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ASPNIDRAFT_209239-T1, ASPNIDRAFT_209239-T1 (mRNA) Aspergillus niger ATCC 1015

Overview
NameASPNIDRAFT_209239-T1
Unique NameASPNIDRAFT_209239-T1
TypemRNA
OrganismAspergillus niger ATCC 1015
Sequences
The following sequences are available for this feature:

mRNA from alignment at ACJE01000009.1:2374345..2375720+

Legend: five_prime_UTRexonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>ASPNIDRAFT_209239-T1 ID=ASPNIDRAFT_209239-T1|Name=ASPNIDRAFT_209239-T1|organism=Aspergillus niger ATCC 1015|type=mRNA|length=1376bp|location=Sequence derived from alignment at ACJE01000009.1:2374345..2375720+ (Aspergillus niger ATCC 1015)
CGTCATCGCTCCTCCTCCTCCTCCTTCATCTCCCATCTTCATCCCCTTGC
TTATCCCGCAACAATCCCTCCCACACACTTCTGACAGACCCTTCATCGTC
CCCTCCCAGTCCTATCTCCATCGCTGACAGCTCGTCTCACGTTCCTTCTG
TCTCCGCCATGCCTGCCACCACGGCGGACGCCCTTTCCCTCGTTCAGCGC
ACCGTCACGGTCGCTCCGCTAGTTCTTCTCTCCGTCGCAGATCACTACGG
CCGCTCGGCCAAGGGTACCCGGAAACGTGTGGTTGGTGTGCTGCTGGGTG
AGAACTCGGGCCAGAATGTCCGGGTATCGAACAGCTTTGCGGGTGCGTCA
TTGACCTTCTATTTACCTTCGGTATCTCTTTCAGTGTCCACGTGCTGACA
GTTCCTTCTCCTAGTACCCTTCGAGGAAGATGAGAAGGACCCCTCCGTTT
GGTTCCTAGATCACAACTTTGTCGAGTCGATGAGGGACATGTTCAAGAAG
ATCAATGCTCGTGAGAAGCTGGTTGGATGGTATCACTCGGGCCCGAAGCT
GCGGGCCTCGGATTTGGAAATCAACGAACTCTTCAAGCGCTACACACCGA
ACCCTCTGCTGGTGATTGTGGATGTCCAACCGAAGGAAGTCGGCGTTCCT
ACGGATGCTTACTTTGCTGTGGATGAGATCAAGGATGTGAGTAACTATGC
GCGCCGTCGTACCGGACCTCGTTAAAGGACATATGGACTAATCATCACAA
TGCTGTAACAGGATGGCACCACAACATCAAAGACCTTCGTCCACACCCCG
TCTATAATCGAAGCTGAGGAAGCTGAGGAAATTGGAGTGGAGCACCTTCT
CCGGGATATCAGGGATGTCGCTGTCGGAACCCTCTCCACCCGCATAACGT
CGCAGCTTCAGTCGCTGCAGGGTCTGCACCTGCGTTTGCGCGACATCGGC
CAATACCTGCAGAAGGTTCTTGACCACGAACTCCCCGTCAACCACGCCAT
TTTGGGCAACCTCCAGGACGTCTTCAACCTCCTCCCCAACCTTTCCACAC
CAGCCGCCACGCCGCGCATCAGCGGCGCGCCCGAACAGCCGACGGAGAAC
AGCGAGCTCGCACGGGCCATGAGCATCAAGACCAACGATCAATTAATGGC
GATCTACTTGAGCAGCTTGATCCGCGCCATCACCGCATTCCACGACTTGA
TCGAGAACAAGATCCAGAACCGGCAGCAACAAGAAGAGAACGAGCTGAAG
AGGGAACAGGAGGCCAACGCGGCCAAGACCGAGAAGGAGGCCGCGAAGAA
GGCCAACAGTGCCGCCAATGGAGAGCAGAAGGAGGGTCAAGACAAGGAGA
AGGCCAAGAAGAGCCAGAAGGAGTAG
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Coding sequence (CDS) from alignment at ACJE01000009.1:2374345..2375720+

>ASPNIDRAFT_209239-T1 ID=ASPNIDRAFT_209239-T1|Name=ASPNIDRAFT_209239-T1|organism=Aspergillus niger ATCC 1015|type=CDS|length=3213bp|location=Sequence derived from alignment at ACJE01000009.1:2374345..2375720+ (Aspergillus niger ATCC 1015)
ATGCCTGCCACCACGGCGGACGCCCTTTCCCTCGTTCAGCGCACCGTCAC
GGTCGCTCCGCTAGTTCTTCTCTCCGTCGCAGATCACTACGGCCGCTCGG
CCAAGGGTACCCGGAAACGTGTGGTTGGTGTGCTGCTGGGTGAGAACTCG
GGCCAGAATGTCCGGGTATCGAACAGCTTTGCGGTACCCTTCGAGGAAGA
TGAGAAGGACCCCTCCGTTTGGTTCCTAGATCACAACTTTGTCGAGTCGA
TGAGGGACATGTTCAAGAAGATCAATGCTCGTGAGAAGCTGGTTGGATGG
TATCACTCGGGCCCGAAGCTGCGGGCCTCGGATTTGGAAATCAACGAACT
CTTCAAGCGCTACACACCGAACCCTCTGCTGGTGATTGTGGATGTCCAAC
CGAAGGAAGTCGGCGTTCCTACGGATGCTTACTTTGCTGTGGATGAGATC
AAGGATGATGGCACCACAACATCAAAGACCTTCGTCCACACCCCGTCTAT
AATCGAAGCTGAGGAAGCTGAGGAAATTGGAGTGGAGCACCTTCTCCGGG
ATATCAGGGATGTCGCTGTCGGAACCCTCTCCACCCGCATAACGTCGCAG
CTTCAGTCGCTGCAGGGTCTGCACCTGCGTTTGCGCGACATCGGCCAATA
CCTGCAGAAGGTTCTTGACCACGAACTCCCCGTCAACCACGCCATTTTGG
GCAACCTCCAGGACGTCTTCAACCTCCTCCCCAACCTTTCCACACCAGCC
GCCACGCCGCGCATCAGCGGCGCGCCCGAACAGCCGACGGAGAACAGCGA
GCTCGCACGGGCCATGAGCATCAAGACCAACGATCAATTAATGGCGATCT
ACTTGAGCAGCTTGATCCGCGCCATCACCGCATTCCACGACTTGATCGAG
AACAAGATCCAGAACCGGCAGCAACAAGAAGAGAACGAGCTGAAGAGGGA
ACAGGAGGCCAACGCGGCCAAGACCGAGAAGGAGGCCGCGAAGAAGGCCA
ACAGTGCCGCCAATGGAGAGCAGAAGGAGGGTCAAGACAAGGAGAAGGCC
AAGAAGAGCCAGAAGGAGTAGATGCCTGCCACCACGGCGGACGCCCTTTC
CCTCGTTCAGCGCACCGTCACGGTCGCTCCGCTAGTTCTTCTCTCCGTCG
CAGATCACTACGGCCGCTCGGCCAAGGGTACCCGGAAACGTGTGGTTGGT
GTGCTGCTGGGTGAGAACTCGGGCCAGAATGTCCGGGTATCGAACAGCTT
TGCGGTACCCTTCGAGGAAGATGAGAAGGACCCCTCCGTTTGGTTCCTAG
ATCACAACTTTGTCGAGTCGATGAGGGACATGTTCAAGAAGATCAATGCT
CGTGAGAAGCTGGTTGGATGGTATCACTCGGGCCCGAAGCTGCGGGCCTC
GGATTTGGAAATCAACGAACTCTTCAAGCGCTACACACCGAACCCTCTGC
TGGTGATTGTGGATGTCCAACCGAAGGAAGTCGGCGTTCCTACGGATGCT
TACTTTGCTGTGGATGAGATCAAGGATGATGGCACCACAACATCAAAGAC
CTTCGTCCACACCCCGTCTATAATCGAAGCTGAGGAAGCTGAGGAAATTG
GAGTGGAGCACCTTCTCCGGGATATCAGGGATGTCGCTGTCGGAACCCTC
TCCACCCGCATAACGTCGCAGCTTCAGTCGCTGCAGGGTCTGCACCTGCG
TTTGCGCGACATCGGCCAATACCTGCAGAAGGTTCTTGACCACGAACTCC
CCGTCAACCACGCCATTTTGGGCAACCTCCAGGACGTCTTCAACCTCCTC
CCCAACCTTTCCACACCAGCCGCCACGCCGCGCATCAGCGGCGCGCCCGA
ACAGCCGACGGAGAACAGCGAGCTCGCACGGGCCATGAGCATCAAGACCA
ACGATCAATTAATGGCGATCTACTTGAGCAGCTTGATCCGCGCCATCACC
GCATTCCACGACTTGATCGAGAACAAGATCCAGAACCGGCAGCAACAAGA
AGAGAACGAGCTGAAGAGGGAACAGGAGGCCAACGCGGCCAAGACCGAGA
AGGAGGCCGCGAAGAAGGCCAACAGTGCCGCCAATGGAGAGCAGAAGGAG
GGTCAAGACAAGGAGAAGGCCAAGAAGAGCCAGAAGGAGTAGATGCCTGC
CACCACGGCGGACGCCCTTTCCCTCGTTCAGCGCACCGTCACGGTCGCTC
CGCTAGTTCTTCTCTCCGTCGCAGATCACTACGGCCGCTCGGCCAAGGGT
ACCCGGAAACGTGTGGTTGGTGTGCTGCTGGGTGAGAACTCGGGCCAGAA
TGTCCGGGTATCGAACAGCTTTGCGGTACCCTTCGAGGAAGATGAGAAGG
ACCCCTCCGTTTGGTTCCTAGATCACAACTTTGTCGAGTCGATGAGGGAC
ATGTTCAAGAAGATCAATGCTCGTGAGAAGCTGGTTGGATGGTATCACTC
GGGCCCGAAGCTGCGGGCCTCGGATTTGGAAATCAACGAACTCTTCAAGC
GCTACACACCGAACCCTCTGCTGGTGATTGTGGATGTCCAACCGAAGGAA
GTCGGCGTTCCTACGGATGCTTACTTTGCTGTGGATGAGATCAAGGATGA
TGGCACCACAACATCAAAGACCTTCGTCCACACCCCGTCTATAATCGAAG
CTGAGGAAGCTGAGGAAATTGGAGTGGAGCACCTTCTCCGGGATATCAGG
GATGTCGCTGTCGGAACCCTCTCCACCCGCATAACGTCGCAGCTTCAGTC
GCTGCAGGGTCTGCACCTGCGTTTGCGCGACATCGGCCAATACCTGCAGA
AGGTTCTTGACCACGAACTCCCCGTCAACCACGCCATTTTGGGCAACCTC
CAGGACGTCTTCAACCTCCTCCCCAACCTTTCCACACCAGCCGCCACGCC
GCGCATCAGCGGCGCGCCCGAACAGCCGACGGAGAACAGCGAGCTCGCAC
GGGCCATGAGCATCAAGACCAACGATCAATTAATGGCGATCTACTTGAGC
AGCTTGATCCGCGCCATCACCGCATTCCACGACTTGATCGAGAACAAGAT
CCAGAACCGGCAGCAACAAGAAGAGAACGAGCTGAAGAGGGAACAGGAGG
CCAACGCGGCCAAGACCGAGAAGGAGGCCGCGAAGAAGGCCAACAGTGCC
GCCAATGGAGAGCAGAAGGAGGGTCAAGACAAGGAGAAGGCCAAGAAGAG
CCAGAAGGAGTAG
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Annotated Terms
The following terms have been associated with this mRNA:
Vocabulary: Cellular Component
TermDefinition
GO:0005838proteasome regulatory particle
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
RPN8ASPNIDRAFT_209239Aspergillus niger ATCC 1015gene


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
ASPNIDRAFT_209239-T1.utr5p1ASPNIDRAFT_209239-T1.utr5p1Aspergillus niger ATCC 1015five_prime_UTR


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
ASPNIDRAFT_209239-T1.exon1ASPNIDRAFT_209239-T1.exon1Aspergillus niger ATCC 1015exon
ASPNIDRAFT_209239-T1.exon2ASPNIDRAFT_209239-T1.exon2Aspergillus niger ATCC 1015exon
ASPNIDRAFT_209239-T1.exon3ASPNIDRAFT_209239-T1.exon3Aspergillus niger ATCC 1015exon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
ASPNIDRAFT_209239-T1.cdsASPNIDRAFT_209239-T1.cdsAspergillus niger ATCC 1015CDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
ASPNIDRAFT_209239-T1ASPNIDRAFT_209239-T1-proteinAspergillus niger ATCC 1015polypeptide


Properties
Property NameValue
NoteBUSCO:EOG09263KRO
NoteMEROPS:MER0030134
DBxrefInterPro:IPR033858
DBxrefInterPro:IPR037518
DBxrefInterPro:IPR024969
DBxrefInterPro:IPR000555
DBxrefPFAM:PF13012
DBxrefPFAM:PF01398
Productproteasome regulatory particle subunit
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Aspergillus niger ATCC 1015 whole genome analysis2021-11-01
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ACJE01000009.1supercontigACJE01000009.1:2374345..2375720 +
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