You are here

Home

ASPNIDRAFT_209349-T1, ASPNIDRAFT_209349-T1 (mRNA) Aspergillus niger ATCC 1015

Overview
NameASPNIDRAFT_209349-T1
Unique NameASPNIDRAFT_209349-T1
TypemRNA
OrganismAspergillus niger ATCC 1015
Sequences
The following sequences are available for this feature:

mRNA from alignment at ACJE01000009.1:2127441..2128414-

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>ASPNIDRAFT_209349-T1 ID=ASPNIDRAFT_209349-T1|Name=ASPNIDRAFT_209349-T1|organism=Aspergillus niger ATCC 1015|type=mRNA|length=974bp|location=Sequence derived from alignment at ACJE01000009.1:2127441..2128414- (Aspergillus niger ATCC 1015)
GTTCTCACCTTTCACCCCTTCGCCTCTGCTTTCTCCAGTTCTACTTCCCT
GCCCCTGAGCACGGCCACCTCTCCGCTCCTCCCCTCCTTCTTGCCTGCTT
GTTAGCACCCTTTTCGAGTCTTTCGAGCATCTCTTTTTCACTCTGCCCAC
CATGTCCGGTGAAGCCTGGCTCTATCTGCTGGCGGTGTTGATTAACGCCG
TCAACCTGTTCCTGCAGGTCTTCTTTACTATCATGTACAGCGATCTGGAA
TGGTATGATCTGGCTCTATCCTCCCTCTTGTCTCGCCGATTTCTGTCGTG
TGCGTGGACGAGCTCTTGTGAGCCGCATGGGAGCTCGCCATGGATTGCGA
CAGCGTGATGGAACCCAACCAGCTAACGAACCCGGTTCGCTCCCGCAGTG
ACTACATCAACCCCATTGATCTGTGCAACCGCCTCAACGCCTACATTGTT
CCCGAAGCCGCCGTTCACGCTTTCTTGACCTTCCTGTTCATCATCAATGG
CTACTGGGTCGCCATCGTCCTGAACCTGCCTCTGTTGGCGTTCAATGCTA
AGAAGTAATGCTGTCTTTTCCAGCTCCGCCATGCTGCAGCCCAACTAACA
CAACCGCCCTTTCTGCAGGATCTACGAGAACCAGCACCTCCTGGATGCGA
CCGAGATCTTCCGCAAGCTGAACGTCCACAAGAAGGTTAGACTGCACTGT
CCCAATCCCGCTACCAGGGCGGACCGACCGCTGACGCAAACTGCAGGAAT
CTTTCATCAAGCTGGGCTTCCACCTCCTGATGTTCTTCTTCTACCTCTAC
AGCATGATCGTCGCCTTGATCCGCGACGAGTCTCACTGACTTCGTGGCAA
GACGGAACACGCACTGCGCAACGGCCGCCCGGGCTGAAGTGTCATGTAGT
GCGAATGTCTTGACTTCTCCTTTGGCTAGAGAAGATTGGACGGAGCATGG
TTCTGCGAGTATCTGTCTCGCTGC
back to top

Coding sequence (CDS) from alignment at ACJE01000009.1:2127441..2128414-

>ASPNIDRAFT_209349-T1 ID=ASPNIDRAFT_209349-T1|Name=ASPNIDRAFT_209349-T1|organism=Aspergillus niger ATCC 1015|type=CDS|length=1668bp|location=Sequence derived from alignment at ACJE01000009.1:2127441..2128414- (Aspergillus niger ATCC 1015)
GAATCTTTCATCAAGCTGGGCTTCCACCTCCTGATGTTCTTCTTCTACCT
CTACAGCATGATCGTCGCCTTGATCCGCGACGAGTCTCACTGAGATCTAC
GAGAACCAGCACCTCCTGGATGCGACCGAGATCTTCCGCAAGCTGAACGT
CCACAAGAAGTGACTACATCAACCCCATTGATCTGTGCAACCGCCTCAAC
GCCTACATTGTTCCCGAAGCCGCCGTTCACGCTTTCTTGACCTTCCTGTT
CATCATCAATGGCTACTGGGTCGCCATCGTCCTGAACCTGCCTCTGTTGG
CGTTCAATGCTAAGAAATGTCCGGTGAAGCCTGGCTCTATCTGCTGGCGG
TGTTGATTAACGCCGTCAACCTGTTCCTGCAGGTCTTCTTTACTATCATG
TACAGCGATCTGGAATGGAATCTTTCATCAAGCTGGGCTTCCACCTCCTG
ATGTTCTTCTTCTACCTCTACAGCATGATCGTCGCCTTGATCCGCGACGA
GTCTCACTGAGATCTACGAGAACCAGCACCTCCTGGATGCGACCGAGATC
TTCCGCAAGCTGAACGTCCACAAGAAGTGACTACATCAACCCCATTGATC
TGTGCAACCGCCTCAACGCCTACATTGTTCCCGAAGCCGCCGTTCACGCT
TTCTTGACCTTCCTGTTCATCATCAATGGCTACTGGGTCGCCATCGTCCT
GAACCTGCCTCTGTTGGCGTTCAATGCTAAGAAATGTCCGGTGAAGCCTG
GCTCTATCTGCTGGCGGTGTTGATTAACGCCGTCAACCTGTTCCTGCAGG
TCTTCTTTACTATCATGTACAGCGATCTGGAATGGAATCTTTCATCAAGC
TGGGCTTCCACCTCCTGATGTTCTTCTTCTACCTCTACAGCATGATCGTC
GCCTTGATCCGCGACGAGTCTCACTGAGATCTACGAGAACCAGCACCTCC
TGGATGCGACCGAGATCTTCCGCAAGCTGAACGTCCACAAGAAGTGACTA
CATCAACCCCATTGATCTGTGCAACCGCCTCAACGCCTACATTGTTCCCG
AAGCCGCCGTTCACGCTTTCTTGACCTTCCTGTTCATCATCAATGGCTAC
TGGGTCGCCATCGTCCTGAACCTGCCTCTGTTGGCGTTCAATGCTAAGAA
ATGTCCGGTGAAGCCTGGCTCTATCTGCTGGCGGTGTTGATTAACGCCGT
CAACCTGTTCCTGCAGGTCTTCTTTACTATCATGTACAGCGATCTGGAAT
GGAATCTTTCATCAAGCTGGGCTTCCACCTCCTGATGTTCTTCTTCTACC
TCTACAGCATGATCGTCGCCTTGATCCGCGACGAGTCTCACTGAGATCTA
CGAGAACCAGCACCTCCTGGATGCGACCGAGATCTTCCGCAAGCTGAACG
TCCACAAGAAGTGACTACATCAACCCCATTGATCTGTGCAACCGCCTCAA
CGCCTACATTGTTCCCGAAGCCGCCGTTCACGCTTTCTTGACCTTCCTGT
TCATCATCAATGGCTACTGGGTCGCCATCGTCCTGAACCTGCCTCTGTTG
GCGTTCAATGCTAAGAAATGTCCGGTGAAGCCTGGCTCTATCTGCTGGCG
GTGTTGATTAACGCCGTCAACCTGTTCCTGCAGGTCTTCTTTACTATCAT
GTACAGCGATCTGGAATG
back to top
Annotated Terms
The following terms have been associated with this mRNA:
Vocabulary: Biological Process
TermDefinition
GO:0016192vesicle-mediated transport
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
ERV14ASPNIDRAFT_209349Aspergillus niger ATCC 1015gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
ASPNIDRAFT_209349-T1ASPNIDRAFT_209349-T1-proteinAspergillus niger ATCC 1015polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
ASPNIDRAFT_209349-T1.cdsASPNIDRAFT_209349-T1.cdsAspergillus niger ATCC 1015CDS


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
ASPNIDRAFT_209349-T1.utr3p1ASPNIDRAFT_209349-T1.utr3p1Aspergillus niger ATCC 1015three_prime_UTR


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
ASPNIDRAFT_209349-T1.exon4ASPNIDRAFT_209349-T1.exon4Aspergillus niger ATCC 1015exon
ASPNIDRAFT_209349-T1.exon3ASPNIDRAFT_209349-T1.exon3Aspergillus niger ATCC 1015exon
ASPNIDRAFT_209349-T1.exon2ASPNIDRAFT_209349-T1.exon2Aspergillus niger ATCC 1015exon
ASPNIDRAFT_209349-T1.exon1ASPNIDRAFT_209349-T1.exon1Aspergillus niger ATCC 1015exon


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
ASPNIDRAFT_209349-T1.utr5p1ASPNIDRAFT_209349-T1.utr5p1Aspergillus niger ATCC 1015five_prime_UTR


Properties
Property NameValue
DBxrefInterPro:IPR033466
DBxrefInterPro:IPR003377
DBxrefPFAM:PF03311
ProductCOPII-coated vesicle protein
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Aspergillus niger ATCC 1015 whole genome analysis2021-11-01
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ACJE01000009.1supercontigACJE01000009.1:2127441..2128414 -
Powered by Drupal