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ASPNIDRAFT_202416-T1, ASPNIDRAFT_202416-T1 (mRNA) Aspergillus niger ATCC 1015

Overview
NameASPNIDRAFT_202416-T1
Unique NameASPNIDRAFT_202416-T1
TypemRNA
OrganismAspergillus niger ATCC 1015
Sequences
The following sequences are available for this feature:

mRNA from alignment at ACJE01000020.1:760415..762248-

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>ASPNIDRAFT_202416-T1 ID=ASPNIDRAFT_202416-T1|Name=ASPNIDRAFT_202416-T1|organism=Aspergillus niger ATCC 1015|type=mRNA|length=1834bp|location=Sequence derived from alignment at ACJE01000020.1:760415..762248- (Aspergillus niger ATCC 1015)
CCGCCGCCGCCCATTTCGCCCTCGCACGACACACCCCCAACCTACGCCCT
CGGCCGTTTCTTCGCCAATTCAATAAAACAGAAACGCAATCATGGCTGCT
GTCCAGGGAGCTATTTCGAAGCGCCGCAAGTTCGTCGCCGACGGTGTCTT
CTATGCCGAGCTGAACGAGTTCTTCCAGCGCGAGCTGGCTGAGGAGGGAT
ACTCCGGCGTCGAAGTCCGTGTCACTCCCACCGTCACCGACATCAGTACG
TCCGCCCGATATTTCATTTTGCATTTGATTCCAGATCCTGTGTGTTGTGT
TGGAAAAGGCCGGAAATTGGAGATTGGAAGAATCGACCGGGGAAAAGAAT
GGTGATCCGGGAGGAGGAAAAGAAAAACAGTTATCGGGAATACGGCCGGG
AATATCAACCAACCACGGGGAACTACTGGAATTGGAGACAATTTTATATA
CAAAGGAAGATGGAATATGTGCCAGTTGCTAACGGATGCTTTCTTTACAG
TCATCCGTGCCACCCACACCCAGGAGGTTCTCGGTGAGCAGGGCCGCCGC
ATCCGCGAGCTCACCTCCCTCATCCAGAAGCGCTTCAAGTTCCCCGAGAA
CTCCGTTTCCCTCTATGCCGCCAAGGTCCAGAACCGCGGTCTCTCCGCCG
TCGCTCAGTGCGAGTCCCTCCGCTACAAGCTTCTCAACGGTCTGGCCGTC
CGCCGTGCCTGCTACGGTGTTCTCCGTTTCATCATGGAGAGCGGTGCCAA
GGGTTGCGAGGTCGTCGTCTCCGGAAAGCTCCGTGCTGCCCGTGCCAAGT
CCATGAAGTTCACTGTACGTCTACCAACAGCGATTGATTTTGTTTTTCGA
ATGGTCGGATCGGTCCCGAAGCAGTGGTGGAATTTGCGCATATCCAACGA
CAACGATGCCTACTACGATCTGCAACAACGAAGCAACTGTGCAAAGGACC
GGACCGAAGCTCTACACCATTCGAAACACTCCATCATATGCATGCTATAA
CGGTATCAGAAAACTAACAACAATTCTTCTCAATAGGACGGTTTCATGAT
CCACTCCGGTCAGCCCGCCAAGGAATTCATCGACAGCGCTACCCGCCACG
TTCTCCTCCGCCAGGGTGTCCTCGGTATCAAGGTTAAGATCATGCGCGGT
TCCGACCCCGAGGGCAAGGCCGGTCCCCAGAAGACTCTCCCCGATGCCGT
CACCATCATCGAGCCCAAGGAGGAGCAGCCCGTCCTGCAGCCCATGAGCC
AGGACTACGGCGCCAAGGCTCTTGCCGCTCAGCAGGCCGCCGAGCAGCAG
CGTCTGGCCGAGCAGCAGGCCACCGAGGCCCAGGAGGGTGCCGGTGCCGA
GGCTTACGCCCAGGAGTAAAGAAAAAAATACATTCCAAACAAAAGAATTT
CATTTGGTTTTTTTCTTCTCCATTAGGCCCTGCTTCTCTTCTTCCTTGTT
CTCGAATATCATCTTCGTTACCTAGTCTCTCTCCTGTCCCGCCCCTTAAC
CTAACCTAACCTAACTCAAACCTCTTCTATATCTCTTACCTATGACGCAT
CCAAATAAACAACTACTTTGATGACCTCTAAGCTGTTTATATCACCCTTC
TCTTTCCCGTCAACGACGGGGTGGGGGAGATAGTTGCGCCTTCTGTGATT
GTATTTTCTGCCTGGTGGAATATCTAGGCGGAAATGGAATGAGAAGATGG
AACAGGTTGATGAGTTGGGTTTTCCCTTTCTCATTGGCTTACGTCATAGG
CTGGGTCAGGGTAGGACCTCGATTTCATTGATACCTAGTACCTAGGGCAC
GTGGGAAAAAGAGATTGTTTGGTCTACTAGTTGT
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Coding sequence (CDS) from alignment at ACJE01000020.1:760415..762248-

>ASPNIDRAFT_202416-T1 ID=ASPNIDRAFT_202416-T1|Name=ASPNIDRAFT_202416-T1|organism=Aspergillus niger ATCC 1015|type=CDS|length=2403bp|location=Sequence derived from alignment at ACJE01000020.1:760415..762248- (Aspergillus niger ATCC 1015)
GACGGTTTCATGATCCACTCCGGTCAGCCCGCCAAGGAATTCATCGACAG
CGCTACCCGCCACGTTCTCCTCCGCCAGGGTGTCCTCGGTATCAAGGTTA
AGATCATGCGCGGTTCCGACCCCGAGGGCAAGGCCGGTCCCCAGAAGACT
CTCCCCGATGCCGTCACCATCATCGAGCCCAAGGAGGAGCAGCCCGTCCT
GCAGCCCATGAGCCAGGACTACGGCGCCAAGGCTCTTGCCGCTCAGCAGG
CCGCCGAGCAGCAGCGTCTGGCCGAGCAGCAGGCCACCGAGGCCCAGGAG
GGTGCCGGTGCCGAGGCTTACGCCCAGGAGTAATCATCCGTGCCACCCAC
ACCCAGGAGGTTCTCGGTGAGCAGGGCCGCCGCATCCGCGAGCTCACCTC
CCTCATCCAGAAGCGCTTCAAGTTCCCCGAGAACTCCGTTTCCCTCTATG
CCGCCAAGGTCCAGAACCGCGGTCTCTCCGCCGTCGCTCAGTGCGAGTCC
CTCCGCTACAAGCTTCTCAACGGTCTGGCCGTCCGCCGTGCCTGCTACGG
TGTTCTCCGTTTCATCATGGAGAGCGGTGCCAAGGGTTGCGAGGTCGTCG
TCTCCGGAAAGCTCCGTGCTGCCCGTGCCAAGTCCATGAAGTTCACTATG
GCTGCTGTCCAGGGAGCTATTTCGAAGCGCCGCAAGTTCGTCGCCGACGG
TGTCTTCTATGCCGAGCTGAACGAGTTCTTCCAGCGCGAGCTGGCTGAGG
AGGGATACTCCGGCGTCGAAGTCCGTGTCACTCCCACCGTCACCGACATC
AGACGGTTTCATGATCCACTCCGGTCAGCCCGCCAAGGAATTCATCGACA
GCGCTACCCGCCACGTTCTCCTCCGCCAGGGTGTCCTCGGTATCAAGGTT
AAGATCATGCGCGGTTCCGACCCCGAGGGCAAGGCCGGTCCCCAGAAGAC
TCTCCCCGATGCCGTCACCATCATCGAGCCCAAGGAGGAGCAGCCCGTCC
TGCAGCCCATGAGCCAGGACTACGGCGCCAAGGCTCTTGCCGCTCAGCAG
GCCGCCGAGCAGCAGCGTCTGGCCGAGCAGCAGGCCACCGAGGCCCAGGA
GGGTGCCGGTGCCGAGGCTTACGCCCAGGAGTAATCATCCGTGCCACCCA
CACCCAGGAGGTTCTCGGTGAGCAGGGCCGCCGCATCCGCGAGCTCACCT
CCCTCATCCAGAAGCGCTTCAAGTTCCCCGAGAACTCCGTTTCCCTCTAT
GCCGCCAAGGTCCAGAACCGCGGTCTCTCCGCCGTCGCTCAGTGCGAGTC
CCTCCGCTACAAGCTTCTCAACGGTCTGGCCGTCCGCCGTGCCTGCTACG
GTGTTCTCCGTTTCATCATGGAGAGCGGTGCCAAGGGTTGCGAGGTCGTC
GTCTCCGGAAAGCTCCGTGCTGCCCGTGCCAAGTCCATGAAGTTCACTAT
GGCTGCTGTCCAGGGAGCTATTTCGAAGCGCCGCAAGTTCGTCGCCGACG
GTGTCTTCTATGCCGAGCTGAACGAGTTCTTCCAGCGCGAGCTGGCTGAG
GAGGGATACTCCGGCGTCGAAGTCCGTGTCACTCCCACCGTCACCGACAT
CAGACGGTTTCATGATCCACTCCGGTCAGCCCGCCAAGGAATTCATCGAC
AGCGCTACCCGCCACGTTCTCCTCCGCCAGGGTGTCCTCGGTATCAAGGT
TAAGATCATGCGCGGTTCCGACCCCGAGGGCAAGGCCGGTCCCCAGAAGA
CTCTCCCCGATGCCGTCACCATCATCGAGCCCAAGGAGGAGCAGCCCGTC
CTGCAGCCCATGAGCCAGGACTACGGCGCCAAGGCTCTTGCCGCTCAGCA
GGCCGCCGAGCAGCAGCGTCTGGCCGAGCAGCAGGCCACCGAGGCCCAGG
AGGGTGCCGGTGCCGAGGCTTACGCCCAGGAGTAATCATCCGTGCCACCC
ACACCCAGGAGGTTCTCGGTGAGCAGGGCCGCCGCATCCGCGAGCTCACC
TCCCTCATCCAGAAGCGCTTCAAGTTCCCCGAGAACTCCGTTTCCCTCTA
TGCCGCCAAGGTCCAGAACCGCGGTCTCTCCGCCGTCGCTCAGTGCGAGT
CCCTCCGCTACAAGCTTCTCAACGGTCTGGCCGTCCGCCGTGCCTGCTAC
GGTGTTCTCCGTTTCATCATGGAGAGCGGTGCCAAGGGTTGCGAGGTCGT
CGTCTCCGGAAAGCTCCGTGCTGCCCGTGCCAAGTCCATGAAGTTCACTA
TGGCTGCTGTCCAGGGAGCTATTTCGAAGCGCCGCAAGTTCGTCGCCGAC
GGTGTCTTCTATGCCGAGCTGAACGAGTTCTTCCAGCGCGAGCTGGCTGA
GGAGGGATACTCCGGCGTCGAAGTCCGTGTCACTCCCACCGTCACCGACA
TCA
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Annotated Terms
The following terms have been associated with this mRNA:
Vocabulary: Cellular Component
TermDefinition
GO:0015935small ribosomal subunit
Vocabulary: Biological Process
TermDefinition
GO:0006412translation
Vocabulary: Molecular Function
TermDefinition
GO:0003735structural constituent of ribosome
GO:0003723RNA binding
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
RPS3ASPNIDRAFT_202416Aspergillus niger ATCC 1015gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
ASPNIDRAFT_202416-T1ASPNIDRAFT_202416-T1-proteinAspergillus niger ATCC 1015polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
ASPNIDRAFT_202416-T1.cdsASPNIDRAFT_202416-T1.cdsAspergillus niger ATCC 1015CDS


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
ASPNIDRAFT_202416-T1.utr3p1ASPNIDRAFT_202416-T1.utr3p1Aspergillus niger ATCC 1015three_prime_UTR


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
ASPNIDRAFT_202416-T1.exon3ASPNIDRAFT_202416-T1.exon3Aspergillus niger ATCC 1015exon
ASPNIDRAFT_202416-T1.exon2ASPNIDRAFT_202416-T1.exon2Aspergillus niger ATCC 1015exon
ASPNIDRAFT_202416-T1.exon1ASPNIDRAFT_202416-T1.exon1Aspergillus niger ATCC 1015exon


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
ASPNIDRAFT_202416-T1.utr5p1ASPNIDRAFT_202416-T1.utr5p1Aspergillus niger ATCC 1015five_prime_UTR


Properties
Property NameValue
NoteBUSCO:EOG092647L7
DBxrefInterPro:IPR009019
DBxrefInterPro:IPR018280
DBxrefInterPro:IPR001351
DBxrefInterPro:IPR036419
DBxrefInterPro:IPR015946
DBxrefInterPro:IPR005703
DBxrefInterPro:IPR004044
DBxrefPFAM:PF00189
DBxrefPFAM:PF07650
Product40S ribosomal protein S3
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Aspergillus niger ATCC 1015 whole genome analysis2021-11-01
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ACJE01000020.1supercontigACJE01000020.1:760415..762248 -
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