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Sequences
The following sequences are available for this feature:
mRNA from alignment at ACJE01000013.1:1060441..1061760+ Legend: five_prime_UTRexonpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >ASPNIDRAFT_210620-T1 ID=ASPNIDRAFT_210620-T1|Name=ASPNIDRAFT_210620-T1|organism=Aspergillus niger ATCC 1015|type=mRNA|length=1320bp|location=Sequence derived from alignment at ACJE01000013.1:1060441..1061760+ (Aspergillus niger ATCC 1015)
ATTTCTGGGTTGCAAAGGAACTGCTGTAGTCGCTGCTTGCTGAACCCTTC
CAGAGCAATCATGTCAGCCGCTACCGATAAGGCACGCTTCTTTCTGGAGA
AGTCGGTCCCTGAGCTCAAGGAGTTTGAGCGGAAGAAAATCTTCTCCAAG
GTAAATTGGTGCCCATGATCATTATCTACCCACATCGATGCGCTTAGGAA
ACTGACATGCCGTTTGATCTGCCTGCAGGAGGAAATTACAGCCATCATCA
AGAAACGGTCCGATTTTGAGCACAAGCTGAATGCACGTGGCGCCCTGCCT
GTTGACTTCGTCCGATATGCGCAATACGAGATGAACCTAGACACCCTGCG
CCGGAAGAGGGTGAAGCGGTTGGGAATCAGATCGGCAGGATACACTGGGC
AAAGGCGCATCTTCTTCATCCTTGACCGCGCAACTCGCAAGTTTCATGGT
GATGTGGGCTTGTGGGTGCAGTACCTCGAATACGCGAAACAACAGAAAGC
CTACAAAAAGGTCTCGACCATCCTTACGGACGCCTTGCGGTTACATCCCG
CCAACGTCGACTTGTGGCTATATGCTGCGCAGTACTCTGTGGATGAGCAT
GCGGATATGACACAATCTAGGGGTTACATGCAGCGCGGTTTGCGCTTCTG
CAAAAGCTCCAAGAAGCTGTGGCTCCACTATGCCAAACTGGAATTGATAT
ATATCGCCAAGCTGGTTGCTCGACAGCGGATCTTGGGTCTCGATAAGCCG
ATCGAAGCCCCGAAGCCAGCGCAGGAGGACGATTTAGATGCCGACATGAT
TGCTATGCCCAAGATCACTGGAGAAGATATCAACCCCGGCGCTGGAGAGG
ATGGCGGTGTGGATCAAGTGGCTTTGGACAACCTTGCCAACACCCCAGCC
CTGAGTGGTGCTATCCCTCTCGCCATCTTCGATACGGCCATGAAGAACTT
CGAAAATGACGACCGTTTCGGTCATGAGTTCTACGATATGGCGGTCGAGT
TCGACGACCTGCCCTGTCTGCACAAAATTCTCGGCCATGTGGTCGACGTG
ATGCAGCAGACCAAGCCAAACAGTCCTCATACGCAAATTTGCTACATCAA
ATTCCCCACCGCTGGACTCCGGGTTACTTCACCCGAATTCCCACGTGCGT
TTAGTGCGTCATTTGCCCGTCTCAAGGAGTACCGGAATAACCCCAACGTC
GCCAAGGAGATCGTCAGCTGGCTACAGCCCCTTGAGAAGACAGAAGGCGT
GGATGCCTCCCTCCAAAAGGCGATTTCGGCCACTATCCGTAATGCGGAAC
GCACTGTACAGGAAGCATAG back to topCoding sequence (CDS) from alignment at ACJE01000013.1:1060441..1061760+ >ASPNIDRAFT_210620-T1 ID=ASPNIDRAFT_210620-T1|Name=ASPNIDRAFT_210620-T1|organism=Aspergillus niger ATCC 1015|type=CDS|length=2364bp|location=Sequence derived from alignment at ACJE01000013.1:1060441..1061760+ (Aspergillus niger ATCC 1015)
ATGTCAGCCGCTACCGATAAGGCACGCTTCTTTCTGGAGAAGTCGGTCCC
TGAGCTCAAGGAGTTTGAGCGGAAGAAAATCTTCTCCAAGGAGGAAATTA
CAGCCATCATCAAGAAACGGTCCGATTTTGAGCACAAGCTGAATGCACGT
GGCGCCCTGCCTGTTGACTTCGTCCGATATGCGCAATACGAGATGAACCT
AGACACCCTGCGCCGGAAGAGGGTGAAGCGGTTGGGAATCAGATCGGCAG
GATACACTGGGCAAAGGCGCATCTTCTTCATCCTTGACCGCGCAACTCGC
AAGTTTCATGGTGATGTGGGCTTGTGGGTGCAGTACCTCGAATACGCGAA
ACAACAGAAAGCCTACAAAAAGGTCTCGACCATCCTTACGGACGCCTTGC
GGTTACATCCCGCCAACGTCGACTTGTGGCTATATGCTGCGCAGTACTCT
GTGGATGAGCATGCGGATATGACACAATCTAGGGGTTACATGCAGCGCGG
TTTGCGCTTCTGCAAAAGCTCCAAGAAGCTGTGGCTCCACTATGCCAAAC
TGGAATTGATATATATCGCCAAGCTGGTTGCTCGACAGCGGATCTTGGGT
CTCGATAAGCCGATCGAAGCCCCGAAGCCAGCGCAGGAGGACGATTTAGA
TGCCGACATGATTGCTATGCCCAAGATCACTGGAGAAGATATCAACCCCG
GCGCTGGAGAGGATGGCGGTGTGGATCAAGTGGCTTTGGACAACCTTGCC
AACACCCCAGCCCTGAGTGGTGCTATCCCTCTCGCCATCTTCGATACGGC
CATGAAGAACTTCGAAAATGACGACCGTTTCGGTCATGAGTTCTACGATA
TGGCGGTCGAGTTCGACGACCTGCCCTGTCTGCACAAAATTCTCGGCCAT
GTGGTCGACGTGATGCAGCAGACCAAGCCAAACAGTCCTCATACGCAAAT
TTGCTACATCAAATTCCCCACCGCTGGACTCCGGGTTACTTCACCCGAAT
TCCCACGTGCGTTTAGTGCGTCATTTGCCCGTCTCAAGGAGTACCGGAAT
AACCCCAACGTCGCCAAGGAGATCGTCAGCTGGCTACAGCCCCTTGAGAA
GACAGAAGGCGTGGATGCCTCCCTCCAAAAGGCGATTTCGGCCACTATCC
GTAATGCGGAACGCACTGTACAGGAAGCATAGATGTCAGCCGCTACCGAT
AAGGCACGCTTCTTTCTGGAGAAGTCGGTCCCTGAGCTCAAGGAGTTTGA
GCGGAAGAAAATCTTCTCCAAGGAGGAAATTACAGCCATCATCAAGAAAC
GGTCCGATTTTGAGCACAAGCTGAATGCACGTGGCGCCCTGCCTGTTGAC
TTCGTCCGATATGCGCAATACGAGATGAACCTAGACACCCTGCGCCGGAA
GAGGGTGAAGCGGTTGGGAATCAGATCGGCAGGATACACTGGGCAAAGGC
GCATCTTCTTCATCCTTGACCGCGCAACTCGCAAGTTTCATGGTGATGTG
GGCTTGTGGGTGCAGTACCTCGAATACGCGAAACAACAGAAAGCCTACAA
AAAGGTCTCGACCATCCTTACGGACGCCTTGCGGTTACATCCCGCCAACG
TCGACTTGTGGCTATATGCTGCGCAGTACTCTGTGGATGAGCATGCGGAT
ATGACACAATCTAGGGGTTACATGCAGCGCGGTTTGCGCTTCTGCAAAAG
CTCCAAGAAGCTGTGGCTCCACTATGCCAAACTGGAATTGATATATATCG
CCAAGCTGGTTGCTCGACAGCGGATCTTGGGTCTCGATAAGCCGATCGAA
GCCCCGAAGCCAGCGCAGGAGGACGATTTAGATGCCGACATGATTGCTAT
GCCCAAGATCACTGGAGAAGATATCAACCCCGGCGCTGGAGAGGATGGCG
GTGTGGATCAAGTGGCTTTGGACAACCTTGCCAACACCCCAGCCCTGAGT
GGTGCTATCCCTCTCGCCATCTTCGATACGGCCATGAAGAACTTCGAAAA
TGACGACCGTTTCGGTCATGAGTTCTACGATATGGCGGTCGAGTTCGACG
ACCTGCCCTGTCTGCACAAAATTCTCGGCCATGTGGTCGACGTGATGCAG
CAGACCAAGCCAAACAGTCCTCATACGCAAATTTGCTACATCAAATTCCC
CACCGCTGGACTCCGGGTTACTTCACCCGAATTCCCACGTGCGTTTAGTG
CGTCATTTGCCCGTCTCAAGGAGTACCGGAATAACCCCAACGTCGCCAAG
GAGATCGTCAGCTGGCTACAGCCCCTTGAGAAGACAGAAGGCGTGGATGC
CTCCCTCCAAAAGGCGATTTCGGCCACTATCCGTAATGCGGAACGCACTG
TACAGGAAGCATAG back to top
Annotated Terms
The following terms have been associated with this mRNA:
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0005515 | protein binding |
| GO:0030515 | snoRNA binding |
Vocabulary: Biological Process
| Term | Definition |
|---|
| GO:0000462 | maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) |
| GO:0006396 | RNA processing |
Relationships
This mRNA is a part of the following gene feature(s):
The following five_prime_UTR feature(s) are a part of this mRNA:
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Properties
| Property Name | Value |
|---|
| DBxref | InterPro:IPR011990 |
| DBxref | InterPro:IPR013949 |
| DBxref | InterPro:IPR003107 |
| DBxref | PFAM:PF08640 |
| Product | hypothetical protein |
Analyses
This mRNA is derived from or has results from the following analyses
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| ACJE01000013.1 | supercontig | ACJE01000013.1:1060441..1061760 + |
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