You are here

Home

ASPNIDRAFT_206831-T1, ASPNIDRAFT_206831-T1 (mRNA) Aspergillus niger ATCC 1015

Overview
NameASPNIDRAFT_206831-T1
Unique NameASPNIDRAFT_206831-T1
TypemRNA
OrganismAspergillus niger ATCC 1015
Sequences
The following sequences are available for this feature:

mRNA from alignment at ACJE01000010.1:1468687..1470582-

Legend: exonfive_prime_UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>ASPNIDRAFT_206831-T1 ID=ASPNIDRAFT_206831-T1|Name=ASPNIDRAFT_206831-T1|organism=Aspergillus niger ATCC 1015|type=mRNA|length=1896bp|location=Sequence derived from alignment at ACJE01000010.1:1468687..1470582- (Aspergillus niger ATCC 1015)
GCTGAATCGACTATCTTGGGACCAACCTGACGTGAACCCTCAAGGTTACT
CCACCCTGGTTTCCCCGGCATTTCTCCCCCCCCGCTCATCGACTGCGGAG
ACGTACATCCCTTTGCGCTACCGACGTTCTCCGGACCACCATCTTCATCC
CCGACGCGCATCACTCTTTTTCCTTTAACTAAAAACTGCCCTCTCATTTT
ACTGGAGGGCGTGTCGGTGTGGTCGAAACGGATCCGGGAACATTGGAGGA
TGAAAGGGACCCGCGACCGATGGGTGTAATACGGAAGAAGACCGCCTCGC
GCGGCACTGAAGCGGGCACCAAGTATCACTGTGATATTTGCTCGGTTGAT
GTGACTTCGACGGTATAGTCTGCGATCTGTGTCCCAAGGACTTTCGCCTC
TTGTCGGTCTTAAACCTAACTTATCGGTCTCTTTCTAGGTTCGCGTATCT
TGCGCCCATCCCGCCTGCCACGAATACGATCTCTGCGTCCCCTGTTTCGC
TGCCGGAGAGAAATCCAAGAACCATGACCCGTCGACACATCCGTTCCAGG
TGATCGAACAGAACTCGGTCCCGATCTTCGAGGAAGACTGGGGTGCGGAC
GAGGAGCTCCTGCTGCTGGAAGGCGCCGAGATCTACGGACTGGGCTCATG
GGCGGACATTGCAGACCACATTGGCGGTTACCGCACCAAGGAGGAGGTCC
GCGACCACTACATCAGCGCCTATATCGATAGTCCAAACTTCCCGTTACCG
GAACGCGCCGATCCGGATGACAAGCGCCTCTCGGAGGCCATTTCGAAGGA
AGAATTCCAGGCGCGGAAGAAACGCCGCATTGAGGAGCGCAAAGAAGCGG
CCAAGGCAGCTCCCCCCACAACACCGAAGCAGAAGCCTACGGCCAGTGTA
CCGGCTTGTCACGAAGTGCAGGGTTACATGCCGGGTCGGTTGGAGTTCGA
GACAGAGTTTATGAACGAAGCCGAGGAAGCGGTACAGCATATGACATTTG
AGCCTGGCGCGGGCGAGACAGCGAACGGCGAGACGGACGCGGAAATGGAA
CTGAAAATGACCGTAGTGGATATCTATAACTCACGGCTTACGGCGCGCAC
GGAGCGCAAGAAGATCCTTTTCGAGCACAATCTCCTCGAGTACCGTAAAA
ACACGGCGCTGGAGAAGAAGCGCACGAAAGAGGAGCGCGATCTGCTGAAC
AAGGCGAAGCCGTTTGCCCGGATGATGAACCACGATGATTTCGAAGAGTT
CAACAAGGGTCTTGAGTACGAGCACAACCTGCGGCTAGCCATCACGCAGC
TCCAGGAATGGCGCCAGATGGGAATTGGCGATCTCAAGGGTGGAGAGAAA
TACGAACAGGAGAAGCAACAGCGGGCACAGCGGCTGATGCCGCAGGGCTC
ATTCGATCGGTTCGCCAGCACGCGACCGACGAAGCAGTCGCAGCAACCAG
AACAGCCATCGGCCGCGAGTCAGCTGACGACCCCGGAGCTCCCTCTCCGG
TTACAAAAGGCGTCTGGGGCGCCTAAGGCACCAGAGCCTCCCAACCCGCC
GATGAATGATTTTGATCGGGCGTTTGCCGCCACCAATGGCGACGGGATCA
GCACGCCGCAGCCAGTGAAGACCAAGTTCGTGATCCAGCCACTAAACGGA
GTGATTCCGTGGAAACTGGAGAACGAGGGAGCACCGGATTTGCACCTGCT
GACAAAGGAGGAAGTCGAGGTGTGCAATGTGCTGCACATGCAGCCCAAGC
CATACCTGGTAATTAAGGAGACGTTATTGAAAGAGGCGATGAAGCAGGGC
GGCAGTTTAAAGAAGAAGGACGCGCGAGCTATTTGCAAGGTCAGTCGCCT
TTCCCCCCCCCCTTCTGCCAGCAACAGGAGACGTATGGGTGTCTGA
back to top

Coding sequence (CDS) from alignment at ACJE01000010.1:1468687..1470582-

>ASPNIDRAFT_206831-T1 ID=ASPNIDRAFT_206831-T1|Name=ASPNIDRAFT_206831-T1|organism=Aspergillus niger ATCC 1015|type=CDS|length=3102bp|location=Sequence derived from alignment at ACJE01000010.1:1468687..1470582- (Aspergillus niger ATCC 1015)
GTTCGCGTATCTTGCGCCCATCCCGCCTGCCACGAATACGATCTCTGCGT
CCCCTGTTTCGCTGCCGGAGAGAAATCCAAGAACCATGACCCGTCGACAC
ATCCGTTCCAGGTGATCGAACAGAACTCGGTCCCGATCTTCGAGGAAGAC
TGGGGTGCGGACGAGGAGCTCCTGCTGCTGGAAGGCGCCGAGATCTACGG
ACTGGGCTCATGGGCGGACATTGCAGACCACATTGGCGGTTACCGCACCA
AGGAGGAGGTCCGCGACCACTACATCAGCGCCTATATCGATAGTCCAAAC
TTCCCGTTACCGGAACGCGCCGATCCGGATGACAAGCGCCTCTCGGAGGC
CATTTCGAAGGAAGAATTCCAGGCGCGGAAGAAACGCCGCATTGAGGAGC
GCAAAGAAGCGGCCAAGGCAGCTCCCCCCACAACACCGAAGCAGAAGCCT
ACGGCCAGTGTACCGGCTTGTCACGAAGTGCAGGGTTACATGCCGGGTCG
GTTGGAGTTCGAGACAGAGTTTATGAACGAAGCCGAGGAAGCGGTACAGC
ATATGACATTTGAGCCTGGCGCGGGCGAGACAGCGAACGGCGAGACGGAC
GCGGAAATGGAACTGAAAATGACCGTAGTGGATATCTATAACTCACGGCT
TACGGCGCGCACGGAGCGCAAGAAGATCCTTTTCGAGCACAATCTCCTCG
AGTACCGTAAAAACACGGCGCTGGAGAAGAAGCGCACGAAAGAGGAGCGC
GATCTGCTGAACAAGGCGAAGCCGTTTGCCCGGATGATGAACCACGATGA
TTTCGAAGAGTTCAACAAGGGTCTTGAGTACGAGCACAACCTGCGGCTAG
CCATCACGCAGCTCCAGGAATGGCGCCAGATGGGAATTGGCGATCTCAAG
GGTGGAGAGAAATACGAACAGGAGAAGCAACAGCGGGCACAGCGGCTGAT
GCCGCAGGGCTCATTCGATCGGTTCGCCAGCACGCGACCGACGAAGCAGT
CGCAGCAACCAGAACAGCCATCGGCCGCGAGTCAGCTGACGACCCCGGAG
CTCCCTCTCCGGTTACAAAAGGCGTCTGGGGCGCCTAAGGCACCAGAGCC
TCCCAACCCGCCGATGAATGATTTTGATCGGGCGTTTGCCGCCACCAATG
GCGACGGGATCAGCACGCCGCAGCCAGTGAAGACCAAGTTCGTGATCCAG
CCACTAAACGGAGTGATTCCGTGGAAACTGGAGAACGAGGGAGCACCGGA
TTTGCACCTGCTGACAAAGGAGGAAGTCGAGGTGTGCAATGTGCTGCACA
TGCAGCCCAAGCCATACCTGGTAATTAAGGAGACGTTATTGAAAGAGGCG
ATGAAGCAGGGCGGCAGTTTAAAGAAGAAGGACGCGCGAGCTATTTGCAA
GGTCAGTCGCCTTTCCCCCCCCCCTTCTGCCAGCAACAGGAGACGTATGG
GTGTCTGAATGGGTGTAATACGGAAGAAGACCGCCTCGCGCGGCACTGAA
GCGGGCACCAAGTATCACTGTGATATTTGCTCGGTTGATGTGACTTCGAC
GGTTCGCGTATCTTGCGCCCATCCCGCCTGCCACGAATACGATCTCTGCG
TCCCCTGTTTCGCTGCCGGAGAGAAATCCAAGAACCATGACCCGTCGACA
CATCCGTTCCAGGTGATCGAACAGAACTCGGTCCCGATCTTCGAGGAAGA
CTGGGGTGCGGACGAGGAGCTCCTGCTGCTGGAAGGCGCCGAGATCTACG
GACTGGGCTCATGGGCGGACATTGCAGACCACATTGGCGGTTACCGCACC
AAGGAGGAGGTCCGCGACCACTACATCAGCGCCTATATCGATAGTCCAAA
CTTCCCGTTACCGGAACGCGCCGATCCGGATGACAAGCGCCTCTCGGAGG
CCATTTCGAAGGAAGAATTCCAGGCGCGGAAGAAACGCCGCATTGAGGAG
CGCAAAGAAGCGGCCAAGGCAGCTCCCCCCACAACACCGAAGCAGAAGCC
TACGGCCAGTGTACCGGCTTGTCACGAAGTGCAGGGTTACATGCCGGGTC
GGTTGGAGTTCGAGACAGAGTTTATGAACGAAGCCGAGGAAGCGGTACAG
CATATGACATTTGAGCCTGGCGCGGGCGAGACAGCGAACGGCGAGACGGA
CGCGGAAATGGAACTGAAAATGACCGTAGTGGATATCTATAACTCACGGC
TTACGGCGCGCACGGAGCGCAAGAAGATCCTTTTCGAGCACAATCTCCTC
GAGTACCGTAAAAACACGGCGCTGGAGAAGAAGCGCACGAAAGAGGAGCG
CGATCTGCTGAACAAGGCGAAGCCGTTTGCCCGGATGATGAACCACGATG
ATTTCGAAGAGTTCAACAAGGGTCTTGAGTACGAGCACAACCTGCGGCTA
GCCATCACGCAGCTCCAGGAATGGCGCCAGATGGGAATTGGCGATCTCAA
GGGTGGAGAGAAATACGAACAGGAGAAGCAACAGCGGGCACAGCGGCTGA
TGCCGCAGGGCTCATTCGATCGGTTCGCCAGCACGCGACCGACGAAGCAG
TCGCAGCAACCAGAACAGCCATCGGCCGCGAGTCAGCTGACGACCCCGGA
GCTCCCTCTCCGGTTACAAAAGGCGTCTGGGGCGCCTAAGGCACCAGAGC
CTCCCAACCCGCCGATGAATGATTTTGATCGGGCGTTTGCCGCCACCAAT
GGCGACGGGATCAGCACGCCGCAGCCAGTGAAGACCAAGTTCGTGATCCA
GCCACTAAACGGAGTGATTCCGTGGAAACTGGAGAACGAGGGAGCACCGG
ATTTGCACCTGCTGACAAAGGAGGAAGTCGAGGTGTGCAATGTGCTGCAC
ATGCAGCCCAAGCCATACCTGGTAATTAAGGAGACGTTATTGAAAGAGGC
GATGAAGCAGGGCGGCAGTTTAAAGAAGAAGGACGCGCGAGCTATTTGCA
AGGTCAGTCGCCTTTCCCCCCCCCCTTCTGCCAGCAACAGGAGACGTATG
GGTGTCTGAATGGGTGTAATACGGAAGAAGACCGCCTCGCGCGGCACTGA
AGCGGGCACCAAGTATCACTGTGATATTTGCTCGGTTGATGTGACTTCGA
CG
back to top
Annotated Terms
The following terms have been associated with this mRNA:
Vocabulary: Biological Process
TermDefinition
GO:0006357regulation of transcription by RNA polymerase II
GO:0035065regulation of histone acetylation
Vocabulary: Molecular Function
TermDefinition
GO:0003677DNA binding
GO:0003713transcription coactivator activity
GO:0008270zinc ion binding
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
ASPNIDRAFT_206831ASPNIDRAFT_206831Aspergillus niger ATCC 1015gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
ASPNIDRAFT_206831-T1ASPNIDRAFT_206831-T1-proteinAspergillus niger ATCC 1015polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
ASPNIDRAFT_206831-T1.cdsASPNIDRAFT_206831-T1.cdsAspergillus niger ATCC 1015CDS


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
ASPNIDRAFT_206831-T1.exon2ASPNIDRAFT_206831-T1.exon2Aspergillus niger ATCC 1015exon
ASPNIDRAFT_206831-T1.exon1ASPNIDRAFT_206831-T1.exon1Aspergillus niger ATCC 1015exon


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
ASPNIDRAFT_206831-T1.utr5p1ASPNIDRAFT_206831-T1.utr5p1Aspergillus niger ATCC 1015five_prime_UTR


Properties
Property NameValue
DBxrefInterPro:IPR009057
DBxrefInterPro:IPR041983
DBxrefInterPro:IPR017884
DBxrefInterPro:IPR016827
DBxrefInterPro:IPR001005
DBxrefInterPro:IPR000433
DBxrefPFAM:PF00569
DBxrefPFAM:PF00249
ProductADA2 subunit of SAGA complex
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Aspergillus niger ATCC 1015 whole genome analysis2021-11-01
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ACJE01000010.1supercontigACJE01000010.1:1468687..1470582 -
Powered by Drupal