You are here

Home

ASPNIDRAFT_201684-T1, ASPNIDRAFT_201684-T1 (mRNA) Aspergillus niger ATCC 1015

Overview
NameASPNIDRAFT_201684-T1
Unique NameASPNIDRAFT_201684-T1
TypemRNA
OrganismAspergillus niger ATCC 1015
Sequences
The following sequences are available for this feature:

mRNA from alignment at ACJE01000002.1:1203638..1205628-

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>ASPNIDRAFT_201684-T1 ID=ASPNIDRAFT_201684-T1|Name=ASPNIDRAFT_201684-T1|organism=Aspergillus niger ATCC 1015|type=mRNA|length=1991bp|location=Sequence derived from alignment at ACJE01000002.1:1203638..1205628- (Aspergillus niger ATCC 1015)
TGACAAAAGACCGCCATATCTCCTCTCGCCATCTCGTCCTTTCATCCTCG
ATGCCTCTGAAGGCTTTGAATTAATTTTCACGTTTATTCAGAGCACTGGC
TGAGGGCACAACATGACGGACAAGCTCCCCCCTCCGCTTCTGGCGCTCTT
CCAACCTCGCCCGCCTCTGCGTTATGTCACCCCCATCAACCGTGCCCCAG
AAGACTGCAAGAAGAGTAGCATCGGTGGTATTGCGCAGTTCCTTCCTGAG
GTGAAGAAGTATGAGGAAGAGATCCCATATACGCCTACGGAAAGCTGGAT
CCAGCGCAAACTGCGCCAGAAAGTGGAGAAGAAAGAGAACATTAACAAGC
AATTGACGGAAGGCCTCGAGACCTGTATGATCATCGCATCTATTCTGGGC
TATATCAGTGTCAATACTGATGATTTGCTGCAGATGAACCATCCAACGAC
CAACAAGCACGAGGCGACCCGTTCAAGACGCTGTTTGTCGCTAGACTGAG
CTACGATGTCAAGGAATCGGACCTGGAACGGGAATTTGGTCGTTTCGGCC
CTATTGAACGGGTACAGTCACAGGCCGAGCGGGCTTGATGGGTTACACGC
ATCACTGACGTCTCCCAGATTCGCATCGTGAAAGACACCGTAACGCCAAA
GGGCTCGAAGAAACCACACAGGGGATATGCTTTTATTGTCTATGAGCGCG
AAAAGGATATGAAAGGTATTGCTACAGATCTAGTCGCCTGTCACTCTGGA
TTCACACTGGTATCGAATCCCCGTACTTCATTGATGCTAACCTAGTTTTC
TTTTGTCACGAATTCAGCTGCCTACAAGGAAACGGATGGTATCCGCATCA
AGGACCGCCGTGTCTTGGTAGACGTCGAGCGCGGTCGTACAGTCAAGGGA
TGGAAGCCTCGTCGCTTTGGTGGTGGTCTTGGAGGTCGTGGTTACACCAA
GGCTTTGCCGTCTCGACCTATCGGCCCTGGCTCTTTCAACGCCCCCTCTG
GTCCCGGCGGCTATGGTGGTGGATTCCGGGGTGGGTTCGGTGGCCGAGGT
GGTTTCAAGGGAGGATTCCGCGGTGACCGTGGATTTGGTGGGCCCCGCGG
GGGTGTTGGATACCAAGGTGGTCGCAACGGATTCGGTGGAGGCGGACAGG
CTCCCCCCAACGCCCCTTCAGGTCCGGGAGGCGGACGCAGCGGTGGGTTT
GGTGGTCCCCCTGGCGGCGGCAGATTTGAGCGTGAACCCCGGGGCGCCAC
TGGCAGCAACAGAGAACCCATCAGGCCCCGGGACGGGTTTGGCGACCGCG
ATCGTCGAGACCGTGATCGGGACCGCGACGGTGACCGTCACCGGGACCGT
GATCGGGATAGTTATCGCTACCGTGACCGCGACCGTGAACGCGACCGCGA
TCGTGGTGACAGGTACGGAGGCCGGGGCGACGACTACGGGCGGAAGCGAT
ACCATGAAGATGATTCGTATGATGACCCCCGTGCGAAGAGAAGATACTGA
ACCACTGTCCGCGAAGGATATCCCCATTCCAGTGTTTAATGACGGTTTGC
TGGTGGGTATCATTAACTTGGTCTTTCTCTTGTTATACCCCGTTGCAACA
ATGGGTAAGGCAAGGTCAAATAAGGCTCAAGCTCCGTGCTACATCGGACT
TCAACCATCGTATAACTCACAACAGTTGAAGTGCTCCGTACGAATCTTTC
CTTCGTAATCCTGGTTACGTTACGAGATATCCATCTTCCATTGGAGCAGG
CGCAATTTCCCCTCGAAGGTCGATTTCCGCCGTTGCAGCAGACAGATACG
CGCTGTTACGGACACCTGTCATGCTCTCTCTTTTTCTTTCTTGTCTTTGT
TACTACTCGTGTCCTTTTTTCTCGTGTCGTTTTTTTCTTTGGCCCTTGTG
CGGCCGCTACTTCTCTTCAGGGGTAAGTATGTACGTTAGATAGTCAACTT
GTCTTCACAGGCGGAGCTATTATGGTTTGGGATCTGGGTTT
back to top

Coding sequence (CDS) from alignment at ACJE01000002.1:1203638..1205628-

>ASPNIDRAFT_201684-T1 ID=ASPNIDRAFT_201684-T1|Name=ASPNIDRAFT_201684-T1|organism=Aspergillus niger ATCC 1015|type=CDS|length=4680bp|location=Sequence derived from alignment at ACJE01000002.1:1203638..1205628- (Aspergillus niger ATCC 1015)
CTGCCTACAAGGAAACGGATGGTATCCGCATCAAGGACCGCCGTGTCTTG
GTAGACGTCGAGCGCGGTCGTACAGTCAAGGGATGGAAGCCTCGTCGCTT
TGGTGGTGGTCTTGGAGGTCGTGGTTACACCAAGGCTTTGCCGTCTCGAC
CTATCGGCCCTGGCTCTTTCAACGCCCCCTCTGGTCCCGGCGGCTATGGT
GGTGGATTCCGGGGTGGGTTCGGTGGCCGAGGTGGTTTCAAGGGAGGATT
CCGCGGTGACCGTGGATTTGGTGGGCCCCGCGGGGGTGTTGGATACCAAG
GTGGTCGCAACGGATTCGGTGGAGGCGGACAGGCTCCCCCCAACGCCCCT
TCAGGTCCGGGAGGCGGACGCAGCGGTGGGTTTGGTGGTCCCCCTGGCGG
CGGCAGATTTGAGCGTGAACCCCGGGGCGCCACTGGCAGCAACAGAGAAC
CCATCAGGCCCCGGGACGGGTTTGGCGACCGCGATCGTCGAGACCGTGAT
CGGGACCGCGACGGTGACCGTCACCGGGACCGTGATCGGGATAGTTATCG
CTACCGTGACCGCGACCGTGAACGCGACCGCGATCGTGGTGACAGGTACG
GAGGCCGGGGCGACGACTACGGGCGGAAGCGATACCATGAAGATGATTCG
TATGATGACCCCCGTGCGAAGAGAAGATACTGAATTCGCATCGTGAAAGA
CACCGTAACGCCAAAGGGCTCGAAGAAACCACACAGGGGATATGCTTTTA
TTGTCTATGAGCGCGAAAAGGATATGAAAGATGAACCATCCAACGACCAA
CAAGCACGAGGCGACCCGTTCAAGACGCTGTTTGTCGCTAGACTGAGCTA
CGATGTCAAGGAATCGGACCTGGAACGGGAATTTGGTCGTTTCGGCCCTA
TTGAACGGATGACGGACAAGCTCCCCCCTCCGCTTCTGGCGCTCTTCCAA
CCTCGCCCGCCTCTGCGTTATGTCACCCCCATCAACCGTGCCCCAGAAGA
CTGCAAGAAGAGTAGCATCGGTGGTATTGCGCAGTTCCTTCCTGAGGTGA
AGAAGTATGAGGAAGAGATCCCATATACGCCTACGGAAAGCTGGATCCAG
CGCAAACTGCGCCAGAAAGTGGAGAAGAAAGAGAACATTAACAAGCAATT
GACGGAAGGCCTCGAGACCTCTGCCTACAAGGAAACGGATGGTATCCGCA
TCAAGGACCGCCGTGTCTTGGTAGACGTCGAGCGCGGTCGTACAGTCAAG
GGATGGAAGCCTCGTCGCTTTGGTGGTGGTCTTGGAGGTCGTGGTTACAC
CAAGGCTTTGCCGTCTCGACCTATCGGCCCTGGCTCTTTCAACGCCCCCT
CTGGTCCCGGCGGCTATGGTGGTGGATTCCGGGGTGGGTTCGGTGGCCGA
GGTGGTTTCAAGGGAGGATTCCGCGGTGACCGTGGATTTGGTGGGCCCCG
CGGGGGTGTTGGATACCAAGGTGGTCGCAACGGATTCGGTGGAGGCGGAC
AGGCTCCCCCCAACGCCCCTTCAGGTCCGGGAGGCGGACGCAGCGGTGGG
TTTGGTGGTCCCCCTGGCGGCGGCAGATTTGAGCGTGAACCCCGGGGCGC
CACTGGCAGCAACAGAGAACCCATCAGGCCCCGGGACGGGTTTGGCGACC
GCGATCGTCGAGACCGTGATCGGGACCGCGACGGTGACCGTCACCGGGAC
CGTGATCGGGATAGTTATCGCTACCGTGACCGCGACCGTGAACGCGACCG
CGATCGTGGTGACAGGTACGGAGGCCGGGGCGACGACTACGGGCGGAAGC
GATACCATGAAGATGATTCGTATGATGACCCCCGTGCGAAGAGAAGATAC
TGAATTCGCATCGTGAAAGACACCGTAACGCCAAAGGGCTCGAAGAAACC
ACACAGGGGATATGCTTTTATTGTCTATGAGCGCGAAAAGGATATGAAAG
ATGAACCATCCAACGACCAACAAGCACGAGGCGACCCGTTCAAGACGCTG
TTTGTCGCTAGACTGAGCTACGATGTCAAGGAATCGGACCTGGAACGGGA
ATTTGGTCGTTTCGGCCCTATTGAACGGATGACGGACAAGCTCCCCCCTC
CGCTTCTGGCGCTCTTCCAACCTCGCCCGCCTCTGCGTTATGTCACCCCC
ATCAACCGTGCCCCAGAAGACTGCAAGAAGAGTAGCATCGGTGGTATTGC
GCAGTTCCTTCCTGAGGTGAAGAAGTATGAGGAAGAGATCCCATATACGC
CTACGGAAAGCTGGATCCAGCGCAAACTGCGCCAGAAAGTGGAGAAGAAA
GAGAACATTAACAAGCAATTGACGGAAGGCCTCGAGACCTCTGCCTACAA
GGAAACGGATGGTATCCGCATCAAGGACCGCCGTGTCTTGGTAGACGTCG
AGCGCGGTCGTACAGTCAAGGGATGGAAGCCTCGTCGCTTTGGTGGTGGT
CTTGGAGGTCGTGGTTACACCAAGGCTTTGCCGTCTCGACCTATCGGCCC
TGGCTCTTTCAACGCCCCCTCTGGTCCCGGCGGCTATGGTGGTGGATTCC
GGGGTGGGTTCGGTGGCCGAGGTGGTTTCAAGGGAGGATTCCGCGGTGAC
CGTGGATTTGGTGGGCCCCGCGGGGGTGTTGGATACCAAGGTGGTCGCAA
CGGATTCGGTGGAGGCGGACAGGCTCCCCCCAACGCCCCTTCAGGTCCGG
GAGGCGGACGCAGCGGTGGGTTTGGTGGTCCCCCTGGCGGCGGCAGATTT
GAGCGTGAACCCCGGGGCGCCACTGGCAGCAACAGAGAACCCATCAGGCC
CCGGGACGGGTTTGGCGACCGCGATCGTCGAGACCGTGATCGGGACCGCG
ACGGTGACCGTCACCGGGACCGTGATCGGGATAGTTATCGCTACCGTGAC
CGCGACCGTGAACGCGACCGCGATCGTGGTGACAGGTACGGAGGCCGGGG
CGACGACTACGGGCGGAAGCGATACCATGAAGATGATTCGTATGATGACC
CCCGTGCGAAGAGAAGATACTGAATTCGCATCGTGAAAGACACCGTAACG
CCAAAGGGCTCGAAGAAACCACACAGGGGATATGCTTTTATTGTCTATGA
GCGCGAAAAGGATATGAAAGATGAACCATCCAACGACCAACAAGCACGAG
GCGACCCGTTCAAGACGCTGTTTGTCGCTAGACTGAGCTACGATGTCAAG
GAATCGGACCTGGAACGGGAATTTGGTCGTTTCGGCCCTATTGAACGGAT
GACGGACAAGCTCCCCCCTCCGCTTCTGGCGCTCTTCCAACCTCGCCCGC
CTCTGCGTTATGTCACCCCCATCAACCGTGCCCCAGAAGACTGCAAGAAG
AGTAGCATCGGTGGTATTGCGCAGTTCCTTCCTGAGGTGAAGAAGTATGA
GGAAGAGATCCCATATACGCCTACGGAAAGCTGGATCCAGCGCAAACTGC
GCCAGAAAGTGGAGAAGAAAGAGAACATTAACAAGCAATTGACGGAAGGC
CTCGAGACCTCTGCCTACAAGGAAACGGATGGTATCCGCATCAAGGACCG
CCGTGTCTTGGTAGACGTCGAGCGCGGTCGTACAGTCAAGGGATGGAAGC
CTCGTCGCTTTGGTGGTGGTCTTGGAGGTCGTGGTTACACCAAGGCTTTG
CCGTCTCGACCTATCGGCCCTGGCTCTTTCAACGCCCCCTCTGGTCCCGG
CGGCTATGGTGGTGGATTCCGGGGTGGGTTCGGTGGCCGAGGTGGTTTCA
AGGGAGGATTCCGCGGTGACCGTGGATTTGGTGGGCCCCGCGGGGGTGTT
GGATACCAAGGTGGTCGCAACGGATTCGGTGGAGGCGGACAGGCTCCCCC
CAACGCCCCTTCAGGTCCGGGAGGCGGACGCAGCGGTGGGTTTGGTGGTC
CCCCTGGCGGCGGCAGATTTGAGCGTGAACCCCGGGGCGCCACTGGCAGC
AACAGAGAACCCATCAGGCCCCGGGACGGGTTTGGCGACCGCGATCGTCG
AGACCGTGATCGGGACCGCGACGGTGACCGTCACCGGGACCGTGATCGGG
ATAGTTATCGCTACCGTGACCGCGACCGTGAACGCGACCGCGATCGTGGT
GACAGGTACGGAGGCCGGGGCGACGACTACGGGCGGAAGCGATACCATGA
AGATGATTCGTATGATGACCCCCGTGCGAAGAGAAGATACTGAATTCGCA
TCGTGAAAGACACCGTAACGCCAAAGGGCTCGAAGAAACCACACAGGGGA
TATGCTTTTATTGTCTATGAGCGCGAAAAGGATATGAAAGATGAACCATC
CAACGACCAACAAGCACGAGGCGACCCGTTCAAGACGCTGTTTGTCGCTA
GACTGAGCTACGATGTCAAGGAATCGGACCTGGAACGGGAATTTGGTCGT
TTCGGCCCTATTGAACGGATGACGGACAAGCTCCCCCCTCCGCTTCTGGC
GCTCTTCCAACCTCGCCCGCCTCTGCGTTATGTCACCCCCATCAACCGTG
CCCCAGAAGACTGCAAGAAGAGTAGCATCGGTGGTATTGCGCAGTTCCTT
CCTGAGGTGAAGAAGTATGAGGAAGAGATCCCATATACGCCTACGGAAAG
CTGGATCCAGCGCAAACTGCGCCAGAAAGTGGAGAAGAAAGAGAACATTA
ACAAGCAATTGACGGAAGGCCTCGAGACCT
back to top
Annotated Terms
The following terms have been associated with this mRNA:
Vocabulary: Molecular Function
TermDefinition
GO:0030619U1 snRNA binding
GO:0003676nucleic acid binding
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
ASPNIDRAFT_201684ASPNIDRAFT_201684Aspergillus niger ATCC 1015gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
ASPNIDRAFT_201684-T1ASPNIDRAFT_201684-T1-proteinAspergillus niger ATCC 1015polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
ASPNIDRAFT_201684-T1.cdsASPNIDRAFT_201684-T1.cdsAspergillus niger ATCC 1015CDS


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
ASPNIDRAFT_201684-T1.utr3p1ASPNIDRAFT_201684-T1.utr3p1Aspergillus niger ATCC 1015three_prime_UTR


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
ASPNIDRAFT_201684-T1.exon4ASPNIDRAFT_201684-T1.exon4Aspergillus niger ATCC 1015exon
ASPNIDRAFT_201684-T1.exon3ASPNIDRAFT_201684-T1.exon3Aspergillus niger ATCC 1015exon
ASPNIDRAFT_201684-T1.exon2ASPNIDRAFT_201684-T1.exon2Aspergillus niger ATCC 1015exon
ASPNIDRAFT_201684-T1.exon1ASPNIDRAFT_201684-T1.exon1Aspergillus niger ATCC 1015exon


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
ASPNIDRAFT_201684-T1.utr5p1ASPNIDRAFT_201684-T1.utr5p1Aspergillus niger ATCC 1015five_prime_UTR


Properties
Property NameValue
NoteBUSCO:EOG09264G1F
DBxrefInterPro:IPR035979
DBxrefInterPro:IPR034143
DBxrefInterPro:IPR012677
DBxrefInterPro:IPR022023
DBxrefInterPro:IPR000504
DBxrefPFAM:PF12220
DBxrefPFAM:PF00076
Producthypothetical protein
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Aspergillus niger ATCC 1015 whole genome analysis2021-11-01
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ACJE01000002.1supercontigACJE01000002.1:1203638..1205628 -
Powered by Drupal