You are here

Home

ASPNIDRAFT_199462-T1, ASPNIDRAFT_199462-T1 (mRNA) Aspergillus niger ATCC 1015

Overview
NameASPNIDRAFT_199462-T1
Unique NameASPNIDRAFT_199462-T1
TypemRNA
OrganismAspergillus niger ATCC 1015
Sequences
The following sequences are available for this feature:

mRNA from alignment at ACJE01000019.1:2186348..2187552-

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>ASPNIDRAFT_199462-T1 ID=ASPNIDRAFT_199462-T1|Name=ASPNIDRAFT_199462-T1|organism=Aspergillus niger ATCC 1015|type=mRNA|length=1205bp|location=Sequence derived from alignment at ACJE01000019.1:2186348..2187552- (Aspergillus niger ATCC 1015)
GACACCCGTCCGAGTTCTCCCACGACCTTTAGGTGGCATATTCACAATGG
CTGTCAGGAACTCCAGTGCGTCGTCCTGTTCTGTCGATTTTTCTCGAAGT
CGCCAATCCAATCCATACTAATTTGACTTCGTGATGATTTCAGGTCTCGC
CTCTTCTCGCCGCAAGTCGCGCGCCGCCCACTTCAACGCCCCCTCCAGCG
AGCGCCGCGTTATCCTCTCTGCTCCTCTCTCGAGCGAGCTCCGCGCCAAG
TACAATGTACGTTCGATCAGACCGATGTGATTCTTGTTTTTGCAGCCCCT
GGGATGTGTGTGTGTTTGGATATGGATTTGGCATGGTTTCTTTCTTTCCG
GTCGGGGACAGGCTGGATCAGGCCAGCGAGATTGGGATTTGGGAGGAAGA
TACAAGAACCAGATCCAATCGACAAACATCCAATCCGAGATATCAGGCAC
AACGAAACAATGCTGGGAGAAATGGTTCTAACGCAGTCGTTTTGATAGGT
CCGCTCCATGCCCATCCGCAAGGACGACGAGGTGAGCCAAGGCTGATTCT
AACCCGACATCTAACCCACTCGCTAAACTGTGAACAAGGTCATGGTCGTC
CGTGGCAGCAACAAGGGCCGTGAGGGCAAGGTCACCAGCGTCTACCGCCT
GAAGTGGGCCATCCACGTCGAGCGCATCAGCCGCGACAAGAGCAACGGCC
AGAGCGTCCCCATCCCCCTCCACCCCTCCAAGGTCGTCATCAAGAAGCTC
CACCTCGACAAGGACCGTGAGGCCATCCTTGAGCGTGTTGGCAAGGGTCG
TGAGGCCGTCAAGGCCAAGTCCGCTTAAATCGGGGGATTTTTGTGAGGTT
TAGTTCATATCTGGCAAATGGCAGTGATAACGCGGGAGTTCCGGAAGACG
CGAACAATATGGGATCTTGCCTACAGTCGGGATATATCTATAAAACATGA
TGTATTCTGATGAATGAAAAACGAAAAATTCAATTTCCTCTACCTACTTC
AATTCGGCACCCCCCAGAGATTTGCGTGTTCTATCCGGCGGACTGGCTGC
TGCGACCGTTTCCGGGGACTACCTATATCTCCGGACGGAGCAGCAGAGCA
CGGTGCTTTCTCTATCTCGGGAATAGATATTGGGATAGAAAGTTGTCGTC
CGGACCTGTTCGCCAGCCAGCACTTCCGAATCAACCCCAGTTCTGAAGCC
ATTGC
back to top

Coding sequence (CDS) from alignment at ACJE01000019.1:2186348..2187552-

>ASPNIDRAFT_199462-T1 ID=ASPNIDRAFT_199462-T1|Name=ASPNIDRAFT_199462-T1|organism=Aspergillus niger ATCC 1015|type=CDS|length=1620bp|location=Sequence derived from alignment at ACJE01000019.1:2186348..2187552- (Aspergillus niger ATCC 1015)
GTCATGGTCGTCCGTGGCAGCAACAAGGGCCGTGAGGGCAAGGTCACCAG
CGTCTACCGCCTGAAGTGGGCCATCCACGTCGAGCGCATCAGCCGCGACA
AGAGCAACGGCCAGAGCGTCCCCATCCCCCTCCACCCCTCCAAGGTCGTC
ATCAAGAAGCTCCACCTCGACAAGGACCGTGAGGCCATCCTTGAGCGTGT
TGGCAAGGGTCGTGAGGCCGTCAAGGCCAAGTCCGCTTAAGTCCGCTCCA
TGCCCATCCGCAAGGACGACGAGGTCTCGCCTCTTCTCGCCGCAAGTCGC
GCGCCGCCCACTTCAACGCCCCCTCCAGCGAGCGCCGCGTTATCCTCTCT
GCTCCTCTCTCGAGCGAGCTCCGCGCCAAGTACAATATGGCTGTCAGGAA
CTCCAGTCATGGTCGTCCGTGGCAGCAACAAGGGCCGTGAGGGCAAGGTC
ACCAGCGTCTACCGCCTGAAGTGGGCCATCCACGTCGAGCGCATCAGCCG
CGACAAGAGCAACGGCCAGAGCGTCCCCATCCCCCTCCACCCCTCCAAGG
TCGTCATCAAGAAGCTCCACCTCGACAAGGACCGTGAGGCCATCCTTGAG
CGTGTTGGCAAGGGTCGTGAGGCCGTCAAGGCCAAGTCCGCTTAAGTCCG
CTCCATGCCCATCCGCAAGGACGACGAGGTCTCGCCTCTTCTCGCCGCAA
GTCGCGCGCCGCCCACTTCAACGCCCCCTCCAGCGAGCGCCGCGTTATCC
TCTCTGCTCCTCTCTCGAGCGAGCTCCGCGCCAAGTACAATATGGCTGTC
AGGAACTCCAGTCATGGTCGTCCGTGGCAGCAACAAGGGCCGTGAGGGCA
AGGTCACCAGCGTCTACCGCCTGAAGTGGGCCATCCACGTCGAGCGCATC
AGCCGCGACAAGAGCAACGGCCAGAGCGTCCCCATCCCCCTCCACCCCTC
CAAGGTCGTCATCAAGAAGCTCCACCTCGACAAGGACCGTGAGGCCATCC
TTGAGCGTGTTGGCAAGGGTCGTGAGGCCGTCAAGGCCAAGTCCGCTTAA
GTCCGCTCCATGCCCATCCGCAAGGACGACGAGGTCTCGCCTCTTCTCGC
CGCAAGTCGCGCGCCGCCCACTTCAACGCCCCCTCCAGCGAGCGCCGCGT
TATCCTCTCTGCTCCTCTCTCGAGCGAGCTCCGCGCCAAGTACAATATGG
CTGTCAGGAACTCCAGTCATGGTCGTCCGTGGCAGCAACAAGGGCCGTGA
GGGCAAGGTCACCAGCGTCTACCGCCTGAAGTGGGCCATCCACGTCGAGC
GCATCAGCCGCGACAAGAGCAACGGCCAGAGCGTCCCCATCCCCCTCCAC
CCCTCCAAGGTCGTCATCAAGAAGCTCCACCTCGACAAGGACCGTGAGGC
CATCCTTGAGCGTGTTGGCAAGGGTCGTGAGGCCGTCAAGGCCAAGTCCG
CTTAAGTCCGCTCCATGCCCATCCGCAAGGACGACGAGGTCTCGCCTCTT
CTCGCCGCAAGTCGCGCGCCGCCCACTTCAACGCCCCCTCCAGCGAGCGC
CGCGTTATCCTCTCTGCTCCTCTCTCGAGCGAGCTCCGCGCCAAGTACAA
TATGGCTGTCAGGAACTCCA
back to top
Annotated Terms
The following terms have been associated with this mRNA:
Vocabulary: Cellular Component
TermDefinition
GO:0005840ribosome
GO:0015934large ribosomal subunit
Vocabulary: Biological Process
TermDefinition
GO:0006412translation
Vocabulary: Molecular Function
TermDefinition
GO:0003735structural constituent of ribosome
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
RPL26AASPNIDRAFT_199462Aspergillus niger ATCC 1015gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
ASPNIDRAFT_199462-T1ASPNIDRAFT_199462-T1-proteinAspergillus niger ATCC 1015polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
ASPNIDRAFT_199462-T1.cdsASPNIDRAFT_199462-T1.cdsAspergillus niger ATCC 1015CDS


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
ASPNIDRAFT_199462-T1.utr3p1ASPNIDRAFT_199462-T1.utr3p1Aspergillus niger ATCC 1015three_prime_UTR


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
ASPNIDRAFT_199462-T1.exon4ASPNIDRAFT_199462-T1.exon4Aspergillus niger ATCC 1015exon
ASPNIDRAFT_199462-T1.exon3ASPNIDRAFT_199462-T1.exon3Aspergillus niger ATCC 1015exon
ASPNIDRAFT_199462-T1.exon2ASPNIDRAFT_199462-T1.exon2Aspergillus niger ATCC 1015exon
ASPNIDRAFT_199462-T1.exon1ASPNIDRAFT_199462-T1.exon1Aspergillus niger ATCC 1015exon


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
ASPNIDRAFT_199462-T1.utr5p1ASPNIDRAFT_199462-T1.utr5p1Aspergillus niger ATCC 1015five_prime_UTR


Properties
Property NameValue
NoteBUSCO:EOG09265DAV
DBxrefInterPro:IPR008991
DBxrefInterPro:IPR041988
DBxrefInterPro:IPR005825
DBxrefInterPro:IPR005756
DBxrefInterPro:IPR014722
DBxrefInterPro:IPR005824
DBxrefPFAM:PF16906
DBxrefPFAM:PF00467
Product60S ribosomal protein L26A
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Aspergillus niger ATCC 1015 whole genome analysis2021-11-01
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ACJE01000019.1supercontigACJE01000019.1:2186348..2187552 -
Powered by Drupal