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ASPNIDRAFT_208439-T1, ASPNIDRAFT_208439-T1 (mRNA) Aspergillus niger ATCC 1015

Overview
NameASPNIDRAFT_208439-T1
Unique NameASPNIDRAFT_208439-T1
TypemRNA
OrganismAspergillus niger ATCC 1015
Sequences
The following sequences are available for this feature:

mRNA from alignment at ACJE01000021.1:194284..195418+

Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>ASPNIDRAFT_208439-T1 ID=ASPNIDRAFT_208439-T1|Name=ASPNIDRAFT_208439-T1|organism=Aspergillus niger ATCC 1015|type=mRNA|length=1135bp|location=Sequence derived from alignment at ACJE01000021.1:194284..195418+ (Aspergillus niger ATCC 1015)
CGAACCCCCCCTTCGACTTTCGACAACCATCCGCCCATCCAGCCAATTTT
ATCCATCAGTTCGGTACGTATAGAGACCCCCTATTGTGAATTTATATCAC
CAGTCGATCTTCCCTGGTTGCGAAAAGAAAAGAAAAAGACACGAGAAATT
TCCCTACGCACAAAGTCCGCCTATATAACCCCGAATCTTGAAATCCGCAT
CATGTCCGCCACCAGAACCCTGCAACTTCAGCTTCTTCCGAACACCACCC
ATATATTGGAAAATACATAATTCTAACGGAAATTCTTGCTCTACAGTTCA
CCCTCCTTCGAACATAATCCGACAAGATGGGTAAGGGACAGCCCCGTGGT
TTGAACGCCGCCCGCAAGCTCGCGACCACCCGTCGCGAGAACCGCTGGGC
CGATCTGCACTACAAGAAGCGCCTCCTCGGTACTGCCTACAAGTCCTCTC
CCTTCGGAGGTGCCTCCCACGCCAAGGGTATCGTTCTTGAGAAGGTCGGT
GTTGAGGCCAAGCAGCCCAACTCCGCTATTCGCAAGTGTGTCAAGGTCCA
GCTCATCAAGAACGGCAAGAAGGTTACCGCTTTCGGTGGGTGATCCTATC
CTTTTCTTTTTCTATTTCCCGGTTGTGATGGATGTTTATGGTTTGGGGAT
TTTGTGATGGGATATTGTGCGGAGAATGGAGCAGAAGAAGGAGAAGGGAA
TAAAGGACGGAGTGGCAAACGGGAAATATCGCATATTCTTTAAGAGGGTA
TCGATTGGCTAACATATTTCCTGTATAGTCCCCAACGATGGTTGCTTGAA
CTTCATCGATGAGAACGACGAGGTCCTCCTCGCCGGTTTCGGTCGTAAGG
GCAAGGCCAAGGGTGATATTCCCGGTGTCCGTTTCAAGGTCGTCAAGGTT
TCCGGTGTCGGTCTGCTCGCTCTCTGGAAGGAGAAGAAGGAGAAGCCCCG
CTCTTAAATAACCCAAACCCTGGGGAATTTAATAAAGATGCTATTAGCGG
GGTGGAAGGGGGCCCATTCCATGGAAGAAGCTTCGGGGCAAAGGCAAAGC
AAACACAAGTCTATGGTCTGGAATTGATGGTTCAGGACGGATGAGACCCT
GCAAAATAAATACCATTTGCAGCGTACTACGATTG
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Coding sequence (CDS) from alignment at ACJE01000021.1:194284..195418+

>ASPNIDRAFT_208439-T1 ID=ASPNIDRAFT_208439-T1|Name=ASPNIDRAFT_208439-T1|organism=Aspergillus niger ATCC 1015|type=CDS|length=876bp|location=Sequence derived from alignment at ACJE01000021.1:194284..195418+ (Aspergillus niger ATCC 1015)
ATGGGTAAGGGACAGCCCCGTGGTTTGAACGCCGCCCGCAAGCTCGCGAC
CACCCGTCGCGAGAACCGCTGGGCCGATCTGCACTACAAGAAGCGCCTCC
TCGGTACTGCCTACAAGTCCTCTCCCTTCGGAGGTGCCTCCCACGCCAAG
GGTATCGTTCTTGAGAAGGTCGGTGTTGAGGCCAAGCAGCCCAACTCCGC
TATTCGCAAGTGTGTCAAGGTCCAGCTCATCAAGAACGGCAAGAAGGTTA
CCGCTTTCGTCCCCAACGATGGTTGCTTGAACTTCATCGATGAGAACGAC
GAGGTCCTCCTCGCCGGTTTCGGTCGTAAGGGCAAGGCCAAGGGTGATAT
TCCCGGTGTCCGTTTCAAGGTCGTCAAGGTTTCCGGTGTCGGTCTGCTCG
CTCTCTGGAAGGAGAAGAAGGAGAAGCCCCGCTCTTAAATGGGTAAGGGA
CAGCCCCGTGGTTTGAACGCCGCCCGCAAGCTCGCGACCACCCGTCGCGA
GAACCGCTGGGCCGATCTGCACTACAAGAAGCGCCTCCTCGGTACTGCCT
ACAAGTCCTCTCCCTTCGGAGGTGCCTCCCACGCCAAGGGTATCGTTCTT
GAGAAGGTCGGTGTTGAGGCCAAGCAGCCCAACTCCGCTATTCGCAAGTG
TGTCAAGGTCCAGCTCATCAAGAACGGCAAGAAGGTTACCGCTTTCGTCC
CCAACGATGGTTGCTTGAACTTCATCGATGAGAACGACGAGGTCCTCCTC
GCCGGTTTCGGTCGTAAGGGCAAGGCCAAGGGTGATATTCCCGGTGTCCG
TTTCAAGGTCGTCAAGGTTTCCGGTGTCGGTCTGCTCGCTCTCTGGAAGG
AGAAGAAGGAGAAGCCCCGCTCTTAA
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Annotated Terms
The following terms have been associated with this mRNA:
Vocabulary: Cellular Component
TermDefinition
GO:0015935small ribosomal subunit
GO:0005840ribosome
Vocabulary: Biological Process
TermDefinition
GO:0006412translation
Vocabulary: Molecular Function
TermDefinition
GO:0003735structural constituent of ribosome
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
RPS23ASPNIDRAFT_208439Aspergillus niger ATCC 1015gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
ASPNIDRAFT_208439-T1ASPNIDRAFT_208439-T1-proteinAspergillus niger ATCC 1015polypeptide


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
ASPNIDRAFT_208439-T1.utr5p1ASPNIDRAFT_208439-T1.utr5p1Aspergillus niger ATCC 1015five_prime_UTR
ASPNIDRAFT_208439-T1.utr5p2ASPNIDRAFT_208439-T1.utr5p2Aspergillus niger ATCC 1015five_prime_UTR


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
ASPNIDRAFT_208439-T1.exon1ASPNIDRAFT_208439-T1.exon1Aspergillus niger ATCC 1015exon
ASPNIDRAFT_208439-T1.exon2ASPNIDRAFT_208439-T1.exon2Aspergillus niger ATCC 1015exon
ASPNIDRAFT_208439-T1.exon3ASPNIDRAFT_208439-T1.exon3Aspergillus niger ATCC 1015exon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
ASPNIDRAFT_208439-T1.cdsASPNIDRAFT_208439-T1.cdsAspergillus niger ATCC 1015CDS


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
ASPNIDRAFT_208439-T1.utr3p1ASPNIDRAFT_208439-T1.utr3p1Aspergillus niger ATCC 1015three_prime_UTR


Properties
Property NameValue
DBxrefInterPro:IPR012340
DBxrefInterPro:IPR005680
DBxrefInterPro:IPR006032
DBxrefPFAM:PF00164
Product40S ribosomal protein S23
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Aspergillus niger ATCC 1015 whole genome analysis2021-11-01
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ACJE01000021.1supercontigACJE01000021.1:194284..195418 +
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