGAAGTCATGGTGTGACGACTCGCCAAAACCTGGT
CCGACTGCCGATATCCGAGGACCAAGAGATCCTGCTGGATCTGGTAGATG
CGGACCGTGAAACGCCCGACGAAGACAAGATCGAGTCAACAGAACACGAC
GTCCTTGCTAATGGGCTTTCACACTCAATTCGGATCCTGCTCGCGTATGC
ACACCGCCAGAACCTGCGACGCAGAACCCAACCGCCGCCCCCGCTCTCCC
AGAAACGTCGGCTTACCCCCGAGTATCAGCTCCTGCGCCCTGTCATGGCG
TATCTCCAACACAGCTCGCACGTCCGGTGGTTGGAGTCTTTCATGAATGA
TATATACCGGGTTCTGCGGGCGGCAGGGATCGAGCGTGATTTCCACGCCG
TGCCTTTTGCGTCTGTGAGCCTTCCGAAGGTGCGGGCTGTTCCGAAGGTA
GAGAGTCTGGTACAACAGTTCCTGATGCCCTTCGAATCGACATTTTCCGG
CCATCTGATCACCCCTCAAAGCTCTTTTCGCGTGAAAATCCGCACCAACC
CGGTGTCGCCGCCATTTGGCACCCACTACGACATTTCCATTGACCTACCT
CACCACCCCGAAGTTCAGCCTCCCGGTCGGGTTGGACTGCAGAATGAAGC
AGCTGCAGCTCTCATGCATTTCGTCAAGTTGGACATCGTGTCGGCCATCG
CGCTCCAGGGCTCGAAGACGACCAAAAATACCACCAAGAAAGAAGGCGCC
GAGGGGACTTTGACGTGGGAGGCGGCATATCCGCACCACGGCGAACTGCT
GGCGTTTTCGACTGCTGGCCAAAGCAAGAAGCTGAAAATCAGCCTGTCAC
GGGAGGAATTGAAAGTGGAAACATTTTCACTTCGGGGACTTGAAGGGTTT
GGCCGATCGGGCGGCCCCAAGGCACCAAGTTTGCAGTCTCAGACGTGGAC
AGCCACTCAGACAGATTCTAAGCCTGGTCTGATGGATTTTGTCGCGGAGG
TTTCGCGGGAGCAGTCATAAGCAGGCGCATATGGAAGCTCTGTTCGCTTT
GGATTTTGTTTCCCTTTTGCTTTCGAAGCATACCCCTCGCCAGGCGGAGA
CTTCGATGTCGGCGTTCCTGAAACAGGTTGCGCCGCTTGGGTCGTTGAAT
GCGGAGATCGTCGAGCCGCCGCCGAAGTCGGAGGCCGCTGTGCAGGATGT
CAAGACTGTGTCGCGGGGTTGGAGGGCGCAGAACTTCAATGCCGCTGCGA
ATAAATTGCTCAATTCGGCGACGCGATTGGAAGAAGAGGTCGCTTCGGAG
ACGAAGTACTGGGATGAAGTACTGGCGGTTAAGGAGAAGGGTTGGAAGGT
GTGCAGGTTGCCCCGGGAGAGAACTGCGCTGGGAGTACAATATGGGTTCT
TGGAAGATGTCCGACTCATTCAGCCTCCCCCTGCGCCCGCTCACCGAGAA
GCCCGACCGCCCCGATACCCTTCCAATCGAGATCGCCCAAATCAACGCCC
GATGGGGATCTTTCCGCGACGTGAACGAAGAGACACTGCTCGCCAAGATC
GAAGAGGACAAGAACCGGGACCCATGGGAAGAGGAAGATGAGGACGAAAA
ACTTGCTGAGGATGTGGACTCAACCGAGCGTCTGGAAACATTGTACAAGC
GACGTGCCGAGATCTTGCAGTTCGCTAT
back to top
Annotated Terms
The following terms have been associated with this mRNA:
Vocabulary: Cellular Component
TermDefinition
GO:0016592mediator complex
Vocabulary: Molecular Function
TermDefinition
GO:0003712transcription coregulator activity
Vocabulary: Biological Process
TermDefinition
GO:0006357regulation of transcription by RNA polymerase II
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
SRB4ASPNIDRAFT_187212Aspergillus niger ATCC 1015gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
ASPNIDRAFT_187212-T1ASPNIDRAFT_187212-T1-proteinAspergillus niger ATCC 1015polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
ASPNIDRAFT_187212-T1.cdsASPNIDRAFT_187212-T1.cdsAspergillus niger ATCC 1015CDS


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
ASPNIDRAFT_187212-T1.exon3ASPNIDRAFT_187212-T1.exon3Aspergillus niger ATCC 1015exon
ASPNIDRAFT_187212-T1.exon2ASPNIDRAFT_187212-T1.exon2Aspergillus niger ATCC 1015exon
ASPNIDRAFT_187212-T1.exon1ASPNIDRAFT_187212-T1.exon1Aspergillus niger ATCC 1015exon


Properties
Property NameValue
DBxrefInterPro:IPR019313
DBxrefPFAM:PF10156
ProductRNA polymerase II mediator complex subunit
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Aspergillus niger ATCC 1015 whole genome analysis2021-11-01
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ACJE01000020.1supercontigACJE01000020.1:317090..319132 -
Powered by Drupal