|
|
Sequences
The following sequences are available for this feature:
mRNA from alignment at ACJE01000005.1:850707..851879+ Legend: five_prime_UTRexonpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >ASPNIDRAFT_212872-T1 ID=ASPNIDRAFT_212872-T1|Name=ASPNIDRAFT_212872-T1|organism=Aspergillus niger ATCC 1015|type=mRNA|length=1173bp|location=Sequence derived from alignment at ACJE01000005.1:850707..851879+ (Aspergillus niger ATCC 1015)
ATTTTCTGTCGTCGCCTCATTGAATCCACCCTCTATCACGACTGCTCTCG
CCGTGATTCTGCCTGGAGCAGACGACTCAACTTCGCGTGAACCGATCGCG
CCACTCCTTGCTCCTACTCTGAGCCTGTCACCCCCCAGCTGCGCCTTCCT
CCGCCAATCTCTCCCCGACACAAAATTTGCCATCCGCGCTATTTTGTCTC
TTCCCCTCCGACACGACCGCTCTCCCTCTCATCACCACAATCCCGCCGCT
GCATCCTCTTCAACCACCTCTCACTTTCCCCTCACTTTCTCATTCAACTT
TCATAATGGCCGCTGTTGCTGAGAACGGCCACGCGCCCGTGGCTGACGAG
AACGCCGCCCCCGTTGCTGCCGCCGTCGAACAGAAGGAACAGACCGAGAA
GACGAATGGAGACTCTGTCACAGTATTCCACGACCCCGAAAACTTCAATG
TGAAGCATCCTTTGATGCACGAGTGGACTCTGTGGTTTACCAAGCCCCCT
AGCGGCAAGGTACGGATTCTTGCCGAATCAGACGCAGCAGTTGATCAGAC
AACTAACCTTGCCTGTGCGATAGGGCGATAACTGGAATGATCTGTTGAAG
GAAGTCGTGACTTTCAACTCCGTTGAGGAATTCTGGGGTATCTACGTATG
TGTTCTTCTTTTGGGCCCACCGAGGAGACCTGCCCGCTAACCAATGCTTC
CTTAGAACAACATCTCGCCGACATCCGAGTTGGGCCTCAAAGCAGACTAC
CATCTCTTCAAGAAGGGAGTTCGTCCCGAGTGGGAAGACCCCCAGAACAA
GCACGGAGGCAAGTGGTCATACTCTTTCAAGGACAAGCGCTCCGTGCCCA
TCGACGACCTGTGGCTGCACGCACAACTGGCCGCTATTGGCGAGACTCTC
GAGAACGATGGTGACAACGAGGTTATGGGTGTTGTTGTGAACGTACGCAA
GGGCTTCTACCGTGTTGGTCTGTGGACTCGGACTGTTGGCAAGAGTATCC
CCGGAGACAAGAACGGTCGCACACCCGCACAGGGCAAGGAGATCCTCGAG
AACATCGGCCGGCGTTTCAAGGAAGTCCTTCGTCTCAAGGAGGCTGATGC
CGTTGAGTTCTCGGGTCACACGGACAGCGCACACAGCGGCAGCACGAGAG
CCAAGGCCAAGTACACTGTCTAA back to topCoding sequence (CDS) from alignment at ACJE01000005.1:850707..851879+ >ASPNIDRAFT_212872-T1 ID=ASPNIDRAFT_212872-T1|Name=ASPNIDRAFT_212872-T1|organism=Aspergillus niger ATCC 1015|type=CDS|length=2232bp|location=Sequence derived from alignment at ACJE01000005.1:850707..851879+ (Aspergillus niger ATCC 1015)
ATGGCCGCTGTTGCTGAGAACGGCCACGCGCCCGTGGCTGACGAGAACGC
CGCCCCCGTTGCTGCCGCCGTCGAACAGAAGGAACAGACCGAGAAGACGA
ATGGAGACTCTGTCACAGTATTCCACGACCCCGAAAACTTCAATGTGAAG
CATCCTTTGATGCACGAGTGGACTCTGTGGTTTACCAAGCCCCCTAGCGG
CAAGGGCGATAACTGGAATGATCTGTTGAAGGAAGTCGTGACTTTCAACT
CCGTTGAGGAATTCTGGGGTATCTACAACAACATCTCGCCGACATCCGAG
TTGGGCCTCAAAGCAGACTACCATCTCTTCAAGAAGGGAGTTCGTCCCGA
GTGGGAAGACCCCCAGAACAAGCACGGAGGCAAGTGGTCATACTCTTTCA
AGGACAAGCGCTCCGTGCCCATCGACGACCTGTGGCTGCACGCACAACTG
GCCGCTATTGGCGAGACTCTCGAGAACGATGGTGACAACGAGGTTATGGG
TGTTGTTGTGAACGTACGCAAGGGCTTCTACCGTGTTGGTCTGTGGACTC
GGACTGTTGGCAAGAGTATCCCCGGAGACAAGAACGGTCGCACACCCGCA
CAGGGCAAGGAGATCCTCGAGAACATCGGCCGGCGTTTCAAGGAAGTCCT
TCGTCTCAAGGAGGCTGATGCCGTTGAGTTCTCGGGTCACACGGACAGCG
CACACAGCGGCAGCACGAGAGCCAAGGCCAAGTACACTGTCTAAATGGCC
GCTGTTGCTGAGAACGGCCACGCGCCCGTGGCTGACGAGAACGCCGCCCC
CGTTGCTGCCGCCGTCGAACAGAAGGAACAGACCGAGAAGACGAATGGAG
ACTCTGTCACAGTATTCCACGACCCCGAAAACTTCAATGTGAAGCATCCT
TTGATGCACGAGTGGACTCTGTGGTTTACCAAGCCCCCTAGCGGCAAGGG
CGATAACTGGAATGATCTGTTGAAGGAAGTCGTGACTTTCAACTCCGTTG
AGGAATTCTGGGGTATCTACAACAACATCTCGCCGACATCCGAGTTGGGC
CTCAAAGCAGACTACCATCTCTTCAAGAAGGGAGTTCGTCCCGAGTGGGA
AGACCCCCAGAACAAGCACGGAGGCAAGTGGTCATACTCTTTCAAGGACA
AGCGCTCCGTGCCCATCGACGACCTGTGGCTGCACGCACAACTGGCCGCT
ATTGGCGAGACTCTCGAGAACGATGGTGACAACGAGGTTATGGGTGTTGT
TGTGAACGTACGCAAGGGCTTCTACCGTGTTGGTCTGTGGACTCGGACTG
TTGGCAAGAGTATCCCCGGAGACAAGAACGGTCGCACACCCGCACAGGGC
AAGGAGATCCTCGAGAACATCGGCCGGCGTTTCAAGGAAGTCCTTCGTCT
CAAGGAGGCTGATGCCGTTGAGTTCTCGGGTCACACGGACAGCGCACACA
GCGGCAGCACGAGAGCCAAGGCCAAGTACACTGTCTAAATGGCCGCTGTT
GCTGAGAACGGCCACGCGCCCGTGGCTGACGAGAACGCCGCCCCCGTTGC
TGCCGCCGTCGAACAGAAGGAACAGACCGAGAAGACGAATGGAGACTCTG
TCACAGTATTCCACGACCCCGAAAACTTCAATGTGAAGCATCCTTTGATG
CACGAGTGGACTCTGTGGTTTACCAAGCCCCCTAGCGGCAAGGGCGATAA
CTGGAATGATCTGTTGAAGGAAGTCGTGACTTTCAACTCCGTTGAGGAAT
TCTGGGGTATCTACAACAACATCTCGCCGACATCCGAGTTGGGCCTCAAA
GCAGACTACCATCTCTTCAAGAAGGGAGTTCGTCCCGAGTGGGAAGACCC
CCAGAACAAGCACGGAGGCAAGTGGTCATACTCTTTCAAGGACAAGCGCT
CCGTGCCCATCGACGACCTGTGGCTGCACGCACAACTGGCCGCTATTGGC
GAGACTCTCGAGAACGATGGTGACAACGAGGTTATGGGTGTTGTTGTGAA
CGTACGCAAGGGCTTCTACCGTGTTGGTCTGTGGACTCGGACTGTTGGCA
AGAGTATCCCCGGAGACAAGAACGGTCGCACACCCGCACAGGGCAAGGAG
ATCCTCGAGAACATCGGCCGGCGTTTCAAGGAAGTCCTTCGTCTCAAGGA
GGCTGATGCCGTTGAGTTCTCGGGTCACACGGACAGCGCACACAGCGGCA
GCACGAGAGCCAAGGCCAAGTACACTGTCTAA back to top
Annotated Terms
The following terms have been associated with this mRNA:
Vocabulary: Cellular Component
| Term | Definition |
|---|
| GO:0005737 | cytoplasm |
Vocabulary: Biological Process
| Term | Definition |
|---|
| GO:0006413 | translational initiation |
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0003723 | RNA binding |
| GO:0003743 | translation initiation factor activity |
Relationships
This mRNA is a part of the following gene feature(s):
The following five_prime_UTR feature(s) are a part of this mRNA:
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Properties
| Property Name | Value |
|---|
| Note | BUSCO:EOG092646VF |
| DBxref | InterPro:IPR019770 |
| DBxref | InterPro:IPR023398 |
| DBxref | InterPro:IPR001040 |
| DBxref | PFAM:PF01652 |
| Product | mRNA-cap binding subunit |
| Product | translation initiation factor 4E |
Analyses
This mRNA is derived from or has results from the following analyses
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| ACJE01000005.1 | supercontig | ACJE01000005.1:850707..851879 + |
|
