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Sequences
The following sequences are available for this feature:
mRNA from alignment at ACJE01000004.1:641299..642707- Legend: exonfive_prime_UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >ASPNIDRAFT_196832-T1 ID=ASPNIDRAFT_196832-T1|Name=ASPNIDRAFT_196832-T1|organism=Aspergillus niger ATCC 1015|type=mRNA|length=1409bp|location=Sequence derived from alignment at ACJE01000004.1:641299..642707- (Aspergillus niger ATCC 1015)
TGCACTTCTATTCTTTCGGTTGTGTTCAACTATATCTACAGTTGTCTCTT
TACGATCGCATCACTGAGCTGTGCTAGTCGATCAATTGCCGCTCTCCCTC
AATCAAATCCCCGCCACTCACACTCATCGCTCGCCGATGAGCTTCCGTCA
AGCCCTCAGACCCTTCCGTCGCACCATGTCCGGTGAAAAGATCTACGAAG
GCGTATTCGGTATACCTCACTCCTAGCATTTCTGCTTTGATTTACCTCCA
AGCTAATACTATGGAATGATAAATAGCCGTCCACAAACCCCAAGGCGTCT
CCTCCGCCGACGTCGTCCGCACCCTCCAAACGCACTTCAACCCCTCCACG
CTCTTCGCCCCCTGGCTCGCTGACGAGCGCGCCCGTCGCGCCCGCGAAAG
CACCTACCAGCGCAAGCGCCGCCGCACCCAGCGTCTCGACGTGAAGATCG
GCCACGGAGGCACCCTCGACCCCCTCGCGACCGGCATTCTCGTCGCGGGA
GTCGGCAAGGGCACGAAACACCTGAACGAGTTCCTAGGATGCACGAAGCA
ATATGAGACCGTTGTGCTGTTCGGCGCCGAGACAGATACCTATGATCGGC
TGGGGAAGGTGGTGCGCAAGGCGCCCTACGAGCATGTGACAAGGGAGATG
GTGGAGAAGGCACTGGAGCAGTTCCGTGGGAAGATTATGCAGAGGCCGCC
AATTTTCTCGGCGCTGAAGGTGAATGGCAAGAAGCTTTATGAGTATGCCC
GCGAGGGCAAGGAGCCGCCGATTGAGATCCAGAAGAGGCCGGTCGAGGTG
ACGGATTTGAGGATTGTCGAGTGGTACGAGCCTGGAACGCATGAGTTTAA
GTGGCCTGAGGTTGAGGCAGACGGGGAGGAGAAGGCTGTTGCGGAGAAGT
TGTTGGCGAAGGAGGATGAGTTGCCGATTGTGGAGAGGGAGGCGGATGGT
GAAGGAGAGGCCTCTGCGAAGAGAAAGTCCCCGCCTGCGGAGGATGCTAA
GGAGGAGAAGGTAGAGGGTGGTGATACTGAGTCTGCTCCCTCGGCTAAGA
AGCAGAAGGTTGCTGATGGCGAGGCTGCGCCTGTTGCGCCGGCCGAGCAG
GAGGCGTCGGATGCTCCCAATGCTGAAGCCGTGGAATCCTCGGAATCCAA
GCCCCAGTCCCAGCCCCAGCCGGCTGCGGTGAAGATCACCATGACGGTGT
CATCTGGCTTCTATGTGCGCTCCTTGGCGCACGATCTGGGCAAGGCGGTC
GGAAGCTGCGGGCTGATGTCCTCGCTGATCCGGTCTCGTCAGGCTCAGTT
CGAGCTTCACCCGGACAAGGTGCTCGAGTATAAGGACCTCGAGGCCGGCG
AGGAGGTCTGGGGCCCCAAGGTCCAGCGATTCCTCGAGGACTGGGAGGAG
AAGCGACTG back to topCoding sequence (CDS) from alignment at ACJE01000004.1:641299..642707- >ASPNIDRAFT_196832-T1 ID=ASPNIDRAFT_196832-T1|Name=ASPNIDRAFT_196832-T1|organism=Aspergillus niger ATCC 1015|type=CDS|length=2412bp|location=Sequence derived from alignment at ACJE01000004.1:641299..642707- (Aspergillus niger ATCC 1015)
CCGTCCACAAACCCCAAGGCGTCTCCTCCGCCGACGTCGTCCGCACCCTC
CAAACGCACTTCAACCCCTCCACGCTCTTCGCCCCCTGGCTCGCTGACGA
GCGCGCCCGTCGCGCCCGCGAAAGCACCTACCAGCGCAAGCGCCGCCGCA
CCCAGCGTCTCGACGTGAAGATCGGCCACGGAGGCACCCTCGACCCCCTC
GCGACCGGCATTCTCGTCGCGGGAGTCGGCAAGGGCACGAAACACCTGAA
CGAGTTCCTAGGATGCACGAAGCAATATGAGACCGTTGTGCTGTTCGGCG
CCGAGACAGATACCTATGATCGGCTGGGGAAGGTGGTGCGCAAGGCGCCC
TACGAGCATGTGACAAGGGAGATGGTGGAGAAGGCACTGGAGCAGTTCCG
TGGGAAGATTATGCAGAGGCCGCCAATTTTCTCGGCGCTGAAGGTGAATG
GCAAGAAGCTTTATGAGTATGCCCGCGAGGGCAAGGAGCCGCCGATTGAG
ATCCAGAAGAGGCCGGTCGAGGTGACGGATTTGAGGATTGTCGAGTGGTA
CGAGCCTGGAACGCATGAGTTTAAGTGGCCTGAGGTTGAGGCAGACGGGG
AGGAGAAGGCTGTTGCGGAGAAGTTGTTGGCGAAGGAGGATGAGTTGCCG
ATTGTGGAGAGGGAGGCGGATGGTGAAGGAGAGGCCTCTGCGAAGAGAAA
GTCCCCGCCTGCGGAGGATGCTAAGGAGGAGAAGGTAGAGGGTGGTGATA
CTGAGTCTGCTCCCTCGGCTAAGAAGCAGAAGGTTGCTGATGGCGAGGCT
GCGCCTGTTGCGCCGGCCGAGCAGGAGGCGTCGGATGCTCCCAATGCTGA
AGCCGTGGAATCCTCGGAATCCAAGCCCCAGTCCCAGCCCCAGCCGGCTG
CGGTGAAGATCACCATGACGGTGTCATCTGGCTTCTATGTGCGCTCCTTG
GCGCACGATCTGGGCAAGGCGGTCGGAAGCTGCGGGCTGATGTCCTCGCT
GATCCGGTCTCGTCAGGCTCAGTTCGAGCTTCACCCGGACAAGGTGCTCG
AGTATAAGGACCTCGAGGCCGGCGAGGAGGTCTGGGGCCCCAAGGTCCAG
CGATTCCTCGAGGACTGGGAGGAGAAGCGACTGATGAGCTTCCGTCAAGC
CCTCAGACCCTTCCGTCGCACCATGTCCGGTGAAAAGATCTACGAAGGCG
TATTCGCCGTCCACAAACCCCAAGGCGTCTCCTCCGCCGACGTCGTCCGC
ACCCTCCAAACGCACTTCAACCCCTCCACGCTCTTCGCCCCCTGGCTCGC
TGACGAGCGCGCCCGTCGCGCCCGCGAAAGCACCTACCAGCGCAAGCGCC
GCCGCACCCAGCGTCTCGACGTGAAGATCGGCCACGGAGGCACCCTCGAC
CCCCTCGCGACCGGCATTCTCGTCGCGGGAGTCGGCAAGGGCACGAAACA
CCTGAACGAGTTCCTAGGATGCACGAAGCAATATGAGACCGTTGTGCTGT
TCGGCGCCGAGACAGATACCTATGATCGGCTGGGGAAGGTGGTGCGCAAG
GCGCCCTACGAGCATGTGACAAGGGAGATGGTGGAGAAGGCACTGGAGCA
GTTCCGTGGGAAGATTATGCAGAGGCCGCCAATTTTCTCGGCGCTGAAGG
TGAATGGCAAGAAGCTTTATGAGTATGCCCGCGAGGGCAAGGAGCCGCCG
ATTGAGATCCAGAAGAGGCCGGTCGAGGTGACGGATTTGAGGATTGTCGA
GTGGTACGAGCCTGGAACGCATGAGTTTAAGTGGCCTGAGGTTGAGGCAG
ACGGGGAGGAGAAGGCTGTTGCGGAGAAGTTGTTGGCGAAGGAGGATGAG
TTGCCGATTGTGGAGAGGGAGGCGGATGGTGAAGGAGAGGCCTCTGCGAA
GAGAAAGTCCCCGCCTGCGGAGGATGCTAAGGAGGAGAAGGTAGAGGGTG
GTGATACTGAGTCTGCTCCCTCGGCTAAGAAGCAGAAGGTTGCTGATGGC
GAGGCTGCGCCTGTTGCGCCGGCCGAGCAGGAGGCGTCGGATGCTCCCAA
TGCTGAAGCCGTGGAATCCTCGGAATCCAAGCCCCAGTCCCAGCCCCAGC
CGGCTGCGGTGAAGATCACCATGACGGTGTCATCTGGCTTCTATGTGCGC
TCCTTGGCGCACGATCTGGGCAAGGCGGTCGGAAGCTGCGGGCTGATGTC
CTCGCTGATCCGGTCTCGTCAGGCTCAGTTCGAGCTTCACCCGGACAAGG
TGCTCGAGTATAAGGACCTCGAGGCCGGCGAGGAGGTCTGGGGCCCCAAG
GTCCAGCGATTCCTCGAGGACTGGGAGGAGAAGCGACTGATGAGCTTCCG
TCAAGCCCTCAGACCCTTCCGTCGCACCATGTCCGGTGAAAAGATCTACG
AAGGCGTATTCG back to top
Annotated Terms
The following terms have been associated with this mRNA:
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0009982 | pseudouridine synthase activity |
| GO:0003723 | RNA binding |
Vocabulary: Biological Process
| Term | Definition |
|---|
| GO:0001522 | pseudouridine synthesis |
| GO:0009451 | RNA modification |
| GO:0006396 | RNA processing |
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following exon feature(s) are a part of this mRNA:
The following five_prime_UTR feature(s) are a part of this mRNA:
Properties
| Property Name | Value |
|---|
| Note | BUSCO:EOG09264HU0 |
| DBxref | InterPro:IPR020103 |
| DBxref | InterPro:IPR014780 |
| DBxref | InterPro:IPR002501 |
| DBxref | PFAM:PF01509 |
| Product | hypothetical protein |
Analyses
This mRNA is derived from or has results from the following analyses
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| ACJE01000004.1 | supercontig | ACJE01000004.1:641299..642707 - |
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