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ASPNIDRAFT_212323-T1, ASPNIDRAFT_212323-T1 (mRNA) Aspergillus niger ATCC 1015

Overview
NameASPNIDRAFT_212323-T1
Unique NameASPNIDRAFT_212323-T1
TypemRNA
OrganismAspergillus niger ATCC 1015
Sequences
The following sequences are available for this feature:

mRNA from alignment at ACJE01000001.1:1607012..1608566+

Legend: five_prime_UTRexonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>ASPNIDRAFT_212323-T1 ID=ASPNIDRAFT_212323-T1|Name=ASPNIDRAFT_212323-T1|organism=Aspergillus niger ATCC 1015|type=mRNA|length=1555bp|location=Sequence derived from alignment at ACJE01000001.1:1607012..1608566+ (Aspergillus niger ATCC 1015)
CTTGGGTTGACGCACTCGCTTCCTTTTAGTGCAAGCATGGTCGATTCCGA
TGAAGAGTACATAGGAGAAATCTCTGAGGATGAGGATGAAAACAATCTTC
TACCAGGGTCTCGCGGAGAGACTACGTCCGCATCCCGCTCCAAGAGGAGA
AAGCACCGTGGAGGCGCAGAATGGGAGGTCTCGAGAACATGGGAAACCTT
AGTTGAAGGTGCCGACGGTACAATCAGCTCTACAGTTGAAGGGCTTCTCG
AGGCTGGGAAAAGGAAAAGGTAGGGTGTACTTTCAAGCCGAGTTAGTCTC
AGTTTTGATAACGGTTCGAGCTGAGTTCCATGTCTTCGCGCTTGCAGGCT
CCTCAGAGATACGACTCCTTTACAACGGGGTATAATCCGTCATCTCATCT
TGATTATAGATCTGTCACAATCTATGACCGAGAAAGATCTCCGACCGACA
CGTTACTTATTGTCCTTACGGTATGCACAAGAGTTCGTGAGGGAATTTTT
CGAGCAAAATCCCATCTCTCAACTCGGCGTTCTTGGCCTCAAAGATGGAC
TGGCGGTCAGAGTCAGTGATATGAGTGGAAACCCTACTGAGCATATTAGT
GCCATCCAATCACTGCGAGACCAGGATCCGAAAGGTCTTCCTAGTCTGCA
AAATGGCTTCGAAATGGCTCGTGGTGCCTTGTTGTATGTCTTTTCCACGG
TAGCGTCGTACACACTCAATGATAAGGTGGACTAATTTGTCTTGCAACAG
CCATACTCCAAGCCATGGCACCCGTGAGATCTTCGTCATTTTTGGCTCCC
TCCTTTCCTCTGATCCCGGTGATATTCACCAAACAATTACTACGCTTATA
AATGATAAAATACGTGTTGGAATCGTGGGCCTTGCTGCTCAAGTGGCAAT
CTGTCGCGAAATTTGTGGCAAGACTAACGGGGGCGACGATACCACATACG
GTGTAGCACTCAATGAACAACATTTCCGTGACCTTGTGATGAATGTGACA
ACACCACCAGCCACATACTCTCAGAAGCAGTCCACAAGCTCTCTCTTGAT
GATGGGTTTTCCATCACGAACCGTTGAGGCTTACCCTTCACTTTGTGCAT
GCCATTCCAAGCCTTCTCGTGGGGGCTATCTGTGCTCACGGTGCAACAGC
AAGGTTTGTGGTCTCCCTGCCGAGTGTCCTTCCTGTGGTCTTACTTTGAT
TCTTTCAACCCATCTTGCTCGGTCGTATCACCATCTGTTTCCCCTTATGA
ACTGGGTGGAAGTTTCGTGGCAACACGCTTCACGCAGTAGTGTCTGTTTC
GCTTGTGGGATATCCTTTCCATCAGTACCACCCAAGGAGCAGTGGCATAC
TACAGAGGGACAAACAAAGGGAATAAGCGTAAGCAGCCGCTATGAATGTA
CTGTTTGCAGAAACCATTTTTGCATTGACTGTGACCTTTTCGCTCATGAG
GTTGTGCACAACTGCCCTGGCTGCCAAAGCAAGATGATAGTTGCCACGAG
TTCTGAGCCCTCTCAGGACCACGAAGCTCTAGACAGGATGGATACCTCTG
CATGA
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Coding sequence (CDS) from alignment at ACJE01000001.1:1607012..1608566+

>ASPNIDRAFT_212323-T1 ID=ASPNIDRAFT_212323-T1|Name=ASPNIDRAFT_212323-T1|organism=Aspergillus niger ATCC 1015|type=CDS|length=4122bp|location=Sequence derived from alignment at ACJE01000001.1:1607012..1608566+ (Aspergillus niger ATCC 1015)
ATGGTCGATTCCGATGAAGAGTACATAGGAGAAATCTCTGAGGATGAGGA
TGAAAACAATCTTCTACCAGGGTCTCGCGGAGAGACTACGTCCGCATCCC
GCTCCAAGAGGAGAAAGCACCGTGGAGGCGCAGAATGGGAGGTCTCGAGA
ACATGGGAAACCTTAGTTGAAGGTGCCGACGGTACAATCAGCTCTACAGT
TGAAGGGCTTCTCGAGGCTGGGAAAAGGAAAAGGCTCCTCAGAGATACGA
CTCCTTTACAACGGGGTATAATCCGTCATCTCATCTTGATTATAGATCTG
TCACAATCTATGACCGAGAAAGATCTCCGACCGACACGTTACTTATTGTC
CTTACGGTATGCACAAGAGTTCGTGAGGGAATTTTTCGAGCAAAATCCCA
TCTCTCAACTCGGCGTTCTTGGCCTCAAAGATGGACTGGCGGTCAGAGTC
AGTGATATGAGTGGAAACCCTACTGAGCATATTAGTGCCATCCAATCACT
GCGAGACCAGGATCCGAAAGGTCTTCCTAGTCTGCAAAATGGCTTCGAAA
TGGCTCGTGGTGCCTTGTTCCATACTCCAAGCCATGGCACCCGTGAGATC
TTCGTCATTTTTGGCTCCCTCCTTTCCTCTGATCCCGGTGATATTCACCA
AACAATTACTACGCTTATAAATGATAAAATACGTGTTGGAATCGTGGGCC
TTGCTGCTCAAGTGGCAATCTGTCGCGAAATTTGTGGCAAGACTAACGGG
GGCGACGATACCACATACGGTGTAGCACTCAATGAACAACATTTCCGTGA
CCTTGTGATGAATGTGACAACACCACCAGCCACATACTCTCAGAAGCAGT
CCACAAGCTCTCTCTTGATGATGGGTTTTCCATCACGAACCGTTGAGGCT
TACCCTTCACTTTGTGCATGCCATTCCAAGCCTTCTCGTGGGGGCTATCT
GTGCTCACGGTGCAACAGCAAGGTTTGTGGTCTCCCTGCCGAGTGTCCTT
CCTGTGGTCTTACTTTGATTCTTTCAACCCATCTTGCTCGGTCGTATCAC
CATCTGTTTCCCCTTATGAACTGGGTGGAAGTTTCGTGGCAACACGCTTC
ACGCAGTAGTGTCTGTTTCGCTTGTGGGATATCCTTTCCATCAGTACCAC
CCAAGGAGCAGTGGCATACTACAGAGGGACAAACAAAGGGAATAAGCGTA
AGCAGCCGCTATGAATGTACTGTTTGCAGAAACCATTTTTGCATTGACTG
TGACCTTTTCGCTCATGAGGTTGTGCACAACTGCCCTGGCTGCCAAAGCA
AGATGATAGTTGCCACGAGTTCTGAGCCCTCTCAGGACCACGAAGCTCTA
GACAGGATGGATACCTCTGCATGAATGGTCGATTCCGATGAAGAGTACAT
AGGAGAAATCTCTGAGGATGAGGATGAAAACAATCTTCTACCAGGGTCTC
GCGGAGAGACTACGTCCGCATCCCGCTCCAAGAGGAGAAAGCACCGTGGA
GGCGCAGAATGGGAGGTCTCGAGAACATGGGAAACCTTAGTTGAAGGTGC
CGACGGTACAATCAGCTCTACAGTTGAAGGGCTTCTCGAGGCTGGGAAAA
GGAAAAGGCTCCTCAGAGATACGACTCCTTTACAACGGGGTATAATCCGT
CATCTCATCTTGATTATAGATCTGTCACAATCTATGACCGAGAAAGATCT
CCGACCGACACGTTACTTATTGTCCTTACGGTATGCACAAGAGTTCGTGA
GGGAATTTTTCGAGCAAAATCCCATCTCTCAACTCGGCGTTCTTGGCCTC
AAAGATGGACTGGCGGTCAGAGTCAGTGATATGAGTGGAAACCCTACTGA
GCATATTAGTGCCATCCAATCACTGCGAGACCAGGATCCGAAAGGTCTTC
CTAGTCTGCAAAATGGCTTCGAAATGGCTCGTGGTGCCTTGTTCCATACT
CCAAGCCATGGCACCCGTGAGATCTTCGTCATTTTTGGCTCCCTCCTTTC
CTCTGATCCCGGTGATATTCACCAAACAATTACTACGCTTATAAATGATA
AAATACGTGTTGGAATCGTGGGCCTTGCTGCTCAAGTGGCAATCTGTCGC
GAAATTTGTGGCAAGACTAACGGGGGCGACGATACCACATACGGTGTAGC
ACTCAATGAACAACATTTCCGTGACCTTGTGATGAATGTGACAACACCAC
CAGCCACATACTCTCAGAAGCAGTCCACAAGCTCTCTCTTGATGATGGGT
TTTCCATCACGAACCGTTGAGGCTTACCCTTCACTTTGTGCATGCCATTC
CAAGCCTTCTCGTGGGGGCTATCTGTGCTCACGGTGCAACAGCAAGGTTT
GTGGTCTCCCTGCCGAGTGTCCTTCCTGTGGTCTTACTTTGATTCTTTCA
ACCCATCTTGCTCGGTCGTATCACCATCTGTTTCCCCTTATGAACTGGGT
GGAAGTTTCGTGGCAACACGCTTCACGCAGTAGTGTCTGTTTCGCTTGTG
GGATATCCTTTCCATCAGTACCACCCAAGGAGCAGTGGCATACTACAGAG
GGACAAACAAAGGGAATAAGCGTAAGCAGCCGCTATGAATGTACTGTTTG
CAGAAACCATTTTTGCATTGACTGTGACCTTTTCGCTCATGAGGTTGTGC
ACAACTGCCCTGGCTGCCAAAGCAAGATGATAGTTGCCACGAGTTCTGAG
CCCTCTCAGGACCACGAAGCTCTAGACAGGATGGATACCTCTGCATGAAT
GGTCGATTCCGATGAAGAGTACATAGGAGAAATCTCTGAGGATGAGGATG
AAAACAATCTTCTACCAGGGTCTCGCGGAGAGACTACGTCCGCATCCCGC
TCCAAGAGGAGAAAGCACCGTGGAGGCGCAGAATGGGAGGTCTCGAGAAC
ATGGGAAACCTTAGTTGAAGGTGCCGACGGTACAATCAGCTCTACAGTTG
AAGGGCTTCTCGAGGCTGGGAAAAGGAAAAGGCTCCTCAGAGATACGACT
CCTTTACAACGGGGTATAATCCGTCATCTCATCTTGATTATAGATCTGTC
ACAATCTATGACCGAGAAAGATCTCCGACCGACACGTTACTTATTGTCCT
TACGGTATGCACAAGAGTTCGTGAGGGAATTTTTCGAGCAAAATCCCATC
TCTCAACTCGGCGTTCTTGGCCTCAAAGATGGACTGGCGGTCAGAGTCAG
TGATATGAGTGGAAACCCTACTGAGCATATTAGTGCCATCCAATCACTGC
GAGACCAGGATCCGAAAGGTCTTCCTAGTCTGCAAAATGGCTTCGAAATG
GCTCGTGGTGCCTTGTTCCATACTCCAAGCCATGGCACCCGTGAGATCTT
CGTCATTTTTGGCTCCCTCCTTTCCTCTGATCCCGGTGATATTCACCAAA
CAATTACTACGCTTATAAATGATAAAATACGTGTTGGAATCGTGGGCCTT
GCTGCTCAAGTGGCAATCTGTCGCGAAATTTGTGGCAAGACTAACGGGGG
CGACGATACCACATACGGTGTAGCACTCAATGAACAACATTTCCGTGACC
TTGTGATGAATGTGACAACACCACCAGCCACATACTCTCAGAAGCAGTCC
ACAAGCTCTCTCTTGATGATGGGTTTTCCATCACGAACCGTTGAGGCTTA
CCCTTCACTTTGTGCATGCCATTCCAAGCCTTCTCGTGGGGGCTATCTGT
GCTCACGGTGCAACAGCAAGGTTTGTGGTCTCCCTGCCGAGTGTCCTTCC
TGTGGTCTTACTTTGATTCTTTCAACCCATCTTGCTCGGTCGTATCACCA
TCTGTTTCCCCTTATGAACTGGGTGGAAGTTTCGTGGCAACACGCTTCAC
GCAGTAGTGTCTGTTTCGCTTGTGGGATATCCTTTCCATCAGTACCACCC
AAGGAGCAGTGGCATACTACAGAGGGACAAACAAAGGGAATAAGCGTAAG
CAGCCGCTATGAATGTACTGTTTGCAGAAACCATTTTTGCATTGACTGTG
ACCTTTTCGCTCATGAGGTTGTGCACAACTGCCCTGGCTGCCAAAGCAAG
ATGATAGTTGCCACGAGTTCTGAGCCCTCTCAGGACCACGAAGCTCTAGA
CAGGATGGATACCTCTGCATGA
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Annotated Terms
The following terms have been associated with this mRNA:
Vocabulary: Cellular Component
TermDefinition
GO:0000439transcription factor TFIIH core complex
Vocabulary: Molecular Function
TermDefinition
GO:0003676nucleic acid binding
GO:0008270zinc ion binding
Vocabulary: Biological Process
TermDefinition
GO:0006289nucleotide-excision repair
GO:0006351transcription, DNA-templated
GO:0006281DNA repair
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
ASPNIDRAFT_212323ASPNIDRAFT_212323Aspergillus niger ATCC 1015gene


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
ASPNIDRAFT_212323-T1.utr5p1ASPNIDRAFT_212323-T1.utr5p1Aspergillus niger ATCC 1015five_prime_UTR


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
ASPNIDRAFT_212323-T1.exon1ASPNIDRAFT_212323-T1.exon1Aspergillus niger ATCC 1015exon
ASPNIDRAFT_212323-T1.exon2ASPNIDRAFT_212323-T1.exon2Aspergillus niger ATCC 1015exon
ASPNIDRAFT_212323-T1.exon3ASPNIDRAFT_212323-T1.exon3Aspergillus niger ATCC 1015exon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
ASPNIDRAFT_212323-T1.cdsASPNIDRAFT_212323-T1.cdsAspergillus niger ATCC 1015CDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
ASPNIDRAFT_212323-T1ASPNIDRAFT_212323-T1-proteinAspergillus niger ATCC 1015polypeptide


Properties
Property NameValue
NoteBUSCO:EOG09262ILV
DBxrefInterPro:IPR013087
DBxrefInterPro:IPR007198
DBxrefInterPro:IPR012170
DBxrefInterPro:IPR036465
DBxrefInterPro:IPR013083
DBxrefInterPro:IPR002035
DBxrefInterPro:IPR004595
DBxrefPFAM:PF13519
DBxrefPFAM:PF00092
DBxrefPFAM:PF04056
DBxrefPFAM:PF07975
Producthypothetical protein
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Aspergillus niger ATCC 1015 whole genome analysis2021-11-01
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ACJE01000001.1supercontigACJE01000001.1:1607012..1608566 +
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